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PDB: 12929 results

1KM6
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BU of 1km6 by Molmil
Crystal structure of ODCase mutant D70AK72A complexed with OMP
Descriptor: OROTIDINE 5'-PHOSPHATE DECARBOXYLASE, OROTIDINE-5'-MONOPHOSPHATE
Authors:Wu, N, Gillon, W, Pai, E.F.
Deposit date:2001-12-13
Release date:2002-06-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mapping the active site-ligand interactions of orotidine 5'-monophosphate decarboxylase by crystallography.
Biochemistry, 41, 2002
5IJ5
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BU of 5ij5 by Molmil
Crystal structure of Equine Serum Albumin in the presence of 50 mM zinc at pH 4.5
Descriptor: GLYCEROL, Serum albumin, ZINC ION
Authors:Handing, K.B, Majorek, K.A, Shabalin, I.G, Cymborowski, M.T, Zheng, H, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2016-03-01
Release date:2016-03-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Circulatory zinc transport is controlled by distinct interdomain sites on mammalian albumins.
Chem Sci, 7, 2016
1RT9
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BU of 1rt9 by Molmil
Structure of human purine nucleoside phosphorylase in complex with Immucillin-H and sulfate
Descriptor: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, Purine nucleoside phosphorylase, SULFATE ION
Authors:Shi, W, Lewandowicz, A, Tyler, P.C, Furneaux, R.H, Almo, S.C, Schramm, V.L.
Deposit date:2003-12-10
Release date:2005-02-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural comparison of human and malarial purine nucleoside phosphorylases
To be Published
6ET1
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BU of 6et1 by Molmil
Crystal structure of PqsBC from Pseudomonas aeruginosa (crystal form 2)
Descriptor: PqsB, PqsC
Authors:Witzgall, F, Blankenfeldt, W.
Deposit date:2017-10-25
Release date:2018-07-04
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:The Alkylquinolone Repertoire of Pseudomonas aeruginosa is Linked to Structural Flexibility of the FabH-like 2-Heptyl-3-hydroxy-4(1H)-quinolone (PQS) Biosynthesis Enzyme PqsBC.
Chembiochem, 19, 2018
2FV0
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BU of 2fv0 by Molmil
UGL_D88N/dGlcA-Glc-Rha-Glc
Descriptor: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-4)-beta-D-glucopyranose-(1-4)-alpha-L-rhamnopyranose-(1-3)-beta-D-glucopyranose, Unsaturated glucuronyl hydrolase
Authors:Itoh, T, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2006-01-28
Release date:2006-05-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
6EU9
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BU of 6eu9 by Molmil
Crystal structure of Platynereis dumerilii RAR ligand-binding domain in complex with all-trans retinoic acid
Descriptor: RETINOIC ACID, Retinoic acid receptor
Authors:Handberg-Thorsager, M, Gutierrez-Mazariegos, J, Arold, S.T, Nadendla, E.K, Bertucci, P.Y, Germain, P, Tomancak, P, Pierzchalski, K, Jones, J.W, Albalat, R, Kane, M.A, Bourguet, W, Laudet, V, Arendt, D, Schubert, M.
Deposit date:2017-10-29
Release date:2018-03-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:The ancestral retinoic acid receptor was a low-affinity sensor triggering neuronal differentiation.
Sci Adv, 4, 2018
3I99
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BU of 3i99 by Molmil
The crystal structure of the UDP-N-acetylenolpyruvoylglucosamine reductase from the Vibrio cholerae O1 biovar Tor
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, UDP-N-acetylenolpyruvoylglucosamine reductase
Authors:Zhang, R, Gu, M, Peterson, S, Anderson, W, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-07-10
Release date:2009-10-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of the UDP-N-acetylenolpyruvoylglucosamine reductase from the Vibrio cholerae O1 biovar Tor
To be Published
1KV6
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BU of 1kv6 by Molmil
X-ray structure of the orphan nuclear receptor ERR3 ligand-binding domain in the constitutively active conformation
Descriptor: ESTROGEN-RELATED RECEPTOR GAMMA, steroid receptor coactivator 1
Authors:Greschik, H, Wurtz, J.-M, Sanglier, S, Bourguet, W, van Dorsselaer, A, Moras, D, Renaud, J.-P, Structural Proteomics in Europe (SPINE)
Deposit date:2002-01-25
Release date:2003-01-25
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and Functional Evidence for Ligand-Independent Transcriptional Activation by the Estrogen-Related Receptor 3
Mol.Cell, 9, 2002
7BZF
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BU of 7bzf by Molmil
COVID-19 RNA-dependent RNA polymerase post-translocated catalytic complex
Descriptor: Non-structural protein 7, Non-structural protein 8, RNA (31-MER), ...
