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PDB: 174 件
2E3Q
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BU of 2e3q by Molmil
Crystal structure of CERT START domain in complex with C18-ceramide (P212121)
分子名称: DIMETHYL SULFOXIDE, Lipid-transfer protein CERT, N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)STEARAMIDE
著者Kudo, N, Kumagai, K, Wakatsuki, S, Nishijima, M, Hanada, K, Kato, R.
登録日2006-11-28
公開日2007-12-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3U3V
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BU of 3u3v by Molmil
The S-SAD phased crystal structure of the ecto-domain of Death Receptor 6 (DR6)
分子名称: Tumor necrosis factor receptor superfamily member 21
著者Ru, H, Zhao, L.X, Ding, W, Jiao, L.Y, Shaw, N, Zhang, L.G, Hung, L.W, Matsugaki, N, Wakatsuki, S, Liu, Z.J.
登録日2011-10-06
公開日2012-05-02
最終更新日2012-07-11
実験手法X-RAY DIFFRACTION (2.96 Å)
主引用文献S-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS
Acta Crystallogr.,Sect.D, 68, 2012
2EAD
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Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complex with substrate
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Alpha-fucosidase, CALCIUM ION, ...
著者Nagae, M, Tsuchiya, A, Katayama, T, Yamamoto, K, Wakatsuki, S, Kato, R.
登録日2007-01-31
公開日2007-04-24
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
3BC1
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BU of 3bc1 by Molmil
Crystal Structure of the complex Rab27a-Slp2a
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein Rab-27A, ...
著者Chavas, L.M.G, Ihara, K, Kawasaki, M, Wakatsuki, S.
登録日2007-11-12
公開日2008-09-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Elucidation of Rab27 recruitment by its effectors: structure of Rab27a bound to Exophilin4/Slp2-a
Structure, 16, 2008
2Z44
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Crystal Structure of Selenomethionine-labeled ORF134
分子名称: ORF134
著者Tomimoto, Y, Ihara, K, Onizuka, T, Kanai, S, Ashida, H, Yokota, A, Tanaka, S, Miyasaka, H, Yamada, Y, Kato, R, Wakatsuki, S.
登録日2007-06-12
公開日2008-06-24
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of ORF134
To be Published
2Z46
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BU of 2z46 by Molmil
Crystal Structure of Native-ORF134
分子名称: ORF134
著者Tomimoto, Y, Ihara, K, Onizuka, T, Kanai, S, Ashida, H, Yokota, A, Tanaka, S, Miyasaka, H, Yamada, Y, Kato, R, Wakatsuki, S.
登録日2007-06-12
公開日2008-06-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.97 Å)
主引用文献Crystal Structure of ORF134
To be Published
2ZVO
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NEMO CoZi domain in complex with diubiquitin in C2 space group
分子名称: NF-kappa-B essential modulator, UBC protein
著者Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I.
登録日2008-11-12
公開日2009-03-24
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
2DWX
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BU of 2dwx by Molmil
Co-crystal Structure Analysis of GGA1-GAE with the WNSF motif
分子名称: ADP-ribosylation factor-binding protein GGA1, hinge peptide from ADP-ribosylation factor binding protein GGA1
著者Inoue, M, Shiba, T, Yamada, Y, Ihara, K, Kawasaki, M, Kato, R, Nakayama, K, Wakatsuki, S.
登録日2006-08-21
公開日2007-04-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Molecular Basis for Autoregulatory Interaction Between GAE Domain and Hinge Region of GGA1
Traffic, 8, 2007
2DUQ
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Crystal structure of VIP36 exoplasmic/lumenal domain, Ca2+/Man-bound form
分子名称: CALCIUM ION, CHLORIDE ION, Vesicular integral-membrane protein VIP36, ...
著者Satoh, T, Cowieson, N.P, Kato, R, Wakatsuki, S.
登録日2006-07-25
公開日2007-07-24
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36
J.Biol.Chem., 282, 2007
2DWY
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BU of 2dwy by Molmil
Crystal Structure Analysis of GGA1-GAE
分子名称: ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA1
著者Inoue, M, Shiba, T, Yamada, Y, Ihara, K, Kawasaki, M, Kato, R, Nakayama, K, Wakatsuki, S.
登録日2006-08-21
公開日2007-04-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular Basis for Autoregulatory Interaction Between GAE Domain and Hinge Region of GGA1
Traffic, 8, 2007
2ZVN
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BU of 2zvn by Molmil
NEMO CoZi domain incomplex with diubiquitin in P212121 space group
分子名称: NF-kappa-B essential modulator, UBC protein
著者Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I.
登録日2008-11-12
公開日2009-03-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
2EAB
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BU of 2eab by Molmil
Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum (apo form)
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-fucosidase, ...
著者Nagae, M, Tsuchiya, A, Katayama, T, Yamamoto, K, Wakatsuki, S, Kato, R.
登録日2007-01-31
公開日2007-04-24
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2Z5H
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BU of 2z5h by Molmil
Crystal structure of the head-to-tail junction of tropomyosin complexed with a fragment of TnT
分子名称: General control protein GCN4 and Tropomyosin alpha-1 chain, Tropomyosin alpha-1 chain and General control protein GCN4, Troponin T, ...
著者Murakami, K, Nozawa, K, Tomii, K, Kudou, N, Igarashi, N, Shirakihara, Y, Wakatsuki, S, Stewart, M, Yasunaga, T, Wakabayashi, T.
登録日2007-07-12
公開日2008-04-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Structural basis for tropomyosin overlap in thin (actin) filaments and the generation of a molecular swivel by troponin-T
