Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 67 件
7BUR
DownloadVisualize
BU of 7bur by Molmil
Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin
分子名称: CITRIC ACID, Chalcone synthase 1, NARINGENIN
著者Imaizumi, R, Mameda, R, Takeshita, K, Waki, T, Kubo, H, Sakai, N, Nakata, S, Takahashi, S, Kataoka, K, Yamamoto, M, Yamashita, S, Nakayama, T.
登録日2020-04-08
公開日2020-08-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Crystal structure of chalcone synthase, a key enzyme for isoflavonoid biosynthesis in soybean.
Proteins, 2020
7BUS
DownloadVisualize
BU of 7bus by Molmil
Chalcone synthase from Glycine max (L.) Merr (soybean)
分子名称: Chalcone synthase
著者Imaizumi, R, Mameda, R, Takeshita, K, Waki, T, Kubo, H, Sakai, N, Nakata, S, Takahashi, S, Kataoka, K, Yamamoto, M, Yamashita, S, Nakayama, T.
登録日2020-04-08
公開日2020-08-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Crystal structure of chalcone synthase, a key enzyme for isoflavonoid biosynthesis in soybean.
Proteins, 2020
8JRD
DownloadVisualize
BU of 8jrd by Molmil
Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin and coenzyme A
分子名称: 1,2-ETHANEDIOL, COENZYME A, DI(HYDROXYETHYL)ETHER, ...
著者Waki, T, Imaizumi, R, Nakata, S, Yanai, T, Takeshita, K, Sakai, N, Kataoka, K, Yamamoto, M, Nakayama, T, Yamashita, S.
登録日2023-06-16
公開日2024-06-19
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Structural insights into catalytic promiscuity of chalcone synthase from Glycine max (L.) Merr.: Coenzyme A-induced alteration of product specificity.
Biochem.Biophys.Res.Commun., 718, 2024
8KGA
DownloadVisualize
BU of 8kga by Molmil
SlNDPS1-AtcPT4 Chimera
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Dimethylallylcistransferase CPT1, ...
著者Suenaga-Hiromori, M, Ishii, T, Imaizumi, R, Takeshita, K, Yanai, T, Matsuura, H, Sakai, N, Yamaguchi, H, Yanbe, F, Waki, T, Tozawa, Y, Miyagi-Inoue, Y, Yamamoto, M, Kataoka, K, Nakayama, T, Yamashita, S, Takahashi, S.
登録日2023-08-18
公開日2024-08-21
実験手法X-RAY DIFFRACTION (2.182 Å)
主引用文献Biosynthesising various rubber-like polymers by reconstituting prenyltransferases on Hevea rubber particles: molecular and structural bases of the versatile system
To Be Published
8KGB
DownloadVisualize
BU of 8kgb by Molmil
SlNDPS1-AtcPT4 Chimera complexed with GSPP, Mg2+, and IPP
分子名称: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, Dimethylallylcistransferase CPT1, chloroplastic,Dehydrodolichyl diphosphate synthase 2, ...
著者Suenaga-Hiromori, M, Ishii, T, Imaizumi, R, Takeshita, K, Yanai, T, Matsuura, H, Sakai, N, Yamaguchi, H, Yanbe, F, Waki, T, Tozawa, Y, Miyagi-Inoue, Y, Yamamoto, M, Kataoka, K, Nakayama, T, Yamashita, S, Takahashi, S.
登録日2023-08-18
公開日2024-08-21
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献A versatile system for enzymatic synthesis of natural and unnatural polyisoprenoids on rubber particles
To Be Published
8JF5
DownloadVisualize
BU of 8jf5 by Molmil
Crystal structure of Lysine Specific Demethylase 1 (LSD1) with TAS1440
分子名称: 4-[5-[(3~{R})-3-azanylpyrrolidin-1-yl]carbonyl-2-[2-fluoranyl-4-(2-methyl-2-oxidanyl-propyl)phenyl]phenyl]-2-fluoranyl-benzenecarbonitrile, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Fukushima, H, Machida, T, Yamashita, S, Suzuki, T.
登録日2023-05-17
公開日2024-05-22
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献TAS1440, a histone H3 competitive LSD1 inhibitor, activates both TGF-beta and notch signaling pathways via INSM1 dissociation in neuroendocrine small cell lung cancer
To Be Published
6AJN
DownloadVisualize
BU of 6ajn by Molmil
Crystal structure of AtaTR bound with AcCoA
分子名称: ACETYL COENZYME *A, DUF1778 domain-containing protein, N-acetyltransferase
著者Yashiro, Y, Yamashita, S, Tomita, K.
登録日2018-08-28
公開日2019-01-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.302 Å)
主引用文献Crystal Structure of the Enterohemorrhagic Escherichia coli AtaT-AtaR Toxin-Antitoxin Complex.
Structure, 27, 2019
6AJM
DownloadVisualize
BU of 6ajm by Molmil
Crystal structure of apo AtaTR
分子名称: DUF1778 domain-containing protein, N-acetyltransferase, TRIETHYLENE GLYCOL
著者Yashiro, Y, Yamashita, S, Tomita, K.
登録日2018-08-28
公開日2019-01-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.604 Å)
主引用文献Crystal Structure of the Enterohemorrhagic Escherichia coli AtaT-AtaR Toxin-Antitoxin Complex.
