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PDB: 34568 件

1PFO
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PERFRINGOLYSIN O
分子名称: PERFRINGOLYSIN O
著者Rossjohn, J, Parker, M.W.
登録日1997-07-31
公開日1998-08-05
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of a cholesterol-binding, thiol-activated cytolysin and a model of its membrane form.
Cell(Cambridge,Mass.), 89, 1997
6MKF
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Crystal structure of penicillin binding protein 5 (PBP5) from Enterococcus faecium in the imipenem-bound form
分子名称: (5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid, SULFATE ION, penicillin binding protein 5 (PBP5)
著者Moon, T.M, Lee, C, D'Andrea, E.D, Peti, W, Page, R.
登録日2018-09-25
公開日2018-10-31
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The structures of penicillin-binding protein 4 (PBP4) and PBP5 fromEnterococciprovide structural insights into beta-lactam resistance.
J. Biol. Chem., 293, 2018
6SPZ
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Crystal structure of PDZ1-2 from PSD-95 with peptide ligand sequence RRESEI bound to both domains
分子名称: ARG-ARG-GLU-SER-GLU-ILE, Disks large homolog 4, GLUTATHIONE
著者Rodzli, N, Levy, C.W, Prince, S.M.
登録日2019-09-03
公開日2019-10-02
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献The Dual PDZ Domain from Postsynaptic Density Protein 95 Forms a Scaffold with Peptide Ligand.
Biophys.J., 119, 2020
8G17
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CryoEM structure of wild-type GAPDH
分子名称: Glyceraldehyde-3-phosphate dehydrogenase
著者Choi, W.Y, Wu, H, Cheng, Y.F.
登録日2023-02-01
公開日2023-12-27
実験手法ELECTRON MICROSCOPY (1.98 Å)
主引用文献Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
8G16
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CryoEM structure of cytoplasmic GAPDH under 24h Oxidative Stress
分子名称: Glyceraldehyde-3-phosphate dehydrogenase
著者Choi, W.Y, Wu, H, Cheng, Y.F.
登録日2023-02-01
公開日2023-12-27
実験手法ELECTRON MICROSCOPY (2.07 Å)
主引用文献Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
8G13
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CryoEM structure of cytosolic GAPDH under 8h Oxidative Stress
分子名称: Glyceraldehyde-3-phosphate dehydrogenase
著者Choi, W.Y, Wu, H, Cheng, Y.F.
登録日2023-02-01
公開日2023-12-27
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
8G12
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CryoEM structure of nuclear GAPDH under 8h Oxidative Stress
分子名称: Glyceraldehyde-3-phosphate dehydrogenase
著者Choi, W.Y, Wu, H, Cheng, Y.F.
登録日2023-02-01
公開日2023-12-27
実験手法ELECTRON MICROSCOPY (2.17 Å)
主引用文献Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
8G15
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CryoEM structure of nuclear GAPDH under 24h Oxidative Stress
分子名称: Glyceraldehyde-3-phosphate dehydrogenase
著者Choi, W.Y, Wu, H, Cheng, Y.F.
登録日2023-02-01
公開日2023-12-27
実験手法ELECTRON MICROSCOPY (2.07 Å)
主引用文献Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
8G14
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CryoEM structure of cytosolic GAPDH under 8h Oxidative Stress, class2
分子名称: Glyceraldehyde-3-phosphate dehydrogenase
著者Choi, W.Y, Wu, H, Cheng, Y.F.
登録日2023-02-01
公開日2023-12-27
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
6AST
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BU of 6ast by Molmil
NMR and Restrained Molecular Dynamics Determination of the Structure of an Aza-Benzimidazole Derivative Complex with the DNA Minor Groove of an -AAGATA Sequence
分子名称: DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*TP*CP*TP*TP*GP*G)-3'), amino(4-{[(2-{4-[amino(iminio)methyl]phenyl}-3H-imidazo[4,5-b]pyridin-5-yl)oxy]methyl}phenyl)methaniminium
著者Harika, N.K, Germann, M.W, Wilson, W.D.
登録日2017-08-25
公開日2018-01-31
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献First Structure of a Designed Minor Groove Binding Heterocyclic Cation that Specifically Recognizes Mixed DNA Base Pair Sequences.
Chemistry, 23, 2017
1PER
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THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES
分子名称: DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3'), PROTEIN (434 REPRESSOR)
著者Rodgers, D.W, Harrison, S.C.
登録日1993-11-09
公開日1994-01-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The complex between phage 434 repressor DNA-binding domain and operator site OR3: structural differences between consensus and non-consensus half-sites.
Structure, 1, 1993
6MKH
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BU of 6mkh by Molmil
Crystal structure of pencillin binding protein 4 (PBP4) from Enterococcus faecalis in the imipenem-bound form
分子名称: (5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid, PHOSPHATE ION, pencillin binding protein 4 (PBP4)
著者D'Andrea, E.D, Moon, T.M, Peti, W, Page, R.
登録日2018-09-25
公開日2018-10-31
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献The structures of penicillin-binding protein 4 (PBP4) and PBP5 fromEnterococciprovide structural insights into beta-lactam resistance.
J. Biol. Chem., 293, 2018
1RGU
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BU of 1rgu by Molmil
The crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine, and tetranucleotide AGTG
分子名称: 4-(2S-AMINO-1-HYDROXYETHYL)PHENOL, 5'-D(*AP*GP*TP*G)-3', SPERMINE, ...
著者Davies, D.R, Interthal, H, Champoux, J.J, Hol, W.G.
登録日2003-11-13
公開日2004-03-02
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes.
J.Med.Chem., 47, 2004
8FEO
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16mer self-complementary duplex RNA with two separated native U:U pairs
分子名称: MAGNESIUM ION, RNA 16mer, STRONTIUM ION
著者Fang, Z, Szostak, J.W.
登録日2022-12-06
公開日2024-01-24
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
1NL9
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Potent, Selective Protein Tyrosine Phosphatase 1B Inhibitor Compound 12 Using a Linked-Fragment Strategy
分子名称: 2-{[4-(2-ACETYLAMINO-2-PENTYLCARBAMOYL-ETHYL)-NAPHTHALEN-1-YL]-OXALYL-AMINO}-BENZOIC ACID, Protein-tyrosine phosphatase, non-receptor type 1
著者Szczepankiewicz, B.G, Liu, G, Hajduk, P.J, Abad-Zapatero, C, Pei, Z, Xin, Z, Lubben, T, Trevillyan, J.M, Stashko, M.A, Ballaron, S.J, Liang, H, Huang, F, Hutchins, C.W, Fesik, S.W, Jirousek, M.R.
登録日2003-01-06
公開日2003-04-08
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Discovery of a Potent, Selective Protein Tyrosine Phosphatase 1B Inhibitor Using a Linked-Fragment Strategy
J.Am.Chem.Soc., 125, 2003
2VF3
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Aquifex aeolicus IspE in complex with ligand
分子名称: 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL KINASE, BROMIDE ION, CHLORIDE ION, ...
著者Alphey, M.S, Hunter, W.N.
登録日2007-10-30
公開日2008-11-25
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Inhibitors of the Kinase Ispe: Structure-Activity Relationships and Co-Crystal Structure Analysis.
Org.Biomol.Chem., 6, 2008
6SPV
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Crystal structure of PDZ1-2 from PSD-95
分子名称: Disks large homolog 4, GLUTATHIONE
著者Rodzli, N, Levy, C.W, Prince, S.M.
登録日2019-09-02
公開日2019-10-02
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献The Dual PDZ Domain from Postsynaptic Density Protein 95 Forms a Scaffold with Peptide Ligand.
Biophys.J., 119, 2020
8FER
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BU of 8fer by Molmil
16mer self-complementary duplex RNA with two continuous s(2)U:s(2)U pairs
分子名称: RNA 16mer with two continuous s(2)U
著者Fang, Z, Zhou, L, Szostak, J.W.
登録日2022-12-06
公開日2024-01-24
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.
