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PDB: 220 results

4QO6
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Structural studies of CdsD, a structural protein of the Type III secretion system (TTSS) of Chlamydia trachomatis
Descriptor: Adenylate cyclase-like protein, DI(HYDROXYETHYL)ETHER, ISOPROPYL ALCOHOL
Authors:Merilainen, G, Wierenga, R.K.
Deposit date:2014-06-19
Release date:2015-06-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:The extended structure of the periplasmic region of CdsD, a structural protein of the type III secretion system of Chlamydia trachomatis.
Protein Sci., 25, 2016
4NAE
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BU of 4nae by Molmil
PcrB from Geobacillus kaustophilus, with bound G1P
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Heptaprenylglyceryl phosphate synthase, SN-GLYCEROL-1-PHOSPHATE
Authors:Peterhoff, D, Beer, B, Rajendran, C, Kumpula, E.P, Kapetaniou, E, Guldan, H, Wierenga, R.K, Sterner, R, Babinger, P.
Deposit date:2013-10-22
Release date:2014-06-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:A comprehensive analysis of the geranylgeranylglyceryl phosphate synthase enzyme family identifies novel members and reveals mechanisms of substrate specificity and quaternary structure organization.
Mol.Microbiol., 92, 2014
4PC8
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Structure-based protein engineering efforts on the scaffold of a monomeric triosephosphate isomerase yielding a sugar isomerase
Descriptor: GLYCOLIC ACID, Ma21-TIM
Authors:Krause, M, Neubauer, P, Wierenga, R.K.
Deposit date:2014-04-14
Release date:2015-04-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of two monomeric triosephosphate isomerase variants identified via a directed-evolution protocol selecting for L-arabinose isomerase activity.
Acta Crystallogr.,Sect.F, 72, 2016
4QQ0
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CdsD - The structural protein of the Type III secretion system of Chlamydia trachomatis: C-terminal domain
Descriptor: Adenylate cyclase-like protein, SULFATE ION
Authors:Merilainen, G, Wierenga, R.K.
Deposit date:2014-06-26
Release date:2015-07-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:The extended structure of the periplasmic region of CdsD, a structural protein of the type III secretion system of Chlamydia trachomatis.
Protein Sci., 25, 2016
4JEJ
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BU of 4jej by Molmil
GGGPS from Flavobacterium johnsoniae
Descriptor: Geranylgeranylglyceryl phosphate synthase, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Peterhoff, D, Beer, B, Rajendran, C, Kumpula, E.P, Kapetaniou, E, Guldan, H, Wierenga, R.K, Sterner, R, Babinger, P.
Deposit date:2013-02-27
Release date:2014-06-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:A comprehensive analysis of the geranylgeranylglyceryl phosphate synthase enzyme family identifies novel members and reveals mechanisms of substrate specificity and quaternary structure organization.
Mol.Microbiol., 92, 2014
4MM1
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BU of 4mm1 by Molmil
GGGPS from Methanothermobacter thermautotrophicus
Descriptor: Geranylgeranylglyceryl phosphate synthase, SN-GLYCEROL-1-PHOSPHATE, TRIETHYLENE GLYCOL
Authors:Rajendran, C, Peterhoff, D, Beer, B, Kumpula, E.P, Kapetaniou, E, Guldan, H, Wierenga, R.K, Sterner, R, Babinger, P.
Deposit date:2013-09-07
Release date:2014-06-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8004 Å)
Cite:A comprehensive analysis of the geranylgeranylglyceryl phosphate synthase enzyme family identifies novel members and reveals mechanisms of substrate specificity and quaternary structure organization.
Mol.Microbiol., 92, 2014
4NAF
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BU of 4naf by Molmil
PrcB from Geobacillus kaustophilus, apo structure
Descriptor: Heptaprenylglyceryl phosphate synthase
Authors:Peterhoff, D, Beer, B, Rajendran, C, Kumpula, E.P, Kapetaniou, E, Guldan, H, Wierenga, R.K, Sterner, R, Babinger, P.
Deposit date:2013-10-22
Release date:2014-06-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A comprehensive analysis of the geranylgeranylglyceryl phosphate synthase enzyme family identifies novel members and reveals mechanisms of substrate specificity and quaternary structure organization.
Mol.Microbiol., 92, 2014
1QFL
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BU of 1qfl by Molmil
BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH A REACTION INTERMEDIATE.
Descriptor: COENZYME A, PROTEIN (ACETOACETYL-COA THIOLASE), SULFATE ION
Authors:Modis, Y, Wierenga, R.K.
Deposit date:1999-04-12
Release date:2000-04-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:A biosynthetic thiolase in complex with a reaction intermediate: the crystal structure provides new insights into the catalytic mechanism.
