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PDB: 132 results

1G6O
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CRYSTAL STRUCTURE OF THE HELICOBACTER PYLORI ATPASE, HP0525, IN COMPLEX WITH ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CAG-ALPHA, DI(HYDROXYETHYL)ETHER
Authors:Yeo, H.J, Savvides, S.N, Herr, A.B, Lanka, E, Waksman, G, Midwest Center for Structural Genomics (MCSG)
Deposit date:2000-11-07
Release date:2001-01-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the hexameric traffic ATPase of the Helicobacter pylori type IV secretion system.
Mol.Cell, 6, 2000
2KT6
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Structural homology between the C-terminal domain of the PapC usher and its plug
Descriptor: Outer membrane usher protein papC
Authors:Ford, B, Rego, A, Ragan, T.J, Pinkner, J, Dodson, K, Driscoll, P.C, Hultgren, S, Waksman, G.
Deposit date:2010-01-19
Release date:2010-04-21
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structural Homology between the C-Terminal Domain of the PapC Usher and Its Plug.
J.Bacteriol., 192, 2010
2OFQ
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NMR Solution Structure of a complex between the VirB9/VirB7 interaction domains of the pKM101 type IV secretion system
Descriptor: TraN, TraO
Authors:Harris, R, Bayliss, R, Driscoll, P.C, Waksman, G.
Deposit date:2007-01-04
Release date:2007-01-23
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR structure of a complex between the VirB9/VirB7 interaction domains of the pKM101 type IV secretion system
Proc.Natl.Acad.Sci.Usa, 104, 2007
5NNY
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Crystal structure of the phosphatase domain from the Legionella effector WipB
Descriptor: WipB
Authors:Pinotsis, N, Waksman, G, Prevost, M.S.
Deposit date:2017-04-10
Release date:2017-09-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Legionella effector WipB is a translocated Ser/Thr phosphatase that targets the host lysosomal nutrient sensing machinery.
Sci Rep, 7, 2017
5O96
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Structure of the putative methyltransferase Lpg2936 from Legionella pneumophila in complex with the bound cofactor SAM
Descriptor: Ribosomal RNA small subunit methyltransferase E, S-ADENOSYLMETHIONINE
Authors:Pinotsis, N, Waksman, G.
Deposit date:2017-06-15
Release date:2017-11-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the Legionella pneumophila Lpg2936 in complex with the cofactor S-adenosyl-L-methionine reveals novel insights into the mechanism of RsmE family methyltransferases.
Protein Sci., 26, 2017
2J7L
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E. coli P Pilus chaperone PapD in complex with a pilus biogenesis inhibitor, pilicide 2c
Descriptor: (3R)-8-CYCLOPROPYL-6-(MORPHOLIN-4-YLMETHYL)-7-(1-NAPHTHYLMETHYL)-5-OXO-2,3-DIHYDRO-5H-[1,3]THIAZOLO[3,2-A]PYRIDINE-3-CARBOXYLIC ACID, CHAPERONE PROTEIN PAPD
Authors:Remaut, H, Pinkner, J.S, Hultgren, S.J, Almqvist, F, Waksman, G.
Deposit date:2006-10-12
Release date:2006-11-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Rationally Designed Small Compounds Inhibit Pilus Biogenesis in Uropathogenic Bacteria.
Proc.Natl.Acad.Sci.USA, 103, 2006
1N0L
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Crystal structure of the PapD chaperone (C-terminally 6x histidine-tagged) bound to the PapE pilus subunit (N-terminal-deleted) from uropathogenic E. coli
Descriptor: Chaperone protein PapD, mature Fimbrial protein PapE
Authors:Sauer, F.G, Pinkner, J.S, Waksman, G, Hultgren, S.J.
Deposit date:2002-10-14
Release date:2002-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Chaperone priming of pilus subunits facilitates a topological transition that drives fiber formation
Cell(Cambridge,Mass.), 111, 2002
3CL3
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Crystal Structure of a vFLIP-IKKgamma complex: Insights into viral activation of the IKK signalosome
Descriptor: NF-kappa-B essential modulator, ORF K13
Authors:Bagneris, C, Ageichik, A.V, Cronin, N, Boshoff, C, Waksman, G, Barrett, T.