J.Am.Chem.Soc., 146, 2024
6AYC
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Naegleria fowleri CYP51-itraconazole complex
分子名称: 2-[(2R)-butan-2-yl]-4-{4-[4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazin-1-yl]phenyl}-2,4-dihydro-3H-1,2,4-triazol-3-one, PROTOPORPHYRIN IX CONTAINING FE, Protein CYP51
著者Debnath, A, Calvet, C.M, Jennings, G, Zhou, W, Aksenov, A, Luth, M, Abagyan, R, Nes, W.D, McKerrow, J.H, Podust, L.M.
登録日2017-09-08
公開日2017-11-22
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献CYP51 is an essential drug target for the treatment of primary amoebic meningoencephalitis (PAM).
PLoS Negl Trop Dis, 11, 2017
2V2Q
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IspE in complex with ligand
分子名称: 4-AMINO-1-(5-{[3-(1H-BENZIMIDAZOL-2-YL)PROPANOYL]AMINO}-5-DEOXY-ALPHA-L-LYXOFURANOSYL)PYRIMIDIN-2(1H)-ONE, 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE, BROMIDE ION, ...
著者Alphey, M.S, Hunter, W.N.
登録日2007-06-06
公開日2007-06-19
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Synthesis and Characterization of Cytidine Derivatives that Inhibit the Kinase Ispe of the Non-Mevalonate Pathway for Isoprenoid Biosynthesis.
Chemmedchem, 3, 2008
6HG0
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Influenza A Virus N9 Neuraminidase complex with NANA (Tern/Australia).
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GLYCEROL, ...
著者Salinger, M.T, Hobbs, J.R, Murray, J.W, Laver, W.G, Kuhn, P, Garman, E.F.
登録日2018-08-22
公開日2018-08-29
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献High Resolution Structures of Viral Neuraminidase with Drugs Bound in the Active Site. (In preparation)
To Be Published
3WEK
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BU of 3wek by Molmil
Crystal structure of the human squalene synthase F288L mutant in complex with presqualene pyrophosphate
分子名称: MAGNESIUM ION, Squalene synthase, {(1R,2R,3R)-2-[(3E)-4,8-dimethylnona-3,7-dien-1-yl]-2-methyl-3-[(1E,5E)-2,6,10-trimethylundeca-1,5,9-trien-1-yl]cyclopropyl}methyl trihydrogen diphosphate
著者Liu, C.I, Jeng, W.Y, Wang, A.H.J.
登録日2013-07-07
公開日2014-02-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural insights into the catalytic mechanism of human squalene synthase.
Acta Crystallogr.,Sect.D, 70, 2014
6B0A
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Crystal structure of Pfs25 in complex with the transmission blocking antibody 1269
分子名称: 1269 antibody, heavy chain, light chain, ...
著者Scally, S.W, McLeod, B, Bosch, A, King, C.R, Julien, J.P.
登録日2017-09-14
公開日2017-11-15
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Molecular definition of multiple sites of antibody inhibition of malaria transmission-blocking vaccine antigen Pfs25.
Nat Commun, 8, 2017
2VN9
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Crystal Structure of Human Calcium Calmodulin dependent Protein Kinase II delta isoform 1, CAMKD
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II DELTA CHAIN, CHLORIDE ION, ...
著者Roos, A.K, Rellos, P, Salah, E, Pike, A.C.W, Fedorov, O, Pilka, E.S, von Delft, F, Arrowsmith, C.H, Weigelt, J, Edwards, A, Bountra, C, Knapp, S.
登録日2008-01-31
公開日2008-02-26
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the Camkiidelta/Calmodulin Complex Reveals the Molecular Mechanism of Camkii Kinase Activation.
Plos Biol., 8, 2010
1RG1
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Crystal structure of human Tyrosyl-DNA Phosphodiesterase complexed with vanadate, octopamine, and tetranucleotide AGTT
分子名称: 4-(2S-AMINO-1-HYDROXYETHYL)PHENOL, 5'-D(*AP*GP*TP*T)-3', SPERMINE, ...
著者Davies, D.R, Interthal, H, Champoux, J.J, Hol, W.G.
登録日2003-11-10
公開日2004-03-02
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Explorations of peptide and oligonucleotide binding sites of tyrosyl-DNA phosphodiesterase using vanadate complexes.
J.Med.Chem., 47, 2004

224004

件を2024-08-21に公開中

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