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PDB: 34568 results

8CW2
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BU of 8cw2 by Molmil
Crystal structure of TDP1 complexed with compound XZ760
Descriptor: 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 4-({(4R)-7-phenyl-2-[4-(2-{[4-(pyridin-2-yl)phenyl]methoxy}ethyl)phenyl]imidazo[1,2-a]pyridin-3-yl}amino)benzene-1,2-dicarboxylic acid, ...
Authors:Lountos, G.T, Zhao, X.Z, Wang, W, Kiselev, E, Tropea, J.E, Needle, D, Pommier, Y, Burke, T.R.
Deposit date:2022-05-18
Release date:2023-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.811 Å)
Cite:Identification of multidentate tyrosyl-DNA phosphodiesterase 1 (TDP1) inhibitors that simultaneously access the DNA, protein and catalytic-binding sites by oxime diversification.
Rsc Chem Biol, 4, 2023
4QA1
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BU of 4qa1 by Molmil
Crystal structure of A188T HDAC8 in complex with M344
Descriptor: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide, GLYCEROL, Histone deacetylase 8, ...
Authors:Decroos, C, Bowman, C.B, Moser, J.-A.S, Christianson, K.E, Deardorff, M.A, Christianson, D.W.
Deposit date:2014-05-02
Release date:2014-08-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Compromised Structure and Function of HDAC8 Mutants Identified in Cornelia de Lange Syndrome Spectrum Disorders.
Acs Chem.Biol., 9, 2014
8CVQ
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BU of 8cvq by Molmil
Crystal structure of TDP1 complexed with compound XZ761
Descriptor: 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 4-{[(4S)-2,7-diphenylimidazo[1,2-a]pyridin-3-yl]amino}benzene-1,2-dicarboxylic acid, ...
Authors:Lountos, G.T, Zhao, X.Z, Wang, W, Kiselev, E, Tropea, J.E, Needle, D, Pommier, Y, Burke, T.R.
Deposit date:2022-05-18
Release date:2023-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Identification of multidentate tyrosyl-DNA phosphodiesterase 1 (TDP1) inhibitors that simultaneously access the DNA, protein and catalytic-binding sites by oxime diversification.
Rsc Chem Biol, 4, 2023
2MCZ
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BU of 2mcz by Molmil
CR1 Sushi domains 1 and 2
Descriptor: Complement receptor type 1
Authors:Park, H.J, Guariento, M.J, Maciejewski, M, Hauart, R, Tham, W, Cowman, A.F, Schmidt, C.Q, Martens, H, Liszewski, K.M, Hourcade, D, Barlow, P.N, Atkinson, J.P.
Deposit date:2013-08-27
Release date:2013-11-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Using Mutagenesis and Structural Biology to Map the Binding Site for the Plasmodium falciparum Merozoite Protein PfRh4 on the Human Immune Adherence Receptor.
J.Biol.Chem., 289, 2014
6XZT
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BU of 6xzt by Molmil
Crystal structure of helicase Pif1 from Thermus oshimai mutant G110C-E410C
Descriptor: PIF1 helicase
Authors:Dai, Y.X, Chen, W.F, Teng, F.Y, Liu, N.N, Hou, X.M, Dou, S.X, Rety, S, Xi, X.G.
Deposit date:2020-02-05
Release date:2021-02-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.341 Å)
Cite:Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition.
Nucleic Acids Res., 49, 2021
8HZ8
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BU of 8hz8 by Molmil
Structure of PPIA in complex with the peptide of NRF2
Descriptor: NRF2 peptide, Peptidyl-prolyl cis-trans isomerase A, N-terminally processed
Authors:Wanyan, W, Hui, M, Jin, H, Lu, W.
Deposit date:2023-01-08
Release date:2024-03-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structure of PPIA in complex with the peptide of NRF2
To Be Published
4QF6
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BU of 4qf6 by Molmil
Structure of Aldehyde Dehydrogenase from Bacillus cereus, E194S mutant
Descriptor: Aldehyde dehydrogenase, SODIUM ION
Authors:Ngo, H.P.T, Hong, S.H, Oh, D.K, Kang, L.W.
Deposit date:2014-05-19
Release date:2015-05-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Kinetic Analysis for Cofactor-binding Residues in Mammalian-like Aldehyde Dehydrogenase from Bacillus cereus Involved in Oxidation and Reduction Activity for All-trans-retinal
To be Published
5XYV
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BU of 5xyv by Molmil
Crystal structure of drosophila melanogaster Rhino chromoshadow domain in complex with Deadlock N-terminal domain
Descriptor: Protein deadlock, RHINO
Authors:Yu, B.W, Huang, Y.
Deposit date:2017-07-10
Release date:2018-06-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insights into Rhino-Deadlock complex for germline piRNA cluster specification
EMBO Rep., 19, 2018
5XZJ
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BU of 5xzj by Molmil
Crystal structure of the Zn-directed tetramer of the engineered cyt cb562 variant, C96T/AB5
Descriptor: CHLORIDE ION, HEME C, Soluble cytochrome b562, ...
