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PDB: 904 results

3RBB
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BU of 3rbb by Molmil
HIV-1 NEF protein in complex with engineered HCK SH3 domain
Descriptor: 1,2-ETHANEDIOL, Protein Nef, Tyrosine-protein kinase HCK
Authors:Horenkamp, F.A, Schulte, A, Weyand, M, Geyer, M.
Deposit date:2011-03-29
Release date:2011-04-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Conformation of the Dileucine-Based Sorting Motif in HIV-1 Nef Revealed by Intermolecular Domain Assembly.
Traffic, 12, 2011
3MIU
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BU of 3miu by Molmil
Structure of Banana Lectin-pentamannose complex
Descriptor: HEXANE-1,6-DIOL, Lectin, ZINC ION, ...
Authors:Sharma, A, Vijayan, M.
Deposit date:2010-04-12
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: an X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes
Glycobiology, 21, 2011
5AHW
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BU of 5ahw by Molmil
Crystal structure of universal stress protein MSMEG_3811 in complex with cAMP
Descriptor: (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Adolph, R.S, Kleinboelting, S, Weyand, M, Steegborn, C.
Deposit date:2015-02-10
Release date:2015-04-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A Universal Stress Protein (Usp) in Mycobacteria Binds Camp
J.Biol.Chem., 290, 2015
5VF0
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BU of 5vf0 by Molmil
Solution NMR structure of human RAD18 (198-240) in complex with ubiquitin
Descriptor: E3 ubiquitin-protein ligase RAD18, Polyubiquitin-B, ZINC ION
Authors:Hu, Q, Botuyan, M.V, Mer, G.
Deposit date:2017-04-06
Release date:2017-05-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18.
Mol. Cell, 66, 2017
5VWE
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BU of 5vwe by Molmil
Solution NMR structure of the HMG domain of human FACT complex subunit SSRP1
Descriptor: FACT complex subunit SSRP1
Authors:Hu, Q, Botuyan, M.V, Mer, G.
Deposit date:2017-05-21
Release date:2018-05-23
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR structure of the HMG domain of human FACT complex subunit SSRP1
To Be Published
3MIT
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BU of 3mit by Molmil
Structure of Banana lectin-alpha-D-mannose complex
Descriptor: HEXANE-1,6-DIOL, Lectin, ZINC ION, ...
Authors:Sharma, A, Vijayan, M.
Deposit date:2010-04-12
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: an X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes
Glycobiology, 21, 2011
5BOH
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BU of 5boh by Molmil
Crystal Structure of OXA-58 with the Substrate-Binding Cleft in a Closed State
Descriptor: Beta-lactamase, SULFATE ION
Authors:Saino, H, Sugiyabu, T, Miyano, M.
Deposit date:2015-05-27
Release date:2015-12-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of OXA-58 with the Substrate-Binding Cleft in a Closed State: Insights into the Mobility and Stability of the OXA-58 Structure
Plos One, 10, 2015
1APA
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BU of 1apa by Molmil
X-RAY STRUCTURE OF A POKEWEED ANTIVIRAL PROTEIN, CODED BY A NEW GENOMIC CLONE, AT 0.23 NM RESOLUTION. A MODEL STRUCTURE PROVIDES A SUITABLE ELECTROSTATIC FIELD FOR SUBSTRATE BINDING.
Descriptor: POKEWEED ANTIVIRAL PROTEIN
Authors:Ago, H, Kataoka, J, Tsuge, H, Habuka, N, Inagaki, E, Noma, M, Miyano, M.
Deposit date:1993-09-21
Release date:1994-01-31
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray structure of a pokeweed antiviral protein, coded by a new genomic clone, at 0.23 nm resolution. A model structure provides a suitable electrostatic field for substrate binding.
Eur.J.Biochem., 225, 1994
1CIW
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BU of 1ciw by Molmil
PEANUT LECTIN COMPLEXED WITH N-ACETYLLACTOSAMINE
Descriptor: CALCIUM ION, MANGANESE (II) ION, PROTEIN (PEANUT LECTIN), ...
