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PDB: 1404 results

3SPK
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BU of 3spk by Molmil
Tipranavir in Complex with a Human Immunodeficiency Virus Type 1 Protease Variant
Descriptor: HIV-1 protease, N-(3-{(1R)-1-[(6R)-4-HYDROXY-2-OXO-6-PHENETHYL-6-PROPYL-5,6-DIHYDRO-2H-PYRAN-3-YL]PROPYL}PHENYL)-5-(TRIFLUOROMETHYL)-2-PYRIDINESULFONAMIDE
Authors:Wang, Y, Liu, Z, Brunzelle, J.S, Kovari, I.A, Kovari, L.C.
Deposit date:2011-07-01
Release date:2011-10-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:The higher barrier of darunavir and tipranavir resistance for HIV-1 protease.
Biochem.Biophys.Res.Commun., 412, 2011
7XJW
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BU of 7xjw by Molmil
Crystal structure of canine coronavirus main protease in complex with GC376
Descriptor: (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, ORF1a polyprotein
Authors:Wang, Y.C, Yang, C.S, Hou, M.H, Tsai, C.L, Chiu, Y.F, Chen, Y.
Deposit date:2022-04-18
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A Structural Comparison of SARS-CoV-2 Main Protease and Animal Coronaviral Main Protease Reveals Species-Specific Ligand Binding and Dimerization Mechanism.
Int J Mol Sci, 23, 2022
7Y3E
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BU of 7y3e by Molmil
Cryo-EM structure of Arabidopsis thaliana SOS1 in an occluded state
Descriptor: HEXADECANE, Sodium/hydrogen exchanger 7
Authors:Wang, Y, Zhao, Y, Gao, Y.
Deposit date:2022-06-10
Release date:2023-08-09
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Architecture and autoinhibitory mechanism of the plasma membrane Na + /H + antiporter SOS1 in Arabidopsis.
Nat Commun, 14, 2023
2JOW
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BU of 2jow by Molmil
Differences in the electrostatic surfaces of the type III secretion needle proteins
Descriptor: Protein prgI
Authors:Wang, Y, Ouellette, A.N, Egan, C.W, De Guzman, R.N.
Deposit date:2007-04-06
Release date:2007-07-24
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Differences in the Electrostatic Surfaces of the Type III Secretion Needle Proteins PrgI, BsaL, and MxiH
J.Mol.Biol., 371, 2007
7CAM
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BU of 7cam by Molmil
SARS-CoV-2 main protease (Mpro) apo structure (space group P212121)
Descriptor: 3C-like proteinase
Authors:Wang, Y.C, Yang, C.S, Hou, M.H, Tsai, C.L, Chou, Y.Z, Chen, Y.
Deposit date:2020-06-09
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural basis of SARS-CoV-2 main protease inhibition by a broad-spectrum anti-coronaviral drug.
Am J Cancer Res, 10, 2020
6JPS
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BU of 6jps by Molmil
Human H chain ferritin mutant-MBP
Descriptor: Ferritin
Authors:Wang, Y, Zang, J, Chen, H.
Deposit date:2019-03-27
Release date:2019-10-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.503 Å)
Cite:Re-designing ferritin nanocages for mercuric ion detection.
Analyst, 144, 2019
7F9Y
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BU of 7f9y by Molmil
ghrelin-bound ghrelin receptor in complex with Gq
Descriptor: CHOLESTEROL, Engineered G-alpha-q subunit, Ghrelin-28, ...
Authors:Wang, Y, Zhuang, Y, Xu, P, Xu, H.E, Jiang, Y.
Deposit date:2021-07-05
Release date:2021-08-18
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Molecular recognition of an acyl-peptide hormone and activation of ghrelin receptor.
Nat Commun, 12, 2021
7F9Z
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BU of 7f9z by Molmil
GHRP-6-bound ghrelin receptor in complex with Gq
Descriptor: 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE, Engineered G-alpha-q, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Wang, Y, Zhuang, Y, Xu, P, Xu, H.E, Jiang, Y.
Deposit date:2021-07-05
Release date:2021-08-18
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Molecular recognition of an acyl-peptide hormone and activation of ghrelin receptor.
Nat Commun, 12, 2021
6IDY
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BU of 6idy by Molmil
Crystal structure of Aspergillus fumigatus lipase B
Descriptor: CALCIUM ION, SULFATE ION, lipase aflb
Authors:Wang, Y.H, Lan, D.M.