Authors:Song, W.J, Tezcan, F.A.
Deposit date:2017-07-12
Release date:2017-12-20
Last modified:2022-03-23
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Importance of Scaffold Flexibility/Rigidity in the Design and Directed Evolution of Artificial Metallo-beta-lactamases.
J. Am. Chem. Soc., 139, 2017
2LY0
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BU of 2ly0 by Molmil
Solution NMR structure of the influenza A virus S31N mutant (19-49) in presence of drug M2WJ332
Descriptor: (3S,5S,7S)-N-{[5-(thiophen-2-yl)-1,2-oxazol-3-yl]methyl}tricyclo[3.3.1.1~3,7~]decan-1-aminium, Membrane ion channel M2
Authors:Wu, Y, Wang, J, DeGrado, W.
Deposit date:2012-09-10
Release date:2013-01-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and inhibition of the drug-resistant S31N mutant of the M2 ion channel of influenza A virus.
Proc.Natl.Acad.Sci.USA, 110, 2013
7NQD
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BU of 7nqd by Molmil
Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137
Descriptor: TPR_REGION domain-containing protein
Authors:Li, A.W.H, Doherty, A.J.
Deposit date:2021-03-01
Release date:2022-05-04
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Molecular basis for the initiation of DNA primer synthesis.
Nature, 605, 2022
7NQF
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BU of 7nqf by Molmil
Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137 with dsDNA
Descriptor: COBALT (II) ION, DNA(CGTGDG), TPR_REGION domain-containing protein
Authors:Li, A.W.H, Doherty, A.J.
Deposit date:2021-03-01
Release date:2022-05-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Molecular basis for the initiation of DNA primer synthesis.
Nature, 605, 2022
3RJW
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BU of 3rjw by Molmil
Crystal structure of histone lysine methyltransferase g9a with an inhibitor
Descriptor: 2-cyclohexyl-6-methoxy-N-[1-(1-methylethyl)piperidin-4-yl]-7-(3-pyrrolidin-1-ylpropoxy)quinazolin-4-amine, Histone-lysine N-methyltransferase EHMT2, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Dong, A, Wasney, G.A, Tempel, W, Liu, F, Barsyte, D, Allali-Hassani, A, Chen, X, Chau, I, Hajian, T, Senisterra, G, Chavda, N, Arora, K, Siarheyeva, A, Kireev, D.B, Herold, J.M, Bochkarev, A, Bountra, C, Weigelt, J, Edwards, A.M, Frye, S.V, Arrowsmith, C.H, Brown, P.J, Jin, J, Vedadi, M, Structural Genomics Consortium (SGC)
Deposit date:2011-04-15
Release date:2011-05-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:A chemical probe selectively inhibits G9a and GLP methyltransferase activity in cells.
Nat.Chem.Biol., 7, 2011
6YAR
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BU of 6yar by Molmil
Crystal structure of a Selenium-derivatized complex of the bacterial cellulose secretion regulators BcsR and BcsQ, crystallized in the presence of AppCp
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Bacterial cellulose secretion regulator BcsQ, Bacterial cellulose secretion regulator BcsR, ...
Authors:Caleechurn, M, Abidi, W, Zouhir, S, Roche, S, Krasteva, P.V.
Deposit date:2020-03-12
Release date:2021-02-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Architecture and regulation of an enterobacterial cellulose secretion system.
Sci Adv, 7, 2021
7OC3
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BU of 7oc3 by Molmil
Crystal structure of the third tudor domain of Qin
Descriptor: PHOSPHATE ION, Qin
Authors:Dhimole, N, Klug, W, Carlomagno, T.
Deposit date:2021-04-25
Release date:2022-05-04
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of the third tudor domain of Qin
To Be Published
6F36
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BU of 6f36 by Molmil
Polytomella Fo model
Descriptor: Mitochondrial ATP synthase subunit 6, Mitochondrial ATP synthase subunit ASA6, Mitochondrial ATP synthase subunit c
Authors:Yildiz, O, Kuehlbrandt, W, Klusch, N, Murphy, B.J, Mills, D.J.
Deposit date:2017-11-28
Release date:2017-12-20
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of proton translocation and force generation in mitochondrial ATP synthase.
Elife, 6, 2017
6YAY
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BU of 6yay by Molmil
Crystal structure of a Selenium-derivatized complex of the bacterial cellulose secretion regulators BcsR and BcsQ, crystallized in the presence of ADP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Bacterial cellulose secretion regulator BcsQ, Bacterial cellulose secretion regulator BcsR, ...
Authors:Abidi, W, Caleechurn, M, Zouhir, S, Roche, S, Krasteva, P.V.
Deposit date:2020-03-14
Release date:2021-02-24
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Architecture and regulation of an enterobacterial cellulose secretion system.
Sci Adv, 7, 2021
6YB3
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BU of 6yb3 by Molmil
Crystal structure of a native BcsRQ complex purified and crystallized in the absence of nucleotide
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Bacterial cellulose secretion regulator BcsQ, Bacterial cellulose secretion regulator BcsR, ...
Authors:Caleechurn, M, Abidi, W, Zouhir, S, Roche, S, Krasteva, P.V.
Deposit date:2020-03-15
Release date:2021-02-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Architecture and regulation of an enterobacterial cellulose secretion system.
Sci Adv, 7, 2021
6YB5
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BU of 6yb5 by Molmil
Orthorhombic crystal structure of a native BcsRQ complex crystallized in the presence of ADP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Bacterial cellulose secretion regulator BcsQ, Bacterial cellulose secretion regulator BcsR, ...
Authors:Caleechurn, M, Abidi, W, Zouhir, S, Roche, S, Krasteva, P.V.
Deposit date:2020-03-15
Release date:2021-02-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Architecture and regulation of an enterobacterial cellulose secretion system.
Sci Adv, 7, 2021
6YBB
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BU of 6ybb by Molmil
Crystal structure of a native BcsE (217-523) - BcsR-BcsQ (R156E mutant) complex with c-di-GMP and ATP bound
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), ADENOSINE-5'-TRIPHOSPHATE, Bacterial cellulose secretion regulator BcsE, ...
Authors:Abidi, W, Zouhir, S, Roche, S, Krasteva, P.V.
Deposit date:2020-03-16
Release date:2021-02-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Architecture and regulation of an enterobacterial cellulose secretion system.
Sci Adv, 7, 2021
7NQE
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BU of 7nqe by Molmil
Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137 with dGTP
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, ...
Authors:Li, A.W.H, Doherty, A.J.
Deposit date:2021-03-01
Release date:2022-05-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Molecular basis for the initiation of DNA primer synthesis.
Nature, 605, 2022
5YJD
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BU of 5yjd by Molmil
Structural insights into the CRISPR-Cas-associated ribonuclease activity of Staphylococcus epidermidis Csm3
Descriptor: CALCIUM ION, Csm3
Authors:Zhao, Y.Q, Gu, Y.J, Zhu, X.F, Cheng, W.
Deposit date:2017-10-10
Release date:2018-10-17
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structural insights into the CRISPR-Cas-associated ribonuclease activity of Staphylococcus epidermidis Csm3 and Csm6
To Be Published
2LZH
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BU of 2lzh by Molmil
THE STRUCTURES OF THE MONOCLINIC AND ORTHORHOMBIC FORMS OF HEN EGG-WHITE LYSOZYME AT 6 ANGSTROMS RESOLUTION.
Descriptor: HEN EGG WHITE LYSOZYME
Authors:Artymiuk, P.J, Blake, C.C.F, Rice, D.W, Wilson, K.S.
Deposit date:1981-06-29
Release date:1981-09-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (6 Å)
Cite:The Structures of the Monoclinic and Orthorhombic Forms of Hen Egg-White Lysozyme at 6 Angstroms Resolution.
Acta Crystallogr.,Sect.B, 38, 1982
2M5K
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BU of 2m5k by Molmil
Atomic-resolution structure of a doublet cross-beta amyloid fibril
Descriptor: Transthyretin
Authors:Fitzpatrick, A.W.P, Debelouchina, G.T, Bayro, M.J, Clare, D.K, Caporini, M.A, Bajaj, V.S, Jaroniec, C.P, Wang, L, Ladizhansky, V, Muller, S, MacPhee, C.E, Waudby, C.A, Mott, H.R, de Simone, A, Knowles, T.P.J, Saibil, H.R, Vendruscolo, M, Orlova, E.V, Griffin, R.G, Dobson, C.M.
Deposit date:2013-02-27
Release date:2013-12-04
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (12.7 Å), SOLID-STATE NMR
Cite:Atomic structure and hierarchical assembly of a cross-beta amyloid fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013
2M5M
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BU of 2m5m by Molmil
Atomic-resolution structure of a triplet cross-beta amyloid fibril
Descriptor: Transthyretin
Authors:Fitzpatrick, A.W.P, Debelouchina, G.T, Bayro, M.J, Clare, D.K, Caporini, M.A, Bajaj, V.S, Jaroniec, C.P, Wang, L, Ladizhansky, V, Muller, S, MacPhee, C.E, Waudby, C.A, Mott, H.R, de Simone, A, Knowles, T.P.J, Saibil, H.R, Vendruscolo, M, Orlova, E.V, Griffin, R.G, Dobson, C.M.
Deposit date:2013-02-27
Release date:2013-12-04
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (12.2 Å), SOLID-STATE NMR
Cite:Atomic structure and hierarchical assembly of a cross-beta amyloid fibril.
Proc.Natl.Acad.Sci.USA, 110, 2013

224004

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