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PDB: 28 results

1IH4
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Multi-Conformation Crystal Structure of GGm5CGCC
Descriptor: 5'-D(*GP*GP*(5CM)P*GP*CP*C)-3'
Authors:Vargason, J.M, Henderson, K, Ho, P.S.
Deposit date:2001-04-18
Release date:2001-06-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1IH6
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Multi-Conformation Crystal Structure of GGBr5CGCC
Descriptor: 5'-D(*GP*GP*(CBR)P*GP*CP*C)-3'
Authors:Vargason, J.M, Henderson, K, Ho, P.S.
Deposit date:2001-04-18
Release date:2001-06-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1IH1
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Crystal Structure of the B-DNA Hexamer GGCGCC with Cobalt Hexamine Resolved to 2.0 Angstroms
Descriptor: 5'-D(*GP*GP*CP*GP*CP*C)-3', COBALT HEXAMMINE(III), MAGNESIUM ION
Authors:Vargason, J.M, Henderson, K, Ho, P.S.
Deposit date:2001-04-18
Release date:2001-06-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1L6B
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BU of 1l6b by Molmil
CRYSTAL STRUCTURE ANALYSIS OF THE ALL DNA HOLLIDAY JUNCTION STRUCTURE OF CCGGTACM5CGG
Descriptor: 5'-D(*CP*CP*GP*GP*TP*AP*CP*(5CM)P*GP*G)-3', CALCIUM ION
Authors:Vargason, J.M, Ho, P.S.
Deposit date:2002-03-08
Release date:2002-08-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The effect of cytosine methylation on the structure and geometry of the Holliday junction: the structure of d(CCGGTACm5CGG) at 1.5 A resolution.
J.Biol.Chem., 277, 2002
1RPU
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Crystal Structure of CIRV p19 bound to siRNA
Descriptor: 19 kDa protein, 5'-R(P*CP*GP*UP*AP*CP*GP*CP*GP*UP*CP*AP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3'
Authors:Vargason, J.M, Szittya, G, Burgyan, J, Hall, T.M.T.
Deposit date:2003-12-03
Release date:2004-01-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Size selective recognition of siRNA by an RNA silencing suppressor
Cell(Cambridge,Mass.), 115, 2003
1IH3
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Multi-conformation crystal structure of GGm5CGm5CC
Descriptor: 5'-D(*GP*GP*(5CM)P*GP*(5CM)P*C)-3'
Authors:Vargason, J.M, Henderson, K, Ho, P.S.
Deposit date:2001-04-18
Release date:2001-06-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1F6C
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CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH SPERMINE
Descriptor: DNA (5'-D(*GP*GP*CP*GP*CP*C)-3'), SPERMINE
Authors:Vargason, J.M, Eichman, B.F, Ho, P.S.
Deposit date:2000-06-21
Release date:2000-08-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6E
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BU of 1f6e by Molmil
CRYSTAL STRUCTURE OF THE A-DNA HEXAMER GGCGM5CC
Descriptor: DNA (5'-D(*GP*GP*CP*GP*(5CM)P*C)-3')
Authors:Vargason, J.M, Eichman, B.F, Ho, P.S.
Deposit date:2000-06-21
Release date:2000-08-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1IH2
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Crystal Structure of GGBr5CGBr5CC
Descriptor: 5'-D(*GP*GP*(CBR)P*GP*(CBR)P*C)-3'
Authors:Vargason, J.M, Henderson, K, Ho, P.S.
Deposit date:2001-04-18
Release date:2001-06-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A crystallographic map of the transition from B-DNA to A-DNA.
Proc.Natl.Acad.Sci.USA, 98, 2001
1F6I
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BU of 1f6i by Molmil
CRYSTAL STRUCTURE OF THE E-DNA HEXAMER GGCGM5CC
Descriptor: DNA (5'-D(*GP*GP*CP*GP*(5CM)P*C)-3')
Authors:Vargason, J.M, Eichman, B.F, Ho, P.S.
Deposit date:2000-06-21
Release date:2000-08-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6J
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BU of 1f6j by Molmil
CRYSTAL STRUCTURE OF THE E-DNA HEXAMER GGCGBR5CC
Descriptor: DNA (5'-D(*GP*GP*CP*GP*(CBR)P*C)-3')
Authors:Vargason, J.M, Eichman, B.F, Ho, P.S.
Deposit date:2000-06-21
Release date:2000-08-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F69
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BU of 1f69 by Molmil
CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH COBALT HEXAMINE
Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*GP*GP*CP*GP*CP*C)-3'), MAGNESIUM ION
Authors:Vargason, J.M, Eichman, B.F, Ho, P.S.
Deposit date:2000-06-20
Release date:2000-08-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
6W7N
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BU of 6w7n by Molmil
30S-Inactive-low-Mg2+ Class A
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S12, ...
Authors:Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J.
Deposit date:2020-03-19
Release date:2020-10-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy.
Rna, 26, 2020
6W7W
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BU of 6w7w by Molmil
30S-Inactive-low-Mg2+ Class B
Descriptor: 16S rRNA, 30S ribosomal protein S12, 30S ribosomal protein S15, ...
Authors:Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J.
