Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12521 results

3UEH
DownloadVisualize
BU of 3ueh by Molmil
Crystal structure of human Survivin H80A mutant
Descriptor: 1,2-ETHANEDIOL, Baculoviral IAP repeat-containing protein 5, DI(HYDROXYETHYL)ETHER, ...
Authors:Niedzialkowska, E, Porebski, P.J, Wang, F, Higgins, J.M, Stukenberg, P.T, Minor, W.
Deposit date:2011-10-30
Release date:2012-03-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular basis for phosphospecific recognition of histone H3 tails by Survivin paralogues at inner centromeres.
Mol Biol Cell, 23, 2012
6BSI
DownloadVisualize
BU of 6bsi by Molmil
Structure of HIV-1 RT complexed with an RNA/DNA hybrid containing the polypurine-tract sequence
Descriptor: (-)-6-CHLORO-4-CYCLOPROPYLETHYNYL-4-TRIFLUOROMETHYL-1,4-DIHYDRO-2H-3,1-BENZOXAZIN-2-ONE, CALCIUM ION, DNA (5'-D(*GP*TP*TP*TP*TP*TP*CP*TP*TP*TP*TP*GP*TP*TP*AP*TP*TP*GP*TP*GP*GP*CP*C)-3'), ...
Authors:Tian, L, Kim, M, Yang, W.
Deposit date:2017-12-03
Release date:2018-01-03
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structure of HIV-1 reverse transcriptase cleaving RNA in an RNA/DNA hybrid.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1OH2
DownloadVisualize
BU of 1oh2 by Molmil
Sucrose-Specific Porin, with Bound Sucrose Molecules
Descriptor: CALCIUM ION, Sucrose porin, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Diederichs, K, Welte, W.
Deposit date:2003-05-21
Release date:2003-05-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Sucrose-Specific Porin, with Bound Sucrose Molecules
To be Published
3UU7
DownloadVisualize
BU of 3uu7 by Molmil
Crystal structure of hERa-LBD (Y537S) in complex with bisphenol-A
Descriptor: 4,4'-PROPANE-2,2-DIYLDIPHENOL, Estrogen receptor, Nuclear receptor coactivator 1
Authors:Delfosse, V, Grimaldi, M, Bourguet, W.
Deposit date:2011-11-28
Release date:2012-08-22
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.196 Å)
Cite:Structural and mechanistic insights into bisphenols action provide guidelines for risk assessment and discovery of bisphenol A substitutes.
Proc.Natl.Acad.Sci.USA, 109, 2012
3UUC
DownloadVisualize
BU of 3uuc by Molmil
Crystal structure of hERa-LBD (wt) in complex with bisphenol-C
Descriptor: 4,4'-(2,2-dichloroethene-1,1-diyl)diphenol, Estrogen receptor
Authors:Delfosse, V, Grimaldi, M, Bourguet, W.
Deposit date:2011-11-28
Release date:2012-08-22
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and mechanistic insights into bisphenols action provide guidelines for risk assessment and discovery of bisphenol A substitutes.
Proc.Natl.Acad.Sci.USA, 109, 2012
1Y3Q
DownloadVisualize
BU of 1y3q by Molmil
Structure of AlgQ1, alginate-binding protein
Descriptor: AlgQ1, CALCIUM ION
Authors:Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K.
Deposit date:2004-11-26
Release date:2005-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
3UXG
DownloadVisualize
BU of 3uxg by Molmil
Crystal structure of RFXANK
Descriptor: DNA-binding protein RFXANK, Histone deacetylase 4, UNKNOWN ATOM OR ION
Authors:Tempel, W, Chao, X, Bian, C, Li, Y, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2011-12-05
Release date:2012-06-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Sequence-Specific Recognition of a PxLPxI/L Motif by an Ankyrin Repeat Tumbler Lock.
Sci.Signal., 5, 2012
1Y6A
DownloadVisualize
BU of 1y6a by Molmil
Crystal structure of VEGFR2 in complex with a 2-anilino-5-aryl-oxazole inhibitor
Descriptor: N-[5-(ETHYLSULFONYL)-2-METHOXYPHENYL]-5-[3-(2-PYRIDINYL)PHENYL]-1,3-OXAZOL-2-AMINE, Vascular endothelial growth factor receptor 2
Authors:Harris, P.A, Cheung, M, Hunter, R.N, Brown, M.L, Veal, J.M, Nolte, R.T, Wang, L, Liu, W, Crosby, R.M, Johnson, J.H, Epperly, A.H, Kumar, R, Luttrell, D.K, Stafford, J.A.
Deposit date:2004-12-05
Release date:2005-06-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery and evaluation of 2-anilino-5-aryloxazoles as a novel class of VEGFR2 kinase inhibitors.
