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PDB: 9 results
5JP4
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BU of 5jp4 by Molmil
Crystal structure of S. pombe Dcp1 in complex with the decapping enhancer EDC
Descriptor: Uncharacterized protein C18G6.09c, mRNA-decapping enzyme subunit 1
Authors:Wurm, J.P, Sprangers, R.
Deposit date:2016-05-03
Release date:2016-06-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.043 Å)
Cite:The S. pombe mRNA decapping complex recruits cofactors and an Edc1-like activator through a single dynamic surface.
Rna, 22, 2016
5AP8
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BU of 5ap8 by Molmil
Structure of the SAM-dependent rRNA:acp-transferase Tsr3 from S. solfataricus
Descriptor: TSR3
Authors:Wurm, J.P, Immer, C, Pogoryelov, D, Meyer, B, Koetter, P, Entian, K.-D, Woehnert, J.
Deposit date:2015-09-14
Release date:2016-04-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.246 Å)
Cite:Ribosome Biogenesis Factor Tsr3 is the Aminocarboxypropyl Transferase Responsible for 18S Rrna Hypermodification in Yeast and Humans
Nucleic Acids Res., 44, 2016
7PMQ
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BU of 7pmq by Molmil
DEAD-box helicase DbpA in the active conformation bound to a hairpin loop RNA and ADP/BeF3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DbpA, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Wurm, J.P.
Deposit date:2021-09-02
Release date:2022-09-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:Structural basis for RNA-duplex unwinding by the DEAD-box helicase DbpA.
Rna, 29, 2023
7PMM
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BU of 7pmm by Molmil
DEAD-box helicase DbpA in the active conformation bound to a ss/dsRNA junction and ADP/BeF3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DbpA, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Wurm, J.P.
Deposit date:2021-09-02
Release date:2022-09-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for RNA-duplex unwinding by the DEAD-box helicase DbpA.
Rna, 29, 2023
7BBB
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BU of 7bbb by Molmil
Solution structure of C-terminal RecA and RRM domains of the DEAD box helicase DbpA
Descriptor: ATP-dependent RNA helicase DbpA
Authors:Wurm, J.P, Sprangers, R.
Deposit date:2020-12-17
Release date:2021-07-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for the activation of the DEAD-box RNA helicase DbpA by the nascent ribosome.
Proc.Natl.Acad.Sci.USA, 118, 2021
5APG
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BU of 5apg by Molmil
Structure of the SAM-dependent rRNA:acp-transferase Tsr3 from Vulcanisaeta distributa
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, TSR3, [(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selanium
Authors:Wurm, J.P, Immer, C, Pogoryelov, D, Meyer, B, Koetter, P, Entian, K.-D, Woehnert, J.
Deposit date:2015-09-15
Release date:2016-04-27
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Ribosome Biogenesis Factor Tsr3 is the Aminocarboxypropyl Transferase Responsible for 18S Rrna Hypermodification in Yeast and Humans
Nucleic Acids Res., 44, 2016
7PLI
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BU of 7pli by Molmil
DEAD-box helicase DbpA bound to single stranded RNA and ADP/BeF3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DbpA, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Wurm, J.P.
Deposit date:2021-08-31
Release date:2022-09-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for RNA-duplex unwinding by the DEAD-box helicase DbpA.
Rna, 29, 2023
2LCQ
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BU of 2lcq by Molmil
Solution structure of the endonuclease Nob1 from P.horikoshii
Descriptor: Putative toxin VapC6, ZINC ION
Authors:Veith, T, Martin, R, Wurm, J.P, Weis, B, Duchardt-Ferner, E, Safferthal, C, Hennig, R, Mirus, O, Bohnsack, M.T, Woehnert, J, Schleiff, E.
Deposit date:2011-05-05
Release date:2011-12-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural and functional analysis of the archaeal endonuclease Nob1.
Nucleic Acids Res., 40, 2012
7PVM
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BU of 7pvm by Molmil
NMR structure of the C. thermophilum Xrn2 zinc finger
Descriptor: 5'-3' exoribonuclease, ZINC ION
Authors:Overbeck, J.H, Sprangers, R, Wurm, J.P.
Deposit date:2021-10-05
Release date:2022-07-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Observation of conformational changes that underlie the catalytic cycle of Xrn2.
Nat.Chem.Biol., 18, 2022

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