Deposit date:2020-03-19
Release date:2020-10-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy.
Rna, 26, 2020
6W6K
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BU of 6w6k by Molmil
30S-Activated-high-Mg2+
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J.
Deposit date:2020-03-17
Release date:2020-10-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy.
Rna, 26, 2020
6W7M
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BU of 6w7m by Molmil
30S-Inactive-high-Mg2+ + carbon layer
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J.
Deposit date:2020-03-19
Release date:2020-10-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy.
Rna, 26, 2020
6W77
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BU of 6w77 by Molmil
30S-Inactivated-high-Mg2+ Class A
Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J.
Deposit date:2020-03-18
Release date:2020-10-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy.
Rna, 26, 2020
6U0T
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BU of 6u0t by Molmil
Protofilament Ribbon Flagellar Proteins Rib43a-S
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ichikawa, M, Khalifa, A.A.Z, Vargas, J, Basu, K, Bui, K.H.
Deposit date:2019-08-14
Release date:2019-09-25
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.16 Å)
Cite:Tubulin lattice in cilia is in a stressed form regulated by microtubule inner proteins.
Proc.Natl.Acad.Sci.USA, 116, 2019
6U0U
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BU of 6u0u by Molmil
Protofilament Ribbon Flagellar Proteins Rib43a-L
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ichikawa, M, Khalifa, A.A.Z, Vargas, J, Basu, K, Bui, K.H.
Deposit date:2019-08-14
Release date:2019-09-25
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.16 Å)
Cite:Tubulin lattice in cilia is in a stressed form regulated by microtubule inner proteins.
Proc.Natl.Acad.Sci.USA, 116, 2019
6U0H
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BU of 6u0h by Molmil
Tubulin lattice of the ciliary doublet microtubule from Tetrahymena thermophila
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ichikawa, M, Khalifa, A.A.Z, Vargas, J, Basu, K, Bui, K.H.
Deposit date:2019-08-14
Release date:2019-09-25
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Tubulin lattice in cilia is in a stressed form regulated by microtubule inner proteins.
Proc.Natl.Acad.Sci.USA, 116, 2019
8SPK
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BU of 8spk by Molmil
Crystal structure of Antarctic PET-degrading enzyme
Descriptor: Lipase 1, MALONATE ION
Authors:Furtado, A.A, Blazquez-Sanchez, P, Grinen, A, Vargas, J.A, Leonardo, D.A, Sculaccio, S.A, Pereira, H.M, Diez, B, Garratt, R.C, Ramirez-Sarmiento, C.A.
Deposit date:2023-05-03
Release date:2023-08-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Engineering the catalytic activity of an Antarctic PET-degrading enzyme by loop exchange.
Protein Sci., 32, 2023
5TXG
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BU of 5txg by Molmil
Crystal structure of the Zika virus NS3 helicase.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, NS3 helicase, POTASSIUM ION
Authors:Nocadello, S, Light, S.H, Minasov, G, Shuvalova, L, Cardona-Correa, A.A, Ojeda, I, Vargas, J, Johnson, M.E, Lee, H, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-11-16
Release date:2016-12-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of the Zika virus NS3 helicase.
To be published
5T1V
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BU of 5t1v by Molmil
Crystal structure of Zika virus NS2B-NS3 protease in apo-form.
Descriptor: NS2B-NS3 protease,NS2B-NS3 protease
Authors:Nocadello, S, Light, S.H, Minasov, G, Shuvalova, L, Cardona-Correa, A.A, Ojeda, I, Vargas, J, Johnson, M.E, Lee, H, Anderson, W.F, Center for Structural Genomics of Infectious Diseases, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-08-22
Release date:2016-09-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of Zika virus NS2B-NS3 protease in apo-form.
To Be Published
1P54
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Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions
Descriptor: 5'-D(*CP*CP*AP*GP*TP*AP*CP*(BRU)P*GP*G)-3', CALCIUM ION, SODIUM ION
Authors:Hays, F.A, Vargason, J.M, Ho, P.S.
Deposit date:2003-04-25
Release date:2003-09-02
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Effect of Sequence on the Conformation of DNA Holliday Junctions
Biochemistry, 42, 2003
1P4Y
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Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions
Descriptor: 5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3', SODIUM ION
Authors:Hays, F.A, Vargason, J.M, Ho, P.S.
Deposit date:2003-04-24
Release date:2003-09-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Effect of Sequence on the Conformation of DNA Holliday Junctions
Biochemistry, 42, 2003

 

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