J.Med.Chem., 48, 2005
1JH7
DownloadVisualize
BU of 1jh7 by Molmil
Semi-reduced Inhibitor-bound Cyclic Nucleotide Phosphodiesterase from Arabidopsis thaliana
Descriptor: SULFATE ION, URIDINE-2',3'-VANADATE, cyclic phosphodiesterase
Authors:Hofmann, A, Grella, M, Botos, I, Filipowicz, W, Wlodawer, A.
Deposit date:2001-06-27
Release date:2002-02-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of the semireduced and inhibitor-bound forms of cyclic nucleotide phosphodiesterase from Arabidopsis thaliana.
J.Biol.Chem., 277, 2002
6BLP
DownloadVisualize
BU of 6blp by Molmil
Pol II elongation complex with an abasic lesion at i+1 position, soaking AMPCPP
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA (5'-D(P*AP*(3DR)P*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Wang, W, Wang, D.
Deposit date:2017-11-11
Release date:2018-02-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.203 Å)
Cite:Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1Y89
DownloadVisualize
BU of 1y89 by Molmil
Crystal Structure of devB protein
Descriptor: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, DI(HYDROXYETHYL)ETHER, NONAETHYLENE GLYCOL, ...
Authors:Lazarski, K, Cymborowski, M, Chruszcz, M, Zheng, H, Zhang, R, Lezondra, L, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-12-10
Release date:2005-01-25
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of devB protein
To be Published
1XI8
DownloadVisualize
BU of 1xi8 by Molmil
Molybdenum cofactor biosynthesis protein from Pyrococcus furiosus Pfu-1657500-001
Descriptor: Molybdenum cofactor biosynthesis protein
Authors:Zhou, W, Zhao, M, Chang, J.C, Liu, Z.-J, Chen, L, Horanyi, P, Xu, H, Yang, H, Habel, J.E, Lee, D, Chang, S.-H, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2004-09-21
Release date:2004-11-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.504 Å)
Cite:Molybdenum cofactor biosynthesis protein from Pyrococcus furiosus Pfu-1657500-001
To be published
1JEJ
DownloadVisualize
BU of 1jej by Molmil
T4 phage apo BGT
Descriptor: DNA BETA-GLUCOSYLTRANSFERASE
Authors:Morera, S, Lariviere, L, Kurzeck, J, Aschke-Sonnenborn, U, Freemont, P.S, Janin, J, Ruger, W.
Deposit date:2001-06-18
Release date:2001-08-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:High resolution crystal structures of T4 phage beta-glucosyltransferase: induced fit and effect of substrate and metal binding.
J.Mol.Biol., 311, 2001
6BR1
DownloadVisualize
BU of 6br1 by Molmil
Tubulin-RB3_SLD-TTL in complex with heterocyclic pyrimidine compound 4a
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-chloro-4-(6-methoxy-3,4-dihydroquinolin-1(2H)-yl)pyrido[2,3-d]pyrimidine, CALCIUM ION, ...
Authors:Kumar, G, Wang, Y, Li, W, White, S.W.
Deposit date:2017-11-29
Release date:2018-06-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Heterocyclic-Fused Pyrimidines as Novel Tubulin Polymerization Inhibitors Targeting the Colchicine Binding Site: Structural Basis and Antitumor Efficacy.
J. Med. Chem., 61, 2018
3ZQG
DownloadVisualize
BU of 3zqg by Molmil
Structure of Tetracycline repressor in complex with antiinducer peptide-TAP2
Descriptor: ANTI-INDUCER PEPTIDE TAP2, TETRACYCLINE REPRESSOR PROTEIN CLASS B FROM TRANSPOSON TN10, TETRACYCLINE REPRESSOR PROTEIN CLASS D
Authors:Sevvana, M, Goeke, D, Stoeckle, C, Kaspar, D, Grubmueller, S, Goetz, C, Wimmer, C, Berens, C, Klotzsche, M, Muller, Y.A, Hillen, W.
Deposit date:2011-06-09
Release date:2011-12-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:An Exclusive Alpha/Beta Code Directs Allostery in Tetr-Peptide Complexes.
J.Mol.Biol., 416, 2012
3ZWB
DownloadVisualize
BU of 3zwb by Molmil
CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1 (RPMFE1) COMPLEXED WITH 2TRANS-HEXENOYL-COA
Descriptor: (2E)-Hexenoyl-CoA, GLYCEROL, PEROXISOMAL BIFUNCTIONAL ENZYME, ...
Authors:Kasaragod, P, Schmitz, W, Hiltunen, J.K, Wierenga, R.K.
Deposit date:2011-07-28
Release date:2012-08-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The Isomerase and Hydratase Reaction Mechanism of the Crotonase Active Site of the Multifunctional Enzyme (Type-1), as Deduced from Structures of Complexes with 3S-Hydroxy- Acyl-Coa.