Deposit date:2018-09-12
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of Aspergillus fumigatus lipase B
To Be Published
2IVH
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BU of 2ivh by Molmil
Crystal structure of the nuclease domain of ColE7 (H545Q mutant) in complex with an 18-bp duplex DNA
Descriptor: 5'-D(*GP*GP*AP*AP*TP*TP*CP*GP*AP*TP *CP*GP*AP*AP*TP*TP*CP*C)-3', COLCIN-E7, ZINC ION
Authors:Wang, Y.T, Yang, W.J, Li, C.L, Doudeva, L.G, Yuan, H.S.
Deposit date:2006-06-13
Release date:2007-01-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for Sequence-Dependent DNA Cleavage by Nonspecific Endonucleases.
Nucleic Acids Res., 35, 2007
7CB7
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BU of 7cb7 by Molmil
1.7A resolution structure of SARS-CoV-2 main protease (Mpro) in complex with broad-spectrum coronavirus protease inhibitor GC376
Descriptor: (1R,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-like proteinase, ...
Authors:Wang, Y.C, Yang, C.S, Hou, M.H, Tsai, C.L, Chou, Y.Z, Chen, Y, Hung, M.C.
Deposit date:2020-06-10
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Structural basis of SARS-CoV-2 main protease inhibition by a broad-spectrum anti-coronaviral drug.
Am J Cancer Res, 10, 2020
2K48
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BU of 2k48 by Molmil
NMR Structure of the N-terminal Coiled Coil Domain of the Andes Hantavirus Nucleocapsid Protein
Descriptor: Nucleoprotein
Authors:Wang, Y, Boudreaux, D.M, Estrada, D.F, Egan, C.W, St Jeor, S.C, De Guzman, R.N.
Deposit date:2008-05-30
Release date:2008-08-05
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR Structure of the N-terminal Coiled Coil Domain of the Andes Hantavirus Nucleocapsid Protein.
J.Biol.Chem., 283, 2008
2IVK
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BU of 2ivk by Molmil
Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNA
Descriptor: 5'-D(*AP*AP*TP*TP*CP*GP*AP*TP*CP*GP *AP*AP*TP*TP*C)-3', 5'-D(*GP*AP*AP*TP*TP*CP*GP*AP*TP*CP *GP*AP*AP*TP*T)-3', 5'-D(*GP*AP*AP*TP*TP*CP*GP*AP*TP*CP *GP*AP*AP*TP*TP*C)-3', ...
Authors:Wang, Y.T, Yang, W.J, Li, C.L, Doudeva, L.G, Yuan, H.S.
Deposit date:2006-06-14
Release date:2007-01-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Basis for Sequence-Dependent DNA Cleavage by Nonspecific Endonucleases.
Nucleic Acids Res., 35, 2007
7WQB
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BU of 7wqb by Molmil
SARS-CoV-2 main protease mutant (P168A) in complex with MG-132
Descriptor: 3C-like proteinase nsp5, MAGNESIUM ION, N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-1-hydroxy-4-methylpentan-2-yl]-L-leucinamide
Authors:Wang, Y.C, Yang, C.S, Hou, M.H, Tsai, C.L, Chen, Y.
Deposit date:2022-01-25
Release date:2023-08-02
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:SARS-CoV-2 main protease mutant (P168A) in complex with MG-132
To Be Published
2HI5
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BU of 2hi5 by Molmil
Model for bacteriophage fd from cryo-EM
Descriptor: Coat protein B
Authors:Wang, Y.A, Yu, X, Overman, S, Tsuboi, M, Thomas, G.J, Egelman, E.H.
Deposit date:2006-06-29
Release date:2007-08-07
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (8 Å)
Cite:The Structure of a Filamentous Bacteriophage
J.Mol.Biol., 361, 2006
2IMI
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BU of 2imi by Molmil
Structures of an Insect Epsilon-class Glutathione S-transferase from the Malaria Vector Anopheles Gambiae: Evidence for High DDT-detoxifying Activity
Descriptor: Epsilon-class Glutathione S-transferase, GLUTATHIONE
Authors:Wang, Y, Hemingway, J, Ranson, H, Meehan, E.J, Chen, L.
Deposit date:2006-10-02
Release date:2007-10-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of an insect epsilon class glutathione S-transferase from the malaria vector Anopheles gambiae provides an explanation for the high DDT-detoxifying activity
J.Struct.Biol., 164, 2008
2IL3
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BU of 2il3 by Molmil
Structures of an Insect Epsilon-class Glutathione S-transferase from the Malaria Vector Anopheles Gambiae: Evidence for High DDT-detoxifying Activity
Descriptor: Epsilon-class Glutathione S-transferase
Authors:Wang, Y, Hemingway, J, Ranson, H, Meehan, E.J, Chen, L.
Deposit date:2006-10-02
Release date:2007-10-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of an insect epsilon class glutathione S-transferase from the malaria vector Anopheles gambiae provides an explanation for the high DDT-detoxifying activity
J.Struct.Biol., 164, 2008
2IMK
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BU of 2imk by Molmil
Structures of an Insect Epsilon-class Glutathione S-transferase from the Malaria Vector Anopheles Gambiae: Evidence for High DDT-detoxifying Activity
Descriptor: Epsilon-class Glutathione S-transferase, S-HEXYLGLUTATHIONE
Authors:Wang, Y, Hemingway, J, Ranson, H, Meehan, E.J, Chen, L.
Deposit date:2006-10-02
Release date:2007-10-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of an insect epsilon class glutathione S-transferase from the malaria vector Anopheles gambiae provides an explanation for the high DDT-detoxifying activity
J.Struct.Biol., 164, 2008
2I0G
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BU of 2i0g by Molmil
Benzopyrans are Selective Estrogen Receptor beta Agonists (SERBAs) with Novel Activity in Models of Benign Prostatic Hyperplasia
Descriptor: (3AS,4R,9BR)-4-(4-HYDROXYPHENYL)-1,2,3,3A,4,9B-HEXAHYDROCYCLOPENTA[C]CHROMEN-8-OL, Estrogen receptor beta
Authors:Wang, Y.
Deposit date:2006-08-10
Release date:2006-10-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Benzopyrans are selective estrogen receptor Beta agonists with novel activity in models of benign prostatic hyperplasia.
J.Med.Chem., 49, 2006
2KKT
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BU of 2kkt by Molmil
Solution structure of the SCA7 domain of human Ataxin-7-L3 protein
Descriptor: Ataxin-7-like protein 3, ZINC ION
Authors:Wang, Y, Atkinson, A.R, Bonnet, J, Romier, C, Kieffer, B.
Deposit date:2009-06-29
Release date:2010-06-16
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Histone deubiquitination by SAGA is modulated by an atypical zinc finger domain of Ataxin-7
To be Published
2GL9
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BU of 2gl9 by Molmil
Crystal Structure of Glycosylasparaginase-Substrate Complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ASPARAGINE, Glycosylasparaginase alpha chain, ...
Authors:Wang, Y, Guo, H.C.
Deposit date:2006-04-04
Release date:2007-02-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic snapshot of a productive glycosylasparaginase-substrate complex.
J.Mol.Biol., 366, 2007
2H52
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BU of 2h52 by Molmil
Crystal structure of human bisphosphoglycerate mutase complex with 3-phosphoglycerate (18 days)
Descriptor: 3-PHOSPHOGLYCERIC ACID, Bisphosphoglycerate mutase, CYCLOHEXYLAMMONIUM ION
Authors:Wang, Y, Gong, W.
Deposit date:2006-05-25
Release date:2006-10-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Seeing the process of histidine phosphorylation in human bisphosphoglycerate mutase
To be Published
2I0J
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BU of 2i0j by Molmil
Benzopyrans are Selective Estrogen Receptor beta Agonists (SERBAs) with Novel Activity in Models of Benign Prostatic Hyperplasia
Descriptor: (3AS,4R,9BR)-4-(4-HYDROXYPHENYL)-1,2,3,3A,4,9B-HEXAHYDROCYCLOPENTA[C]CHROMEN-8-OL, Estrogen receptor alpha
Authors:Wang, Y.
Deposit date:2006-08-10
Release date:2006-10-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Benzopyrans are selective estrogen receptor Beta agonists with novel activity in models of benign prostatic hyperplasia.
J.Med.Chem., 49, 2006
7CPO
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BU of 7cpo by Molmil
Crystal Structure of Anolis carolinensis MHC I complex
Descriptor: HIS-VAL-TYR-GLY-PRO-LEU-LYS-PRO-ILE, MHC CLASS I ANTIGEN, beta2-microglobulin
Authors:Wang, Y, Qu, Z, Ma, L, Wei, X, Zhang, N, Xia, C.
Deposit date:2020-08-07
Release date:2021-01-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Crystal Structure of the MHC Class I (MHC-I) Molecule in the Green Anole Lizard Demonstrates the Unique MHC-I System in Reptiles.
J Immunol., 206, 2021
7WQA
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BU of 7wqa by Molmil
SARS-CoV-2 main protease in complex with Z-VAD-FMK
Descriptor: 3C-like proteinase, Z-VAD(OMe)-FMK
Authors:Wang, Y.C, Yang, C.S, Hou, M.H, Tsai, C.L, Chen, Y.
Deposit date:2022-01-25
Release date:2023-03-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:SARS-CoV-2 main protease in complex with Z-VAD-FMK
To Be Published

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