Authors:Wang, Q, Gao, Y, Ji, W, Mu, A, Rao, Z.
Deposit date:2020-04-27
Release date:2020-06-03
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structural Basis for RNA Replication by the SARS-CoV-2 Polymerase.
Cell, 182, 2020
1ROE
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BU of 1roe by Molmil
NMR STUDY OF 2FE-2S FERREDOXIN OF SYNECHOCOCCUS ELONGATUS
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FERREDOXIN
Authors:Roesch, P, Baumann, B, Sticht, H, Sutter, M, Haehnel, W.
Deposit date:1995-11-24
Release date:1996-06-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of Synechococcus elongatus [Fe2S2] ferredoxin in solution.
Biochemistry, 35, 1996
6EYS
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BU of 6eys by Molmil
Crystal structure of the periplasmic pyoverdine maturation protein PvdP
Descriptor: PvdP
Authors:Poppe, J, Blankenfeldt, W.
Deposit date:2017-11-13
Release date:2018-08-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.091 Å)
Cite:Pseudomonas aeruginosapyoverdine maturation enzyme PvdP has a noncanonical domain architecture and affords insight into a new subclass of tyrosinases.
J. Biol. Chem., 293, 2018
3ILF
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BU of 3ilf by Molmil
Crystal structure of porphyranase A (PorA) in complex with neo-porphyrotetraose
Descriptor: 6-O-sulfo-alpha-L-galactopyranose-(1-3)-beta-D-galactopyranose-(1-4)-6-O-sulfo-alpha-L-galactopyranose-(1-3)-alpha-D-galactopyranose, ACETATE ION, CALCIUM ION, ...
Authors:Hehemann, J.H, Correc, G, Barbeyron, T, Helbert, W, Michel, G, Czjzek, M.
Deposit date:2009-08-07
Release date:2010-04-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota.
Nature, 464, 2010
5GSX
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Mouse MHC class I H-2Kd with a MERS-CoV-derived peptide 142-2
Descriptor: 10-mer peptide from Spike protein, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ...
Authors:Liu, K, Chai, Y, Qi, J, Tan, W, Liu, W.J, Gao, G.F.
Deposit date:2016-08-17
Release date:2017-06-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Protective T Cell Responses Featured by Concordant Recognition of Middle East Respiratory Syndrome Coronavirus-Derived CD8+ T Cell Epitopes and Host MHC.
J. Immunol., 198, 2017
6JY7
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BU of 6jy7 by Molmil
Structure of light-state marine bacterial chloride importer, NM-R3, with Pulse laser (ND-1%) at 95K.
Descriptor: CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ...
Authors:Yun, J.H, Ohki, M, Park, S.Y, Lee, W.
Deposit date:2019-04-26
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Pumping mechanism of NM-R3, a light-driven bacterial chloride importer in the rhodopsin family.
Sci Adv, 6, 2020
1KG1
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BU of 1kg1 by Molmil
NMR structure of the NIP1 elicitor protein from Rhynchosporium secalis
Descriptor: Necrosis Inducing Protein 1
Authors:Van't Slot, K.A, Van den Burg, H.A, Kloks, C.P, Hilbers, C.W, Knogge, W, Papavoine, C.H.
Deposit date:2001-11-26
Release date:2003-11-11
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution Structure of the Plant Disease Resistance-triggering Protein NIP1 from the Fungus Rhynchosporium secalis Shows a Novel beta-Sheet Fold.
J.Biol.Chem., 278, 2003
5H1M
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BU of 5h1m by Molmil
Crystal structure of WD40 repeat domains of Gemin5 in complex with M7G
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, Gem-associated protein 5
Authors:Jin, W, Wang, Y, Liu, C.P, Yang, N, Jin, M, Cong, Y, Wang, M, Xu, R.M.
Deposit date:2016-10-10
Release date:2016-11-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.492 Å)
Cite:Structural basis for snRNA recognition by the double-WD40 repeat domain of Gemin5
Genes Dev., 30, 2016
6JYD
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BU of 6jyd by Molmil
Structure of light-state marine bacterial chloride importer, NM-R3, with CW laser (ND-30%) at 95K.