Proc.Natl.Acad.Sci.USA, 105, 2008
2Z45
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BU of 2z45 by Molmil
Crystal Structure of Zn-bound ORF134
分子名称: ORF134, ZINC ION
著者Tomimoto, Y, Ihara, K, Onizuka, T, Kanai, S, Ashida, H, Yokota, A, Tanaka, S, Miyasaka, H, Yamada, Y, Kato, R, Wakatsuki, S.
登録日2007-06-12
公開日2008-06-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal Structure of ORF134
To be Published
2Z5I
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BU of 2z5i by Molmil
Crystal structure of the head-to-tail junction of tropomyosin
分子名称: General control protein GCN4 and Tropomyosin alpha-1 chain, MAGNESIUM ION, Tropomyosin alpha-1 chain and General control protein GCN4
著者Murakami, K, Nozawa, K, Tomii, K, Kudou, N, Igarashi, N, Shirakihara, Y, Wakatsuki, S, Stewart, M, Yasunaga, T, Wakabayashi, T.
登録日2007-07-12
公開日2008-04-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis for tropomyosin overlap in thin (actin) filaments and the generation of a molecular swivel by troponin-T
Proc.Natl.Acad.Sci.USA, 105, 2008
3AJ4
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BU of 3aj4 by Molmil
Crystal structure of the PH domain of Evectin-2 from human complexed with O-phospho-L-serine
分子名称: 1,2-ETHANEDIOL, PHOSPHOSERINE, Pleckstrin homology domain-containing family B member 2
著者Okazaki, S, Kato, R, Wakatsuki, S.
登録日2010-05-21
公開日2011-05-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Intracellular phosphatidylserine is essential for retrograde membrane traffic through endosomes
Proc.Natl.Acad.Sci.USA, 108, 2011
2BE5
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BU of 2be5 by Molmil
Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with inhibitor tagetitoxin
分子名称: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
著者Vassylyev, D.G, Svetlov, V, Vassylyeva, M.N, Perederina, A, Igarashi, N, Matsugaki, N, Wakatsuki, S, Artsimovitch, I, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-10-22
公開日2005-11-08
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis for transcription inhibition by tagetitoxin
Nat.Struct.Mol.Biol., 12, 2005
2D3G
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BU of 2d3g by Molmil
Double sided ubiquitin binding of Hrs-UIM
分子名称: ubiquitin, ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase substrate
著者Hirano, S, Kawasaki, M, Kato, R, Wakatsuki, S.
登録日2005-09-28
公開日2005-12-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting
Nat.Struct.Mol.Biol., 13, 2006
2EAL
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BU of 2eal by Molmil
Crystal structure of human galectin-9 N-terminal CRD in complex with Forssman pentasaccharide
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-beta-D-galactopyranose, Galectin-9
著者Nagae, M, Nakamura-Tsuruta, S, Nishi, N, Nakamura, T, Hirabayashi, J, Wakatsuki, S, Kato, R.
登録日2007-01-31
公開日2007-09-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural analysis of the human galectin-9 N-terminal carbohydrate recognition domain reveals unexpected properties that differ from the mouse orthologue.
J.Mol.Biol., 375, 2008
2EAK
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Crystal structure of human galectin-9 N-terminal CRD in complex with lactose
分子名称: (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, GLYCEROL, Galectin-9, ...
著者Nagae, M, Nakamura-Tsuruta, S, Nishi, N, Nakamura, T, Hirabayashi, J, Wakatsuki, S, Kato, R.
登録日2007-01-31
公開日2007-09-25
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Structural analysis of the human galectin-9 N-terminal carbohydrate recognition domain reveals unexpected properties that differ from the mouse orthologue.
J.Mol.Biol., 375, 2008
2D7R
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BU of 2d7r by Molmil
Crystal structure of pp-GalNAc-T10 complexed with GalNAc-Ser on lectin domain
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kubota, T, Shiba, T, Sugioka, S, Kato, R, Wakatsuki, S, Narimatsu, H.
登録日2005-11-25
公開日2006-11-07
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10)
J.Mol.Biol., 359, 2006
2D7I
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Crystal structure of pp-GalNAc-T10 with UDP, GalNAc and Mn2+
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kubota, T, Shiba, T, Sugioka, S, Kato, R, Wakatsuki, S, Narimatsu, H.
登録日2005-11-21
公開日2006-11-07
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10)
J.Mol.Biol., 359, 2006
2DX5
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BU of 2dx5 by Molmil
The complex structure between the mouse EAP45-GLUE domain and ubiquitin
分子名称: Ubiquitin, Vacuolar protein sorting protein 36
著者Hirano, S, Suzuki, N, Slagsvold, T, Kawasaki, M, Trambaiolo, D, Kato, R, Stenmark, H, Wakatsuki, S.
登録日2006-08-24
公開日2006-10-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Structural basis of ubiquitin recognition by mammalian Eap45 GLUE domain
Nat.Struct.Mol.Biol., 13, 2006
2D0J
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Crystal Structure of Human GlcAT-S Apo Form
分子名称: Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2
著者Shiba, T, Kakuda, S, Ishiguro, M, Oka, S, Kawasaki, T, Wakatsuki, S, Kato, R.
登録日2005-08-03
公開日2006-07-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of GlcAT-S, a human glucuronyltransferase, involved in the biosynthesis of the HNK-1 carbohydrate epitope
To be published

226707

件を2024-10-30に公開中

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