Deposit date:2008-03-18
Release date:2008-06-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of a vFlip-IKKgamma complex: insights into viral activation of the IKK signalosome.
Mol.Cell, 30, 2008
1N12
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Crystal structure of the PapE (N-terminal-deleted) pilus subunit bound to a peptide corresponding to the N-terminal extension of the PapK pilus subunit (residues 1-11) from uropathogenic E. coli
Descriptor: Peptide corresponding to the N-terminal extension of protein PapK, mature Fimbrial protein PapE
Authors:Sauer, F.G, Pinkner, J.S, Waksman, G, Hultgren, S.J.
Deposit date:2002-10-16
Release date:2002-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Chaperone priming of pilus subunits facilitates a topological transition that drives fiber formation
Cell(Cambridge,Mass.), 111, 2002
5N8O
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Cryo EM structure of the conjugative relaxase TraI of the F/R1 plasmid system
Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA helicase I
Authors:Ilangovan, A, Zanetti, G, Waksman, G.
Deposit date:2017-02-23
Release date:2017-05-03
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM Structure of a Relaxase Reveals the Molecular Basis of DNA Unwinding during Bacterial Conjugation
Cell, 169, 2017
6EXC
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BU of 6exc by Molmil
Crystal structure of DotM cytoplasmic domain (residues 153-380),R314E/R315E
Descriptor: IcmP (DotM)
Authors:Meir, A, Waksman, G.
Deposit date:2017-11-07
Release date:2018-02-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Legionella DotM structure reveals a role in effector recruiting to the Type 4B secretion system.
Nat Commun, 9, 2018
6EXD
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Crystal structure of DotM cytoplasmic domain (residues 153-380) SeMet derivative
Descriptor: IcmP (DotM)
Authors:Meir, A, Waksman, G.
Deposit date:2017-11-07
Release date:2018-02-14
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Legionella DotM structure reveals a role in effector recruiting to the Type 4B secretion system.
Nat Commun, 9, 2018
6EXB
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Crystal structure of DotM cytoplasmic domain (residues 153-380), native form
Descriptor: GLYCEROL, IcmP (DotM)
Authors:Meir, A, Waksman, G.
Deposit date:2017-11-07
Release date:2018-02-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Legionella DotM structure reveals a role in effector recruiting to the Type 4B secretion system.
Nat Commun, 9, 2018
2THF
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BU of 2thf by Molmil
STRUCTURE OF HUMAN ALPHA-THROMBIN Y225F MUTANT BOUND TO D-PHE-PRO-ARG-CHLOROMETHYLKETONE
Descriptor: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, SODIUM ION, THROMBIN HEAVY CHAIN, ...
Authors:Caccia, S, Futterer, K, Di Cera, E, Waksman, G.
Deposit date:1999-01-26
Release date:1999-03-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Unexpected crucial role of residue 225 in serine proteases.
Proc.Natl.Acad.Sci.USA, 96, 1999
6GEF
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BU of 6gef by Molmil
X-ray structure of the Yersinia pseudotuberculosis ATPase DotB
Descriptor: Type IV secretion system protein DotB
Authors:Prevost, M.S, Waksman, G.
Deposit date:2018-04-26
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:X-ray crystal structures of the type IVb secretion system DotB ATPases.
Protein Sci., 27, 2018
2UY6
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BU of 2uy6 by Molmil
Crystal structure of the P pilus rod subunit PapA
Descriptor: PAP FIMBRIAL MAJOR PILIN PROTEIN, PERIPLASMID CHAPERONE PAPD PROTEIN
Authors:Verger, D, Bullitt, E, Hultgren, S.J, Waksman, G.
Deposit date:2007-04-02
Release date:2007-05-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the P Pilus Rod Subunit Papa.
Plos Pathog., 3, 2007
1IS0
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BU of 1is0 by Molmil
Crystal Structure of a Complex of the Src SH2 Domain with Conformationally Constrained Peptide Inhibitor
Descriptor: AY0 GLU GLU ILE peptide, Tyrosine-protein kinase transforming protein SRC
Authors:Davidson, J.P, Lubman, O, Rose, T, Waksman, G, Martin, S.F.
Deposit date:2001-11-02
Release date:2002-02-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Calorimetric and structural studies of 1,2,3-trisubstituted cyclopropanes as conformationally constrained peptide inhibitors of Src SH2 domain binding.
J.Am.Chem.Soc., 124, 2002
1PDK
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BU of 1pdk by Molmil
PAPD-PAPK CHAPERONE-PILUS SUBUNIT COMPLEX FROM E.COLI P PILUS
Descriptor: PROTEIN (CHAPERONE PROTEIN PAPD), PROTEIN (PROTEIN PAPK)
Authors:Fuetterer, K, Sauer, F.G, Hultgren, S.J, Waksman, G.
Deposit date:1999-03-29
Release date:1999-08-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of chaperone function and pilus biogenesis.
Science, 285, 1999
2BHM
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BU of 2bhm by Molmil
Crystal structure of VirB8 from Brucella suis
Descriptor: TYPE IV SECRETION SYSTEM PROTEIN VIRB8
Authors:Bayliss, R, Baron, C, Waksman, G.
Deposit date:2005-01-14
Release date:2005-03-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of Two Core Subunits of the Bacterial Type Iv Secretion System, Virb8 from Brucella Suis and Comb10 from Helicobacter Pylori
Proc.Natl.Acad.Sci.USA, 102, 2005
3CRF
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BU of 3crf by Molmil
Electron Microscopy model of the Saf Pilus- Type B
Descriptor: Outer membrane protein
Authors:Salih, O, Remaut, H, Waksman, G, Orlova, E.V.
Deposit date:2008-04-07
Release date:2008-05-20
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Structural analysis of the Saf pilus by electron microscopy and image processing.
J.Mol.Biol., 379, 2008
5O95
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BU of 5o95 by Molmil
Structure of the putative methyltransferase Lpg2936 from Legionella pneumophila
Descriptor: Ribosomal RNA small subunit methyltransferase E
Authors:Pinotsis, N, Waksman, G.
Deposit date:2017-06-15
Release date:2017-11-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.491 Å)
Cite:Crystal structure of the Legionella pneumophila Lpg2936 in complex with the cofactor S-adenosyl-L-methionine reveals novel insights into the mechanism of RsmE family methyltransferases.
Protein Sci., 26, 2017
5N6X
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Crystal structure of the Legionella effector WipA
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, BETA-MERCAPTOETHANOL, BROMIDE ION, ...
Authors:Pinotsis, N, Waksman, G.
Deposit date:2017-02-16
Release date:2017-04-19
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of the WipA protein reveals a novel tyrosine protein phosphatase effector from Legionella pneumophila.
J. Biol. Chem., 292, 2017
3CRE
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BU of 3cre by Molmil
Electron Microscopy model of the Saf Pilus- Type A
Descriptor: Outer membrane protein
Authors:Salih, O, Remaut, H, Waksman, G, Orlova, E.V.
Deposit date:2008-04-07
Release date:2008-05-20
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Structural analysis of the Saf pilus by electron microscopy and image processing.
J.Mol.Biol., 379, 2008
2BHV
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BU of 2bhv by Molmil
Structure of ComB10 of the Com Type IV secretion system of Helicobacter pylori
Descriptor: COMB10
Authors:Terradot, L, Oomen, C, Bayliss, R, Leonard, G, Waksman, G.
Deposit date:2005-01-18
Release date:2005-03-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of Two Core Subunits of the Bacterial Type Iv Secretion System, Virb8 from Brucella Suis and Comb10 from Helicobacter Pylori
Proc.Natl.Acad.Sci.USA, 102, 2005
1KA8
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Crystal Structure of the Phage P4 Origin-Binding Domain
Descriptor: putative P4-specific DNA primase
Authors:Yeo, H.J, Ziegelin, G, Korolev, S, Calendar, R, Lanka, E, Waksman, G.
Deposit date:2001-10-31
Release date:2002-04-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Phage P4 origin-binding domain structure reveals a mechanism for regulation of DNA-binding activity by homo- and heterodimerization of winged helix proteins.
Mol.Microbiol., 43, 2002

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