Descriptor: CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ...
Authors:Yun, J.H, Ohki, M, Park, S.Y, Lee, W.
Deposit date:2019-04-26
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.007 Å)
Cite:Pumping mechanism of NM-R3, a light-driven bacterial chloride importer in the rhodopsin family.
Sci Adv, 6, 2020
3N2A
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BU of 3n2a by Molmil
Crystal structure of bifunctional folylpolyglutamate synthase/dihydrofolate synthase from Yersinia pestis CO92
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Bifunctional folylpolyglutamate synthase/dihydrofolate synthase, ...
Authors:Nocek, B, Maltseva, N, Papazisi, L, Anderson, W, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-05-17
Release date:2010-06-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of bifunctional folylpolyglutamate synthase/dihydrofolate synthase from Yersinia pestis CO92
TO BE PUBLISHED
3NGN
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BU of 3ngn by Molmil
Crystal structure of the human CNOT6L nuclease domain in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, CCR4-NOT transcription complex subunit 6-like
Authors:Wang, H, Morita, M, Yang, W, Bartlam, M, Yamamoto, T, Rao, Z.
Deposit date:2010-06-12
Release date:2010-07-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the human CNOT6L nuclease domain reveals strict poly(A) substrate specificity.
Embo J., 2010
8ZJB
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BU of 8zjb by Molmil
Oomycete Nudix effectors display WY-Nudix conformations with mRNA decapping activity
Descriptor: Nudix hydrolase domain-containing protein
Authors:Xing, W, Xing, W.
Deposit date:2024-05-14
Release date:2024-07-03
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Oomycete Nudix effectors display WY-Nudix conformation and mRNA decapping activity.
J Integr Plant Biol, 2024
6ET2
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BU of 6et2 by Molmil
Crystal structure of PqsBC (C129A) mutant from Pseudomonas aeruginosa (crystal form 3)
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, PqsB, PqsC
Authors:Witzgall, F, Blankenfeldt, W.
Deposit date:2017-10-25
Release date:2018-07-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Alkylquinolone Repertoire of Pseudomonas aeruginosa is Linked to Structural Flexibility of the FabH-like 2-Heptyl-3-hydroxy-4(1H)-quinolone (PQS) Biosynthesis Enzyme PqsBC.
Chembiochem, 19, 2018
2G1E
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BU of 2g1e by Molmil
Solution Structure of TA0895
Descriptor: hypothetical protein Ta0895
Authors:Yeo, I.Y, Hong, E, Jung, J, Lee, W, Yee, A, Arrowsmith, C.H.
Deposit date:2006-02-14
Release date:2006-12-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of TA0895, a MoaD homologue from Thermoplasma acidophilum
Proteins, 65, 2006
6JY8
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Structure of dark-state marine bacterial chloride importer, NM-R3, with CW laser (ND-3%) at 95K.
Descriptor: CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ...
Authors:Yun, J.H, Ohki, M, Park, S.Y, Lee, W.
Deposit date:2019-04-26
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Pumping mechanism of NM-R3, a light-driven bacterial chloride importer in the rhodopsin family.
Sci Adv, 6, 2020
2G8K
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BU of 2g8k by Molmil
B. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site)
Descriptor: 5'-D(*AP*TP*GP*TP*CP*G)-3', 5'-R(*UP*CP*GP*AP*CP*A)-3', CALCIUM ION, ...
Authors:Nowotny, M, Yang, W.
Deposit date:2006-03-02
Release date:2006-04-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Stepwise analyses of metal ions in RNase H catalysis from substrate destabilization to product release.
Embo J., 25, 2006
5H1K
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Crystal structure of WD40 repeat domains of Gemin5 in complex with 13-nt U4 snRNA fragment
Descriptor: Gem-associated protein 5, U4 snRNA (5'-R(*GP*CP*AP*AP*UP*UP*UP*UP*UP*GP*AP*CP*A)-3')
Authors:Wang, Y, Jin, W, Liu, C.P, Yang, N, Jin, M, Cong, Y, Wang, M, Xu, R.M.
Deposit date:2016-10-10
Release date:2016-11-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for snRNA recognition by the double-WD40 repeat domain of Gemin5
Genes Dev., 30, 2016

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