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PDB: 231 件
7DO5
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Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(apo-form)
分子名称: SULFATE ION, Short-chain dehydrogenase/reductase SDR
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2020-12-12
公開日2021-02-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.836 Å)
主引用文献Crystal structure of l-rhamnose 1-dehydrogenase involved in the nonphosphorylative pathway of l-rhamnose metabolism in bacteria.
Febs Lett., 595, 2021
7CNR
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BU of 7cnr by Molmil
Crystal structure of Thermococcus kodakaraensis aconitase X (apo-form)
分子名称: DUF521 domain-containing protein, FE3-S4 CLUSTER, UPF0107 protein TK1248
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-08-03
公開日2021-06-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.39 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
7CNP
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Crystal structure of Agrobacterium tumefaciens aconitase X (apo-form)
分子名称: FE2/S2 (INORGANIC) CLUSTER, MAGNESIUM ION, cis-3-hydroxy-L-proline dehydratase
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-08-03
公開日2021-06-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
7CNS
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BU of 7cns by Molmil
Crystal structure of Thermococcus kodakaraensis aconitase X (holo-form)
分子名称: (3R)-3-HYDROXY-3-METHYL-5-(PHOSPHONOOXY)PENTANOIC ACID, DUF521 domain-containing protein, FE3-S4 CLUSTER, ...
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-08-03
公開日2021-06-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.902 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
7D2R
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Crystal structure of Agrobacterium tumefaciens aconitase X mutant - S449C/C510V
分子名称: FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, SODIUM ION, ...
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-09-17
公開日2021-06-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.005 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
6JNJ
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BU of 6jnj by Molmil
Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase (apo-form)
分子名称: L-arabinose 1-dehydrogenase (NAD(P)(+)), PHOSPHATE ION
著者Watanabe, Y, Iga, C, Watanabe, S.
登録日2019-03-16
公開日2019-05-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
6JNK
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Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase (NADP-bound form)
分子名称: L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Watanabe, Y, Iga, C, Watanabe, S.
登録日2019-03-16
公開日2019-05-15
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.
Febs Lett., 593, 2019
5B2C
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BU of 5b2c by Molmil
Crystal structure of Mumps virus hemagglutinin-neuraminidase
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, SULFATE ION
著者Kubota, M, Takeuchi, K, Watanabe, S, Ohno, S, Matsuoka, R, Kohda, D, Hiramatsu, H, Suzuki, Y, Nakayama, T, Terada, T, Shimizu, K, Shimizu, N, Yanagi, Y, Hashiguchi, T.
登録日2016-01-14
公開日2016-09-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.238 Å)
主引用文献Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
7DO7
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BU of 7do7 by Molmil
Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(NAD and L-rhamnose bound-form)
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Short-chain dehydrogenase/reductase SDR, beta-L-rhamnopyranose
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2020-12-12
公開日2021-02-03
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Crystal structure of l-rhamnose 1-dehydrogenase involved in the nonphosphorylative pathway of l-rhamnose metabolism in bacteria.
Febs Lett., 595, 2021
5B2D
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BU of 5b2d by Molmil
Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to 3-sialyllactose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Kubota, M, Takeuchi, K, Watanabe, S, Ohno, S, Matsuoka, R, Kohda, D, Hiramatsu, H, Suzuki, Y, Nakayama, T, Terada, T, Shimizu, K, Shimizu, N, Yanagi, Y, Hashiguchi, T.
登録日2016-01-14
公開日2016-09-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.177 Å)
主引用文献Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
2RNL
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BU of 2rnl by Molmil
Solution structure of the EGF-like domain from human Amphiregulin
分子名称: Amphiregulin
著者Qin, X, Hayashi, F, Terada, T, Shirouzu, M, Watanabe, S, Kigawa, T, Yabuta, N, Nojima, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-01-11
公開日2009-01-20
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Solution structure of the EGF-like domain from human Amphiregulin
To be Published
7CGR
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BU of 7cgr by Molmil
Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase E147A mutant (NADP and glycerol bound form)
分子名称: GLYCEROL, L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2020-07-02
公開日2020-07-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.093 Å)
主引用文献Crystal structure of bacterial L-arabinose 1-dehydrogenase in complex with L-arabinose and NADP+
Biochem.Biophys.Res.Commun., 530, 2020
7CGQ
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BU of 7cgq by Molmil
Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase E147A mutant (NADP and L-arabinose bound form)
分子名称: L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, alpha-L-arabinopyranose
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2020-07-02
公開日2020-07-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.208 Å)
主引用文献Crystal structure of bacterial L-arabinose 1-dehydrogenase in complex with L-arabinose and NADP+
Biochem.Biophys.Res.Commun., 530, 2020
7FGP
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BU of 7fgp by Molmil
Crystal structure of Aureimonas altamirenisis flavin-containing opine dehydrogenase (FAD-bound form)
分子名称: DI(HYDROXYETHYL)ETHER, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2021-07-27
公開日2022-08-31
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Structural basis for Flavin-containing opine dehydrogenase from Aureimonas altamirensis
To Be Published
5YY0
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BU of 5yy0 by Molmil
Crystal structure of the HyhL-HypA complex (form II)
分子名称: Cytosolic NiFe-hydrogenase, alpha subunit, Probable hydrogenase nickel incorporation protein HypA, ...
著者Kwon, S, Watanabe, S, Nishitani, Y, Miki, K.
登録日2017-12-07
公開日2018-06-20
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.243 Å)
主引用文献Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YXY
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BU of 5yxy by Molmil
Crystal structure of the HyhL-HypA complex (form I)
分子名称: Cytosolic NiFe-hydrogenase, alpha subunit, Probable hydrogenase nickel incorporation protein HypA, ...
著者Kwon, S, Watanabe, S, Nishitani, Y, Miki, K.
登録日2017-12-07
公開日2018-06-20
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.299 Å)
主引用文献Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1ITW
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BU of 1itw by Molmil
Crystal structure of the monomeric isocitrate dehydrogenase in complex with isocitrate and Mn
分子名称: ISOCITRIC ACID, Isocitrate dehydrogenase, MANGANESE (II) ION
著者Yasutake, Y, Watanabe, S, Yao, M, Takada, Y, Fukunaga, N, Tanaka, I.
登録日2002-02-12
公開日2002-12-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structure of the Monomeric Isocitrate Dehydrogenase: Evidence of a Protein Monomerization by a Domain Duplication
Structure, 10, 2002
5YXW
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BU of 5yxw by Molmil
Crystal structure of the prefusion form of measles virus fusion protein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, glycoprotein F1,measles virus fusion protein, ...
著者Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y.
登録日2017-12-07
公開日2018-02-21
最終更新日2022-03-23
実験手法X-RAY DIFFRACTION (2.776 Å)
主引用文献Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YZD
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BU of 5yzd by Molmil
Crystal structure of the prefusion form of measles virus fusion protein in complex with a fusion inhibitor peptide (FIP)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, glycoprotein F1,measles virus fusion protein, ...
著者Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y.
登録日2017-12-14
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.636 Å)
主引用文献Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YZC
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BU of 5yzc by Molmil
Crystal structure of the prefusion form of measles virus fusion protein in complex with a fusion inhibitor compound (AS-48)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-nitro-2-[(phenylacetyl)amino]benzamide, ...
著者Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y.
登録日2017-12-14
公開日2018-02-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.334 Å)
主引用文献Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7W7W
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BU of 7w7w by Molmil
E2 Pi of SERCA2b
分子名称: MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2, TETRAFLUOROALUMINATE ION
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7T
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BU of 7w7t by Molmil
The E1-BeF3- 2Ca2+ of SERCA2b
分子名称: BERYLLIUM TRIFLUORIDE ION, CALCIUM ION, MAGNESIUM ION, ...
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7U
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The 'Ca2+-unbound' BeF3- of SERCA2b
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7V
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BU of 7w7v by Molmil
'late' E2P of SERCA2b
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
登録日2021-12-06
公開日2022-12-14
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7X9U
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Type-II KH motif of human mitochondrial RbfA
分子名称: Putative ribosome-binding factor A, mitochondrial
著者Kuwasako, K, Suzuki, S, Furue, M, Takizawa, M, Takahashi, M, Tsuda, K, Nagata, T, Watanabe, S, Tanaka, A, Kobayashi, N, Kigawa, T, Guntert, P, Shirouzu, M, Yokoyama, S, Muto, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2022-03-16
公開日2023-01-25
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献1 H, 13 C, and 15 N resonance assignments and solution structures of the KH domain of human ribosome binding factor A, mtRbfA, involved in mitochondrial ribosome biogenesis.
Biomol.Nmr Assign., 16, 2022

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