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PDB: 67 件
5WU4
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BU of 5wu4 by Molmil
Crystal structure of human Tut1 bound with MgATP, form II
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
著者Yamashita, S, Tomita, K.
登録日2016-12-16
公開日2017-05-31
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
5WU3
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BU of 5wu3 by Molmil
Crystal structure of human Tut1 bound with MgUTP, form II
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
著者Yamashita, S, Tomita, K.
登録日2016-12-16
公開日2017-05-31
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.703 Å)
主引用文献Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
8IE2
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BU of 8ie2 by Molmil
Crystal structure of Lactiplantibacillus plantarum GlyRS
分子名称: Glycine--tRNA ligase alpha subunit, Glycine--tRNA ligase beta subunit
著者Yamashita, S, Tomita, K.
登録日2023-02-15
公開日2023-06-07
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Mechanism of tRNA recognition by heterotetrameric glycyl-tRNA synthetase from lactic acid bacteria.
J.Biochem., 174, 2023
8IDF
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BU of 8idf by Molmil
Crystal structure of human TUT1 complexed with U6 snRNA
分子名称: RNA (53-MER), Speckle targeted PIP5K1A-regulated poly(A) polymerase, ZINC ION
著者Yamashita, S, Tomita, K.
登録日2023-02-13
公開日2023-08-09
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Mechanism of U6 snRNA oligouridylation by human TUT1.
Nat Commun, 14, 2023
4WBY
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BU of 4wby by Molmil
tRNA-processing enzyme (apo form I)
分子名称: GLYCEROL, Poly A polymerase, SULFATE ION
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC4
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BU of 4wc4 by Molmil
tRNA-processing enzyme complex 2
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (74-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.501 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC5
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BU of 4wc5 by Molmil
Structure of tRNA-processing enzyme complex 3
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (74-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.41 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
3LLH
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BU of 3llh by Molmil
Crystal structure of the first dsRBD of TAR RNA-binding protein 2
分子名称: MALONATE ION, RISC-loading complex subunit TARBP2
著者Yamashita, S, Kawazoe, M, Takemoto, C, Sekine, S, Wakiyama, M, Yokoyama, S.
登録日2010-01-29
公開日2010-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献The structures of dsRBDs of human TRBP
To be Published
4WC6
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BU of 4wc6 by Molmil
Structure of tRNA-processing enzyme complex 4
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-mer)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.41 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC3
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BU of 4wc3 by Molmil
Structure of tRNA-processing enzyme complex 1
分子名称: Poly A polymerase, RNA 76-mer
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC0
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BU of 4wc0 by Molmil
tRNA-processing enzyme with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly A polymerase
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WBZ
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BU of 4wbz by Molmil
tRNA-processing enzyme (apo form 2)
分子名称: Poly A polymerase
著者Yamashita, S, Tomtia, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC2
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BU of 4wc2 by Molmil
Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION, Poly A polymerase, ...
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC1
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BU of 4wc1 by Molmil
Structure of tRNA-processing enzyme with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC7
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BU of 4wc7 by Molmil
Structure of tRNA-processing enzyme complex 5
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.102 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
3QRA
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BU of 3qra by Molmil
The crystal structure of Ail, the attachment invasion locus protein of Yersinia pestis
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Attachment invasion locus protein
著者Yamashita, S, Lukacik, P, Noinaj, N, Buchanan, S.K.
登録日2011-02-17
公開日2011-11-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献Structural Insights into Ail-Mediated Adhesion in Yersinia pestis.
Structure, 19, 2011
3QRC
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BU of 3qrc by Molmil
The crystal structure of Ail, the attachment invasion locus protein of Yersinia pestis, in complex with the heparin analogue sucrose octasulfate
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose, Attachment invasion locus protein
著者Yamashita, S, Lukacik, P, Noinaj, N, Buchanan, S.K.
登録日2011-02-17
公開日2011-11-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.852 Å)
主引用文献Structural Insights into Ail-Mediated Adhesion in Yersinia pestis.
Structure, 19, 2011
4EN6
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BU of 4en6 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-3-sialyllactose
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
登録日2012-04-12
公開日2012-06-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
4EN8
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BU of 4en8 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-6-sialyllactose
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
登録日2012-04-12
公開日2012-06-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
4EN9
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BU of 4en9 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-6-sialyllactosamine
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
登録日2012-04-12
公開日2012-06-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
4EN7
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BU of 4en7 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-3-sialyllactosamine
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
登録日2012-04-12
公開日2012-06-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
4X0A
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BU of 4x0a by Molmil
Structure of tRNA-processing enzyme complex 6
分子名称: Poly A polymerase, RNA (73-MER)
著者Yamashita, S, Tomita, K.
登録日2014-11-21
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.505 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4X0B
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BU of 4x0b by Molmil
Structure of tRNA-processing enzyme complex 7
分子名称: Poly A polymerase, RNA (77-MER)
著者Yamashita, S, Tomita, K.
登録日2014-11-21
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
5Y0S
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BU of 5y0s by Molmil
Crystal structure of apo Thermotoga maritima TmcAL(Form II)
分子名称: 1,2-ETHANEDIOL, Thermotoga maritima TmcAL
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.103 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0T
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BU of 5y0t by Molmil
Crystal structure of Thermotoga maritima TmcAL bound with alpha-thio ATP(Form II)
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, PENTAETHYLENE GLYCOL, ...
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018

 

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