Authors:Ravishankar, R, Suguna, K, Surolia, A, Vijayan, M.
Deposit date:1999-04-06
Release date:1999-07-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of the complexes of peanut lectin with methyl-beta-galactose and N-acetyllactosamine and a comparative study of carbohydrate binding in Gal/GalNAc-specific legume lectins.
Acta Crystallogr.,Sect.D, 55, 1999
3SD4
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BU of 3sd4 by Molmil
Crystal structure of the first Tudor domain of human PHF20
Descriptor: PHD finger protein 20
Authors:Cui, G, Botuyan, M.V, Thompson, J.R, Mer, G.
Deposit date:2011-06-08
Release date:2011-06-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.928 Å)
Cite:PHF20 is an effector protein of p53 double lysine methylation that stabilizes and activates p53.
Nat.Struct.Mol.Biol., 19, 2012
2Q39
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BU of 2q39 by Molmil
Beta-lactoglobulin (low humidity)
Descriptor: Beta-lactoglobulin
Authors:Vijayalakshmi, L, Krishna, R, Sankaranarayanan, R, Vijayan, M.
Deposit date:2007-05-30
Release date:2008-02-26
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:An asymmetric dimer of beta-lactoglobulin in a low humidity crystal form-Structural changes that accompany partial dehydration and protein action.
Proteins, 71, 2007
2Q2P
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BU of 2q2p by Molmil
Beta-lactoglobulin (reverse native)
Descriptor: Beta-lactoglobulin
Authors:Vijayalakshmi, L, Krishna, R, Sankaranarayanan, R, Vijayan, M.
Deposit date:2007-05-29
Release date:2008-02-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:An asymmetric dimer of beta-lactoglobulin in a low humidity crystal form-Structural changes that accompany partial dehydration and protein action.
Proteins, 71, 2007
7V21
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BU of 7v21 by Molmil
human Serine beta-lactamase-like protein LACTB truncation variant
Descriptor: Serine beta-lactamase-like protein LACTB, mitochondrial
Authors:Zhang, M.H, Yang, M.J.
Deposit date:2021-08-07
Release date:2022-02-16
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structural basis for the catalytic activity of filamentous human serine beta-lactamase-like protein LACTB.
Structure, 30, 2022
7V1Y
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BU of 7v1y by Molmil
Serine beta-lactamase-like protein LACTB in complex with inhibitor
Descriptor: ALA-ALA-B3S, Serine beta-lactamase-like protein LACTB, mitochondrial
Authors:Zhang, M.H, Yang, M.J.
Deposit date:2021-08-07
Release date:2022-02-16
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Structural basis for the catalytic activity of filamentous human serine beta-lactamase-like protein LACTB.
Structure, 30, 2022
7V1Z
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BU of 7v1z by Molmil
human Serine beta-lactamase-like protein LACTB
Descriptor: Serine beta-lactamase-like protein LACTB, mitochondrial
Authors:Zhang, M.H, Yang, M.J.
Deposit date:2021-08-07
Release date:2022-02-16
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Structural basis for the catalytic activity of filamentous human serine beta-lactamase-like protein LACTB.
Structure, 30, 2022
7E3O
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BU of 7e3o by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody nCoV617
Descriptor: Spike protein S1, nCoV617 Heigh Chain, nCoV617 Light Chain
Authors:Chen, S.D, Yang, M.
Deposit date:2021-02-09
Release date:2021-09-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structural Basis of a Human Neutralizing Antibody Specific to the SARS-CoV-2 Spike Protein Receptor-Binding Domain.
Microbiol Spectr, 9, 2021
1J1Y
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BU of 1j1y by Molmil
Crystal Structure of PaaI from Thermus thermophilus HB8
Descriptor: CHLORIDE ION, MAGNESIUM ION, PaaI protein
Authors:Kunishima, N, Sugahara, M, Kuramitsu, S, Yokoyama, S, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-12-24
Release date:2004-02-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
3ED8
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BU of 3ed8 by Molmil
Application of the superfolder YFP bimolecular fluorescence complementation for studying protein-protein interactions in vitro
Descriptor: yellow fluorescence protein
Authors:Ottmann, C, Weyand, M.
Deposit date:2008-09-02
Release date:2009-01-20
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Applicability of superfolder YFP bimolecular fluorescence complementation in vitro.
Biol.Chem., 390, 2009
3LW1
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BU of 3lw1 by Molmil
Binary complex of 14-3-3 sigma and p53 pT387-peptide
Descriptor: 14-3-3 protein sigma, CHLORIDE ION, GLYCEROL, ...
Authors:Schumacher, B, Mondry, J, Thiel, P, Weyand, M, Ottmann, C.
Deposit date:2010-02-23
Release date:2010-03-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Structure of the p53 C-terminus bound to 14-3-3: Implications for stabilization of the p53 tetramer
Febs Lett., 584, 2010
7WGW
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BU of 7wgw by Molmil
NMR Solution Structure of a cGMP Fill-in Vacancy G-quadruplex Formed in the Oxidized BLM Gene Promoter
Descriptor: CYCLIC GUANOSINE MONOPHOSPHATE, DNA (20-MER)
Authors:Wang, K.B, Liu, Y, Li, Y, Li, J, Dickerhoff, J, Yang, M.H, Yang, D, Kong, L.Y.
Deposit date:2021-12-29
Release date:2022-05-18
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Oxidative Damage Induces a Vacancy G-Quadruplex That Binds Guanine Metabolites: Solution Structure of a cGMP Fill-in Vacancy G-Quadruplex in the Oxidized BLM Gene Promoter.
J.Am.Chem.Soc., 144, 2022
7D14
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BU of 7d14 by Molmil
Mouse KCC2
Descriptor: Solute carrier family 12 member 5
Authors:Zhang, S, Yang, M.
Deposit date:2020-09-13
Release date:2021-04-14
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The structural basis of function and regulation of neuronal cotransporters NKCC1 and KCC2.
Commun Biol, 4, 2021
7D10
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BU of 7d10 by Molmil
Human NKCC1
Descriptor: PALMITIC ACID, Solute carrier family 12 member 2
Authors:Zhang, S, Yang, M.
Deposit date:2020-09-12
Release date:2021-04-14
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:The structural basis of function and regulation of neuronal cotransporters NKCC1 and KCC2.
Commun Biol, 4, 2021
3MIV
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BU of 3miv by Molmil
Structure of Banana lectin - Glc-alpha(1,2)-Glc complex
Descriptor: Lectin, ZINC ION
Authors:Sharma, A, Vijayan, M.
Deposit date:2010-04-12
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: an X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes
Glycobiology, 21, 2011
8GAG
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BU of 8gag by Molmil
Cannabinoid receptor 1-Gi complex with novel ligand
Descriptor: Cannabinoid receptor 1, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Tummino, T.A, Iliopoulos-Tsoutsouvas, C, Braz, J.M, O'Brien, E.S, Krishna Kumar, K, Makriyannis, M, Basbaum, A.I, Shoichet, B.K.
Deposit date:2023-02-22
Release date:2024-02-28
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cannabinoid receptor 1-Gi complex with novel ligand
To Be Published
1LQM
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BU of 1lqm by Molmil
ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE COMPLEX WITH URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN
Descriptor: URACIL-DNA GLYCOSYLASE, URACIL-DNA GLYCOSYLASE INHIBITOR
Authors:Saikrishnan, K, Sagar, M.B, Ravishankar, R, Roy, S, Purnapatre, K, Varshney, U, Vijayan, M.
Deposit date:2002-05-10
Release date:2002-11-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Domain closure and action of uracil DNA glycosylase (UDG): structures of new crystal forms containing the Escherichia coli enzyme and a comparative study of the known structures involving UDG.
Acta Crystallogr.,Sect.D, 58, 2002

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