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PDB: 368 件

6VWP
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BU of 6vwp by Molmil
Crystal structure of E. coli guanosine kinase in complex with ppGpp
分子名称: GUANOSINE, GUANOSINE-5',3'-TETRAPHOSPHATE, Inosine-guanosine kinase, ...
著者Wang, B, Grant, R.A, Laub, M.T.
登録日2020-02-20
公開日2020-10-07
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.45 Å)
主引用文献ppGpp Coordinates Nucleotide and Amino-Acid Synthesis in E. coli During Starvation.
Mol.Cell, 80, 2020
5UT9
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BU of 5ut9 by Molmil
Sperm whale myoglobin H64A with nitrite
分子名称: GLYCEROL, Myoglobin, NITRITE ION, ...
著者Wang, B, Thomas, L.M, Richter-Addo, G.B.
登録日2017-02-14
公開日2018-02-28
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Nitrosyl Myoglobins and Their Nitrite Precursors: Crystal Structural and Quantum Mechanics and Molecular Mechanics Theoretical Investigations of Preferred Fe -NO Ligand Orientations in Myoglobin Distal Pockets.
Biochemistry, 57, 2018
5UT7
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BU of 5ut7 by Molmil
Wild-type sperm whale myoglobin with nitrite
分子名称: GLYCEROL, Myoglobin, NITRITE ION, ...
著者Wang, B, Thomas, L.M, Richter-Addo, G.B.
登録日2017-02-14
公開日2018-02-28
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Nitrosyl Myoglobins and Their Nitrite Precursors: Crystal Structural and Quantum Mechanics and Molecular Mechanics Theoretical Investigations of Preferred Fe -NO Ligand Orientations in Myoglobin Distal Pockets.
Biochemistry, 57, 2018
5UTC
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BU of 5utc by Molmil
Deoxy form of sperm whale myoglobin V68A/I107Y
分子名称: GLYCEROL, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Wang, B, Thomas, L.M, Richter-Addo, G.B.
登録日2017-02-14
公開日2018-02-28
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Nitrosyl Myoglobins and Their Nitrite Precursors: Crystal Structural and Quantum Mechanics and Molecular Mechanics Theoretical Investigations of Preferred Fe -NO Ligand Orientations in Myoglobin Distal Pockets.
Biochemistry, 57, 2018
9GEF
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BU of 9gef by Molmil
Experimental localization of metal-binding sites reveals the role of metal ions in the delafloxacin-stabilized Streptococcus pneumoniae topoisomerase IV DNA cleavage complex
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CHLORIDE ION, ...
著者Wang, B, Najmudin, S, Pan, X.-S, Mykhaylyk, V, Orr, C, Wagner, A, Govada, L, Chayen, N.E, Fisher, L.M, Sanderson, M.R.
登録日2024-08-08
公開日2024-10-16
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Experimental localization of metal-binding sites reveals the role of metal ions in type II DNA topoisomerases.
Proc.Natl.Acad.Sci.USA, 121, 2024
8C7A
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BU of 8c7a by Molmil
Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
著者Wang, B, Zalar, M, Plavec, J, Sket, P.
登録日2023-01-14
公開日2023-11-22
実験手法SOLUTION NMR
主引用文献Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
8C7B
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BU of 8c7b by Molmil
Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
著者Wang, B, Zalar, M, Plavec, J, Sket, P.
登録日2023-01-14
公開日2023-11-22
実験手法SOLUTION NMR
主引用文献Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
6VWO
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BU of 6vwo by Molmil
Crystal structure of E. coli guanosine kinase
分子名称: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE, Inosine-guanosine kinase, ...
著者Wang, B, Grant, R.A, Laub, M.T.
登録日2020-02-20
公開日2020-10-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献ppGpp Coordinates Nucleotide and Amino-Acid Synthesis in E. coli During Starvation.
Mol.Cell, 80, 2020
1F2I
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BU of 1f2i by Molmil
COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA
分子名称: 5'-D(*AP*TP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*AP*T)-3', FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12, ZINC ION
著者Wang, B.S, Grant, R.A, Pabo, C.O.
登録日2000-05-25
公開日2001-09-14
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Selected peptide extension contacts hydrophobic patch on neighboring zinc finger and mediates dimerization on DNA.
Nat.Struct.Biol., 8, 2001
1FFO
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CRYSTAL STRUCTURE OF MURINE CLASS I H-2DB COMPLEXED WITH SYNTHETIC PEPTIDE GP33 (C9M/K1A)
分子名称: BETA-2 MICROGLOBULIN BETA CHAIN, H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ...
著者Wang, B, Sharma, A, Maile, R, Saad, M, Collins, E.J, Frelinger, J.A.
登録日2000-07-25
公開日2002-12-11
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Peptidic termini play a significant role in TCR recognition.
J.Immunol., 169, 2002
1FFP
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CRYSTAL STRUCTURE OF MURINE CLASS I H-2DB COMPLEXED WITH PEPTIDE GP33 (C9M/K1S)
分子名称: BETA-2 MICROGLOBULIN BETA CHAIN, H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ...
著者Wang, B, Sharma, A, Maile, R, Saad, M, Collins, E.J, Frelinger, J.A.
登録日2000-07-25
公開日2002-12-11
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Peptidic termini play a significant role in TCR recognition
J.IMMUNOL., 169, 2002
1FFN
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BU of 1ffn by Molmil
CRYSTAL STRUCTURE OF MURINE CLASS I H-2DB COMPLEXED WITH PEPTIDE GP33(C9M)
分子名称: BETA-2 MICROGLOBULIN, BETA CHAIN, H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, ...
著者Wang, B, Sharma, A, Maile, R, Saad, M, Collins, E.J, Frelinger, J.A.
登録日2000-07-25
公開日2002-12-11
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Peptidic termini play a significant role in TCR recognition
J.IMMUNOL., 169, 2002
8JIH
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BU of 8jih by Molmil
human telomere two-quartet G-quadruplex at pH 5.0
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
著者Wang, B, Galer, P, Plavec, J.
登録日2023-05-26
公開日2024-04-03
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献Unveiling the structural mechanism of a G-quadruplex pH-Driven switch.
Biochimie, 214, 2023
8JIC
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human telomere two-quartet G-quadruplex at pH 7.0
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
著者Wang, B, Galer, P, Plavec, J.
登録日2023-05-26
公開日2024-04-03
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献Unveiling the structural mechanism of a G-quadruplex pH-Driven switch.
Biochimie, 214, 2023
9CG2
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BU of 9cg2 by Molmil
DUF512 protein from Pyrococcus furiosus
分子名称: 5'-DEOXYADENOSINE, COBALAMIN, Elp3/MiaA/NifB-like radical SAM core domain-containing protein, ...
著者Wang, B, Radle, M.I, Peduzzi, O, Solinski, A, Knox, H.L, Cui, J, Maurya, R, Yennawar, N, Booker, S.J.
登録日2024-06-28
公開日2025-03-05
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献DUF512 protein from Pyrococcus furiosus
To Be Published
5ILE
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BU of 5ile by Molmil
H64A sperm whale myoglobin with a Fe-tolyl moiety
分子名称: Myoglobin, SULFATE ION, [3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)](3-methylphenyl)iron
著者Wang, B, Thomas, L.M, Richter-Addo, G.B.
登録日2016-03-03
公開日2016-09-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
5ILP
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BU of 5ilp by Molmil
H64Q sperm whale myoglobin with a Fe-tolyl moiety
分子名称: GLYCEROL, Myoglobin, SULFATE ION, ...
著者Wang, B, Thomas, L.M, Richter-Addo, G.B.
登録日2016-03-04
公開日2016-09-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
5ILM
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BU of 5ilm by Molmil
H64A sperm whale myoglobin with a Fe-chlorophenyl moiety
分子名称: (4-chlorophenyl)[3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)]iron, GLYCEROL, Myoglobin, ...
著者Wang, B, Thomas, L.M, Richter-Addo, G.B.
登録日2016-03-04
公開日2016-09-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
5ILR
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BU of 5ilr by Molmil
H64Q sperm whale myoglobin with a Fe-chlorophenyl moiety
分子名称: (4-chlorophenyl)[3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)]iron, GLYCEROL, Myoglobin, ...
著者Wang, B, Thomas, L.M, Richter-Addo, G.B.
登録日2016-03-04
公開日2016-09-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
6P3W
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BU of 6p3w by Molmil
Crystal structure of the Cyclin A-CDK2-ORC1 complex
分子名称: Cyclin-A2, Cyclin-dependent kinase 2, ORC1 Peptide, ...
著者Wang, B, Song, J.
登録日2019-05-24
公開日2019-07-31
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献Structural basis for the ORC1-Cyclin A association.
Protein Sci., 28, 2019
5IKS
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BU of 5iks by Molmil
Wild-type sperm whale myoglobin with a Fe-phenyl moiety
分子名称: GLYCEROL, Myoglobin, SULFATE ION, ...
著者Wang, B, Thomas, L.M, Richter-Addo, G.B.
登録日2016-03-03
公開日2016-09-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
5KD1
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BU of 5kd1 by Molmil
Sperm whale myoglobin H64A with nitrosoamphetamine
分子名称: GLYCEROL, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Wang, B, Guan, Y, Thomas, L.M, Richter-Addo, G.B.
登録日2016-06-07
公開日2017-05-10
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Nitrosoamphetamine binding to myoglobin and hemoglobin: Crystal structure of the H64A myoglobin-nitrosoamphetamine adduct.
Nitric Oxide, 67, 2017
6CZF
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BU of 6czf by Molmil
The structure of E. coli PurF in complex with ppGpp-Mg
分子名称: Amidophosphoribosyltransferase, GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION
著者Wang, B, Grant, R.A, Laub, M.T.
登録日2018-04-09
公開日2018-10-10
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.949 Å)
主引用文献Affinity-based capture and identification of protein effectors of the growth regulator ppGpp.
Nat. Chem. Biol., 15, 2019
5J62
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BU of 5j62 by Molmil
FMN-dependent Nitroreductase (CDR20291_0684) from Clostridium difficile R20291
分子名称: FLAVIN MONONUCLEOTIDE, GLYCEROL, PHOSPHATE ION, ...
著者Wang, B, Powell, S.M, Hessami, N, Najar, F.Z, Thomas, L.M, West, A.H, Karr, E.A, Richter-Addo, G.B.
登録日2016-04-04
公開日2016-09-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structures of two nitroreductases from hypervirulent Clostridium difficile and functionally related interactions with the antibiotic metronidazole.
Nitric Oxide, 60, 2016
7T1Y
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BU of 7t1y by Molmil
Structure of the Fbw7-Skp1-MycCdegron complex
分子名称: F-box/WD repeat-containing protein 7, Myc proto-oncogene protein C terminal degron, S-phase kinase-associated protein 1, ...
著者Wang, B, Rusnac, D.V, Clurman, B.E, Zheng, N.
登録日2021-12-02
公開日2022-02-16
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Two diphosphorylated degrons control c-Myc degradation by the Fbw7 tumor suppressor.
Sci Adv, 8, 2022

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件を2025-04-02に公開中

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