Structure, 27, 2019
7VPC
DownloadVisualize
BU of 7vpc by Molmil
Neryl diphosphate synthase from Solanum lycopersicum
分子名称: 1,2-ETHANEDIOL, D-MALATE, Neryl-diphosphate synthase 1
著者Imaizumi, R, Misawa, S, Takeshita, K, Sakai, N, Yamamoto, M, Kataoka, K, Nakayama, T, Takahashi, S, Yamashita, S.
登録日2021-10-15
公開日2022-05-18
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structure-based engineering of a short-chain cis-prenyltransferase to biosynthesize nonnatural all-cis-polyisoprenoids: molecular mechanisms for primer substrate recognition and ultimate product chain-length determination.
Febs J., 289, 2022
3VKM
DownloadVisualize
BU of 3vkm by Molmil
Protease-resistant mutant form of Human Galectin-8 in complex with sialyllactose and lactose
分子名称: 1,2-ETHANEDIOL, Galectin-8, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, ...
著者Yoshida, H, Yamashita, S, Teraoka, M, Nakakita, S, Nishi, N, Kamitori, S.
登録日2011-11-18
公開日2012-09-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains
Febs J., 279, 2012
3WQ9
DownloadVisualize
BU of 3wq9 by Molmil
Crystal structure of Hsp90-alpha N-terminal domain in complex with 2-(4-Hydroxy-cyclohexylamino)-4-[5-(4-phenyl-imidazol-1-yl)-isoquinolin-1-yl]-benzamide
分子名称: 2-[(trans-4-hydroxycyclohexyl)amino]-4-[5-(4-phenyl-1H-imidazol-1-yl)isoquinolin-1-yl]benzamide, Heat shock protein HSP 90-alpha
著者Chong, K.T, Yamashita, S, Oshiumi, H, Uno, T, Kitade, M.
登録日2014-01-23
公開日2015-02-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Evolution of highly selective Hsp90 / inhibitors by structure and thermodynamics guided design
To be Published
2ZRW
DownloadVisualize
BU of 2zrw by Molmil
Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with FMN and IPP.
分子名称: FLAVIN MONONUCLEOTIDE, ISOPENTYL PYROPHOSPHATE, Isopentenyl-diphosphate delta-isomerase, ...
著者Unno, H, Yamashita, S, Ikeda, Y, Sekiguchi, S, Yoshida, N, Yoshimura, T, Kusunoki, M, Nakayama, T, Nishino, T, Hemmi, H.
登録日2008-09-01
公開日2009-01-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase.
J.Biol.Chem., 284, 2009
2ZRU
DownloadVisualize
BU of 2zru by Molmil
Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with FMN
分子名称: FLAVIN MONONUCLEOTIDE, Isopentenyl-diphosphate delta-isomerase
著者Unno, H, Yamashita, S, Ikeda, Y, Sekiguchi, S, Yoshida, N, Yoshimura, T, Kusunoki, M, Nakayama, T, Nishino, T, Hemmi, H.
登録日2008-09-01
公開日2009-01-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase.
J.Biol.Chem., 284, 2009
2ZRV
DownloadVisualize
BU of 2zrv by Molmil
Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with reduced FMN.
分子名称: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, Isopentenyl-diphosphate delta-isomerase
著者Unno, H, Yamashita, S, Ikeda, Y, Sekiguchi, S, Yoshida, N, Yoshimura, T, Kusunoki, M, Nakayama, T, Nishino, T, Hemmi, H.
登録日2008-09-01
公開日2009-01-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase.
J.Biol.Chem., 284, 2009
2ZRY
DownloadVisualize
BU of 2zry by Molmil
Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with reduced FMN and IPP.
分子名称: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, Isopentenyl-diphosphate delta-isomerase, ...
著者Unno, H, Yamashita, S, Ikeda, Y, Sekiguchi, S, Yoshida, N, Yoshimura, T, Kusunoki, M, Nakayama, T, Nishino, T, Hemmi, H.
登録日2008-09-01
公開日2009-01-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase.
J.Biol.Chem., 284, 2009
2ZRX
DownloadVisualize
BU of 2zrx by Molmil
Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with FMN and DMAPP.
分子名称: DIMETHYLALLYL DIPHOSPHATE, FLAVIN MONONUCLEOTIDE, Isopentenyl-diphosphate delta-isomerase, ...
著者Unno, H, Yamashita, S, Ikeda, Y, Sekiguchi, S, Yoshida, N, Yoshimura, T, Kusunoki, M, Nakayama, T, Nishino, T, Hemmi, H.
登録日2008-09-01
公開日2009-01-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase.
J.Biol.Chem., 284, 2009
2ZRZ
DownloadVisualize
BU of 2zrz by Molmil
Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with reduced FMN and DMAPP
分子名称: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, DIMETHYLALLYL DIPHOSPHATE, Isopentenyl-diphosphate delta-isomerase, ...
著者Unno, H, Yamashita, S, Ikeda, Y, Sekiguchi, S, Yoshida, N, Yoshimura, T, Kusunoki, M, Nakayama, T, Nishino, T, Hemmi, H.
登録日2008-09-01
公開日2009-01-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase.
J.Biol.Chem., 284, 2009
<123

 

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon