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PDB: 35 results

1DOQ
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THE C-TERMINAL DOMAIN OF THE RNA POLYMERASE ALPHA SUBUNIT FROM THERMUS THERMOPHILUS
Descriptor: RNA POLYMERASE ALPHA SUBUNIT
Authors:Wada, T, Yamazaki, T, Kyogoku, Y.
Deposit date:1999-12-21
Release date:2000-01-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The structure and the characteristic DNA binding property of the C-terminal domain of the RNA polymerase alpha subunit from Thermus thermophilus.
J.Biol.Chem., 275, 2000
1UEK
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Crystal structure of 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase
Descriptor: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase
Authors:Wada, T, Kuramitsu, S, Yokoyama, S, Tame, J.R.H, Park, S.Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-17
Release date:2003-06-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, an Enzyme in the Non-mevalonate Pathway of Isoprenoid Synthesis.
J.Biol.Chem., 278, 2003
1IUL
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The structure of cell-free ID.343 from Thermus thermophilus
Descriptor: hypothetical protein TT1466
Authors:Wada, T, Shirouzu, M, Park, S.-Y, Tame, J.R, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-05
Release date:2003-07-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a conserved CoA-binding protein synthesized by a cell-free system.
Acta Crystallogr.,Sect.D, 59, 2003
1IUK
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The structure of native ID.343 from Thermus thermophilus
Descriptor: hypothetical protein TT1466
Authors:Wada, T, Shirouzu, M, Park, S.-Y, Tame, J.R, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-05
Release date:2003-07-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of a conserved CoA-binding protein synthesized by a cell-free system.
Acta Crystallogr.,Sect.D, 59, 2003
1VCF
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Crystal Structure of IPP isomerase at I422
Descriptor: CADMIUM ION, FLAVIN MONONUCLEOTIDE, isopentenyl-diphosphate delta-isomerase
Authors:Wada, T, Park, S.-Y, Tame, R.H, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-08
Release date:2005-04-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of IPP isomerase at I422
To be Published
1VCG
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Crystal Structure of IPP isomerase at P43212
Descriptor: FLAVIN MONONUCLEOTIDE, isopentenyl-diphosphate delta-isomerase
Authors:Wada, T, Park, S.-Y, Tame, R.H, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-08
Release date:2005-04-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Crystal Structure of IPP isomerase at P43212
To be Published
1IUJ
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BU of 1iuj by Molmil
The structure of TT1380 protein from thermus thermophilus
Descriptor: ZINC ION, hypothetical protein TT1380
Authors:Wada, T, Shirouzu, M, Park, S.-Y, Tame, J.R.H, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-05
Release date:2003-09-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the conserved hypothetical protein TT1380 from Thermus thermophilus HB8
Proteins, 55, 2004
3AM6
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BU of 3am6 by Molmil
Crystal structure of the proton pumping rhodopsin AR2 from marine alga Acetabularia acetabulum
Descriptor: CHOLESTEROL, RETINAL, rhodopsin-2
Authors:Wada, T, Yokoyama, S.
Deposit date:2010-08-16
Release date:2011-07-06
Last modified:2011-12-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the eukaryotic light-driven proton-pumping rhodopsin, Acetabularia rhodopsin II, from marine alga
J.Mol.Biol., 411, 2011
1X3K
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BU of 1x3k by Molmil
Crystal structure of a hemoglobin component (TA-V) from Tokunagayusurika akamusi
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, hemoglobin component V
Authors:Kuwada, T, Hasegawa, T, Sato, S, Sato, I, Ishikawa, K, Takagi, T, Shishikura, F.
Deposit date:2005-05-09
Release date:2005-05-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structures of two hemoglobin components from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera).
Gene, 398, 2007
1X46
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Crystal structure of a hemoglobin component (TA-VII) from Tokunagayusurika akamusi
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, hemoglobin component VII
Authors:Kuwada, T, Hasegawa, T, Sato, S, Sato, I, Ishikawa, K, Takagi, T, Shishikura, F.
Deposit date:2005-05-14
Release date:2005-05-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of two hemoglobin components from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera).
Gene, 398, 2007
1V75
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Crystal structure of hemoglobin D from the Aldabra giant tortoise (Geochelone gigantea) at 2.0 A resolution
Descriptor: Hemoglobin A and D beta chain, Hemoglobin D alpha chain, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Satoh, I, Ishikawa, K, Shishikura, F.
Deposit date:2003-12-12
Release date:2003-12-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystallization and preliminary X-ray diffraction study of hemoglobin D from the Aldabra giant tortoise, Geochelone gigantea.
Protein Pept.Lett., 10, 2003
1WMU
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BU of 1wmu by Molmil
Crystal Structure of Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea, at 1.65 A resolution
Descriptor: Hemoglobin A and D beta chain, Hemoglobin D alpha chain, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Satoh, I, Ishikawa, K, Shishikura, F.
Deposit date:2004-07-21
Release date:2004-08-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure of Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea, at 1.65 A resolution
To be Published
3ARJ
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BU of 3arj by Molmil
Cl- binding hemoglobin component V form Propsilocerus akamusi under 500 mM NaCl at pH 4.6
Descriptor: CHLORIDE ION, Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2010-12-02
Release date:2011-04-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Involvement of the distal Arg residue in Cl- binding of midge larval haemoglobin
Acta Crystallogr.,Sect.D, 67, 2011
3ARK
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BU of 3ark by Molmil
Cl- binding hemoglobin component V form Propsilocerus akamusi under 1 M NaCl at pH 4.6
Descriptor: CHLORIDE ION, Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2010-12-02
Release date:2011-04-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Involvement of the distal Arg residue in Cl- binding of midge larval haemoglobin
Acta Crystallogr.,Sect.D, 67, 2011
3ARL
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BU of 3arl by Molmil
Cl- binding hemoglobin component V form Propsilocerus akamusi under 500 mM NaCl at pH 5.5
Descriptor: CHLORIDE ION, Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2010-12-02
Release date:2011-04-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Involvement of the distal Arg residue in Cl- binding of midge larval haemoglobin
Acta Crystallogr.,Sect.D, 67, 2011
3A5A
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BU of 3a5a by Molmil
Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH5.6 coordinates)
Descriptor: Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2009-08-05
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera)
Acta Crystallogr.,Sect.D, 66, 2010
3A5B
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BU of 3a5b by Molmil
Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH6.5 coordinates)
Descriptor: Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2009-08-05
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera)
Acta Crystallogr.,Sect.D, 66, 2010
3A5G
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BU of 3a5g by Molmil
Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)
Descriptor: CARBON MONOXIDE, Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2009-08-06
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera)
Acta Crystallogr.,Sect.D, 66, 2010
3A9M
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BU of 3a9m by Molmil
Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH9.0 coordinates)
Descriptor: CARBON MONOXIDE, Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2009-10-30
Release date:2010-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera)
Acta Crystallogr.,Sect.D, 66, 2010
2ZWJ
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BU of 2zwj by Molmil
Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH4.6 coordinates)
Descriptor: Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2008-12-13
Release date:2009-01-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera)
Acta Crystallogr.,Sect.D, 66, 2010
2Z6N
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BU of 2z6n by Molmil
Crystal Structure of Carbonmonoxy Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea
Descriptor: CARBON MONOXIDE, Hemoglobin A/D subunit beta, Hemoglobin D subunit alpha, ...
Authors:Kuwada, T, Hasegawa, T, Sato, I, Ishikawa, K, Shishikura, F.
Deposit date:2007-08-04
Release date:2007-08-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal Structure of the Ligated Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea
To be Published
3VQU
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CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN IN COMPLEX WITH 4-[(4-amino-5-cyano-6-ethoxypyridin-2- yl)amino]benzamide
Descriptor: 4-[(4-amino-5-cyano-6-ethoxypyridin-2-yl)amino]benzamide, Dual specificity protein kinase TTK, IODIDE ION
Authors:Kusakabe, K, Ide, N, Daigo, Y, Itoh, T, Higashino, K, Okano, Y, Tadano, G, Tachibana, Y, Sato, Y, Inoue, M, Wada, T, Iguchi, M, Kanazawa, T, Ishioka, Y, Dohi, K, Tagashira, S, Kido, Y, Sakamoto, S, Yasuo, K, Maeda, M, Yamamoto, T, Higaki, M, Endoh, T, Ueda, K, Shiota, T, Murai, H, Nakamura, Y.
Deposit date:2012-03-30
Release date:2012-06-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Diaminopyridine-based potent and selective mps1 kinase inhibitors binding to an unusual flipped-Peptide conformation.
Acs Med.Chem.Lett., 3, 2012
1WDJ
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BU of 1wdj by Molmil
Crystal structure of TT1808 from Thermus thermophilus HB8
Descriptor: hypothetical protein TT1808
Authors:Idaka, M, Wada, T, Murayama, K, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-17
Release date:2004-11-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure Of TT1808 From Thermus Thermophilus HB8
To be published
7E0E
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BU of 7e0e by Molmil
Crystal structure of mouse interferon alpha2 at 2.1 angstrom resolution
Descriptor: GLYCEROL, Interferon alpha-2, PHOSPHATE ION
Authors:Watanabe, H, Yabe-Wada, T, Unno, M.
Deposit date:2021-01-27
Release date:2021-04-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Detailed structure of mouse interferon alpha 2 and its interaction with Sortilin.
J.Biochem., 170, 2021
4EU2
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BU of 4eu2 by Molmil
Crystal structure of 20s proteasome with novel inhibitor K-7174
Descriptor: 1,4-bis[(4E)-5-(3,4,5-trimethoxyphenyl)pent-4-en-1-yl]-1,4-diazepane, Proteasome component C1, Proteasome component C11, ...
Authors:Kikuchi, J, Shibayama, N, Yamada, S, Wada, T, Nobuyoshi, M, Izumi, T, Akutsu, M, Kano, Y, Ohki, M, Sugiyama, K, Park, S.-Y, Furukawa, Y.
Deposit date:2012-04-25
Release date:2013-05-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.509 Å)
Cite:Homopiperazine derivatives as a novel class of proteasome inhibitors with a unique mode of proteasome binding.
Plos One, 8, 2013

 

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