Structure Fold.Des., 7, 1999
3PH9
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BU of 3ph9 by Molmil
Crystal structure of the human anterior gradient protein 3
Descriptor: Anterior gradient protein 3 homolog
Authors:Nguyen, V.D, Ruddock, L.W, Salin, M, Wierenga, R.K.
Deposit date:2010-11-03
Release date:2011-10-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structure of human anterior gradient protein 3.
Acta Crystallogr.,Sect.F, 74, 2018
5MGB
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BU of 5mgb by Molmil
Crystal Structure of Rat Peroxisomal Multifunctional enzyme Type-1 (RPMFE1) Complexed with Acetoacetyl-CoA and NAD
Descriptor: ACETOACETYL-COENZYME A, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Kasaragod, P, Kiema, T.-R, Schmitz, W, Hiltunen, J.K, Wierenga, R.K.
Deposit date:2016-11-21
Release date:2016-12-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural enzymology comparisons of multifunctional enzyme, type-1 (MFE1): the flexibility of its dehydrogenase part.
FEBS Open Bio, 7, 2017
5BZ4
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BU of 5bz4 by Molmil
Crystal structure of a T1-like thiolase (CoA-complex) from Mycobacterium smegmatis
Descriptor: Beta-ketothiolase, COENZYME A
Authors:Janardan, N, Harijan, R.K, Kiema, T.R, Wierenga, R.K, Murthy, M.R.N.
Deposit date:2015-06-11
Release date:2016-05-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structural characterization of a mitochondrial 3-ketoacyl-CoA (T1)-like thiolase from Mycobacterium smegmatis
Acta Crystallogr.,Sect.D, 71, 2015
7QNF
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BU of 7qnf by Molmil
CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT N151G, L259V COMPLEXED WITH FE, NAD+, AND ETHYLENE GLYCOL
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5-DIPHOSPHORIBOSE, FE (III) ION, ...
Authors:Sridhar, S, Kiema, T.R, Wierenga, R.K, Widersten, M.
Deposit date:2021-12-20
Release date:2022-10-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics.
Febs J., 290, 2023
7QH0
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BU of 7qh0 by Molmil
Apo structure of the Leishmania mexicana triose-phosphate isomerase (LmTIM), N11A-E65Q variant, open conformation
Descriptor: CHLORIDE ION, SODIUM ION, Triosephosphate isomerase
Authors:Cordara, G, Wierenga, R.K.
Deposit date:2021-12-10
Release date:2022-10-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The Role of Asn11 in Catalysis by Triosephosphate Isomerase.
Biochemistry, 62, 2023
7QNI
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BU of 7qni by Molmil
CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT L259V
Descriptor: CITRIC ACID, Lactaldehyde reductase
Authors:Sridhar, S, Kiema, T.R, Wierenga, R.K, Widersten, M.
Deposit date:2021-12-20
Release date:2022-10-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics.
Febs J., 290, 2023
7QNJ
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BU of 7qnj by Molmil
CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT F254I COMPLEXED WITH FE, NAD+, AND GLYCEROL
Descriptor: FE (III) ION, GLYCEROL, Lactaldehyde reductase, ...
Authors:Sridhar, S, Kiema, T.R, Wierenga, R.K, Widersten, M.
Deposit date:2021-12-20
Release date:2022-10-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics.
Febs J., 290, 2023
3ZBN
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BU of 3zbn by Molmil
Crystal structure of SCP2 thiolase from Leishmania mexicana. Complex of the C123A mutant with Coenzyme A.
Descriptor: 3-KETOACYL-COA THIOLASE-LIKE PROTEIN, COENZYME A
Authors:Harijan, R.K, Kiema, T.-R, Weiss, M.S, Michels, P.A.M, Wierenga, R.K.
Deposit date:2012-11-11
Release date:2013-08-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal Structures of Scp2-Thiolases of Trypanosomatidae, Human Pathogens Causing Widespread Tropical Diseases: The Importance for Catalysis of the Cysteine of the Unique Hdcf Loop.
Biochem.J., 455, 2013
3ZBG
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BU of 3zbg by Molmil
Crystal structure of wild-type SCP2 thiolase from Leishmania mexicana at 1.85 A
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-KETOACYL-COA THIOLASE-LIKE PROTEIN, DIMETHYL SULFOXIDE
Authors:Harijan, R.K, Kiema, T.-R, Weiss, M.S, Michels, P.A.M, Wierenga, R.K.
Deposit date:2012-11-09
Release date:2013-08-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structures of Scp2-Thiolases of Trypanosomatidae, Human Pathogens Causing Widespread Tropical Diseases: The Importance for Catalysis of the Cysteine of the Unique Hdcf Loop.
Biochem.J., 455, 2013
3ZBL
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BU of 3zbl by Molmil
Crystal structure of SCP2 thiolase from Leishmania mexicana: The C123S mutant.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-KETOACYL-COA THIOLASE-LIKE PROTEIN, CHLORIDE ION, ...
Authors:Harijan, R.K, Kiema, T.-R, Weiss, M.S, Michels, P.A.M, Wierenga, R.K.
Deposit date:2012-11-10
Release date:2013-08-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of Scp2-Thiolases of Trypanosomatidae, Human Pathogens Causing Widespread Tropical Diseases: The Importance for Catalysis of the Cysteine of the Unique Hdcf Loop.
Biochem.J., 455, 2013
3ZBK
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BU of 3zbk by Molmil
Crystal structure of SCP2 thiolase from Leishmania mexicana: The C123A mutant.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-KETOACYL-COA THIOLASE-LIKE PROTEIN, CHLORIDE ION, ...
Authors:Harijan, R.K, Kiema, T.-R, Weiss, M.S, Michels, P.A.M, Wierenga, R.K.
Deposit date:2012-11-10
Release date:2013-08-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of Scp2-Thiolases of Trypanosomatidae, Human Pathogens Causing Widespread Tropical Diseases: The Importance for Catalysis of the Cysteine of the Unique Hdcf Loop.
Biochem.J., 455, 2013
2DUB
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BU of 2dub by Molmil
ENOYL-COA HYDRATASE COMPLEXED WITH OCTANOYL-COA
Descriptor: 2-ENOYL-COA HYDRATASE, OCTANOYL-COENZYME A
Authors:Engel, C.K, Wierenga, R.K.
Deposit date:1997-04-28
Release date:1998-04-29
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The crystal structure of enoyl-CoA hydratase complexed with octanoyl-CoA reveals the structural adaptations required for binding of a long chain fatty acid-CoA molecule.
J.Mol.Biol., 275, 1998
6YSW
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BU of 6ysw by Molmil
E. coli anaerobic trifunctional enzyme subunit-alpha in complex with coenzyme A
Descriptor: COENZYME A, Fatty acid oxidation complex subunit alpha, SULFATE ION
Authors:Sah-Teli, S.K, Hynonen, M.J, Wierenga, R.K, Venkatesan, R.
Deposit date:2020-04-23
Release date:2021-05-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Structural basis for different membrane-binding properties of E. coli anaerobic and human mitochondrial beta-oxidation trifunctional enzymes
Structure, 2023
6YSV
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BU of 6ysv by Molmil
E. coli anaerobic trifunctional enzyme subunit-alpha
Descriptor: Fatty acid oxidation complex subunit alpha, SULFATE ION
Authors:Sah-Teli, S.K, Hynonen, M.J, Wierenga, R.K, Venkatesan, R.
Deposit date:2020-04-23
Release date:2021-05-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for different membrane-binding properties of E. coli anaerobic and human mitochondrial beta-oxidation trifunctional enzymes
Structure, 2023
1HNU
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BU of 1hnu by Molmil
CRYSTAL STRUCTURE OF PEROXISOMAL DELTA3-DELTA2-ENOYL-COA ISOMERASE FROM SACCHAROMYCES CEREVISIAE
Descriptor: 1,2-ETHANEDIOL, D3,D2-ENOYL COA ISOMERASE ECI1, PERRHENATE
Authors:Mursula, A.M, van Aalten, D.M.F, Hiltunen, J.K, Wierenga, R.K.
Deposit date:2000-12-08
Release date:2001-06-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The crystal structure of delta(3)-delta(2)-enoyl-CoA isomerase.
J.Mol.Biol., 309, 2001
1HNO
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BU of 1hno by Molmil
CRYSTAL STRUCTURE OF PEROXISOMAL DELTA3-DELTA2-ENOYL-COA ISOMERASE FROM SACCHAROMYCES CEREVISIAE
Descriptor: 1,2-ETHANEDIOL, D3,D2-ENOYL COA ISOMERASE ECI1
Authors:Mursula, A.M, van Aalten, D.M.F, Hiltunen, J.K, Wierenga, R.K.
Deposit date:2000-12-08
Release date:2001-06-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of delta(3)-delta(2)-enoyl-CoA isomerase.
J.Mol.Biol., 309, 2001
7AYC
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BU of 7ayc by Molmil
Crystal Structure of human mitochondrial 2-Enoyl Thioester Reductase (MECR) with single mutation G165Q
Descriptor: CHLORIDE ION, Enoyl-[acyl-carrier-protein] reductase, mitochondrial
Authors:Rahman, M.T, Koski, M.K, Autio, K.J, Kastaniotis, A.J, Wierenga, R.K, Hiltunen, J.K.
Deposit date:2020-11-12
Release date:2022-06-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:An engineered variant of MECR reductase reveals indispensability of long-chain acyl-ACPs for mitochondrial respiration.
Nat Commun, 14, 2023

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