FEBS J., 280, 2013
1XH4
DownloadVisualize
BU of 1xh4 by Molmil
Crystal Structures of Protein Kinase B Selective Inhibitors in Complex with Protein Kinase A and Mutants
Descriptor: N-[4-({4-[5-(DIMETHYLAMINO)-2-HYDROXYBENZOYL]BENZOYL}AMINO)AZEPAN-3-YL]ISONICOTINAMIDE, cAMP-dependent protein kinase inhibitor, alpha form, ...
Authors:Breitenlechner, C.B, Friebe, W.-G, Brunet, E, Werner, G, Graul, K, Thomas, U, Kuenkele, K.-P, Schaefer, W, Gassel, M, Bossemeyer, D, Huber, R, Engh, R.A, Masjost, B.
Deposit date:2004-09-17
Release date:2005-09-17
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Design and crystal structures of protein kinase B-selective inhibitors in complex with protein kinase A and mutants
J.Med.Chem., 48, 2005
3ZOI
DownloadVisualize
BU of 3zoi by Molmil
ISOPENICILLIN N SYNTHASE WITH AC-O-METHYL-D-THREONINE
Descriptor: DELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-O-METHYL-D-THREONINE, FE (III) ION, GLYCEROL, ...
Authors:Rutledge, P.J, Clifton, I.J, Ge, W.
Deposit date:2013-02-21
Release date:2013-06-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The Crystal Structure of an Isopenicillin N Synthase Complex with an Ethereal Substrate Analogue Reveals Water in the Oxygen Binding Site.
FEBS Lett., 587, 2013
1XRR
DownloadVisualize
BU of 1xrr by Molmil
Crystal structure of active site F1-mutant E245Q soaked with peptide Pro-Pro
Descriptor: PROLINE, Proline iminopeptidase
Authors:Goettig, P, Brandstetter, H, Groll, M, Goehring, W, Konarev, P.V, Svergun, D.I, Huber, R, Kim, J.-S.
Deposit date:2004-10-15
Release date:2005-07-12
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:X-ray snapshots of peptide processing in mutants of tricorn-interacting factor F1 from Thermoplasma acidophilum
J.Biol.Chem., 280, 2005
6C8K
DownloadVisualize
BU of 6c8k by Molmil
RNA-activated 2-AIpG monomer complex, 30 min soaking
Descriptor: 2-amino-1-[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')
Authors:Zhang, W, Szostak, J.W.
Deposit date:2018-01-24
Release date:2018-05-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.259 Å)
Cite:Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
6C8O
DownloadVisualize
BU of 6c8o by Molmil
RNA-activated 2-AIpG monomer, 3h soaking
Descriptor: 5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')
Authors:Zhang, W, Szostak, J.W.
Deposit date:2018-01-25
Release date:2018-05-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
6BL1
DownloadVisualize
BU of 6bl1 by Molmil
Novel Modes of Inhibition of Wild-Type IDH1: Direct Covalent Modification of His315 with Cmpd13
Descriptor: (6aS,7S,9S,10aS)-7-methyl-8-oxo-10a-phenyl-2-(phenylamino)-5,6,6a,7,8,9,10,10a-octahydrobenzo[h]quinazoline-9-carbonitrile, CALCIUM ION, ISOCITRIC ACID, ...
Authors:Jakob, C.G, Qiu, W.
Deposit date:2017-11-09
Release date:2018-07-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Novel Modes of Inhibition of Wild-Type Isocitrate Dehydrogenase 1 (IDH1): Direct Covalent Modification of His315.
J. Med. Chem., 61, 2018
6BM4
DownloadVisualize
BU of 6bm4 by Molmil
Pol II elongation complex with an abasic lesion at i-1 position,soaking UMPNPP
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, DNA (5'-D(P*CP*AP*(3DR)P*CP*TP*CP*TP*TP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Wang, W, Wang, D.
Deposit date:2017-11-13
Release date:2018-02-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.951 Å)
Cite:Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BKZ
DownloadVisualize
BU of 6bkz by Molmil
Novel Modes of Inhibition of Wild-Type IDH1: Non-equivalent Allosteric Inhibition with Cmpd3
Descriptor: (7R)-1-[(4-fluorophenyl)methyl]-N-{3-[(1R)-1-hydroxyethyl]phenyl}-7-methyl-5-(1H-pyrrole-2-carbonyl)-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridine-3-carboxamide, Isocitrate dehydrogenase [NADP] cytoplasmic, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Jakob, C.G, Qiu, W.
Deposit date:2017-11-09
Release date:2018-07-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Novel Modes of Inhibition of Wild-Type Isocitrate Dehydrogenase 1 (IDH1): Direct Covalent Modification of His315.
J. Med. Chem., 61, 2018
3ZPX
DownloadVisualize
BU of 3zpx by Molmil
USTILAGO MAYDIS LIPASE UM03410, SHORT FORM WITHOUT FLAP
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, LIPASE, ...
Authors:Palm, G.J, Hinrichs, W.
Deposit date:2013-03-04
Release date:2014-03-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Lipase from Ustilago
To be Published

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon