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PDB: 189 results

2VMY
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BU of 2vmy by Molmil
Crystal structure of F351GbsSHMT in complex with Gly and FTHF
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, GLYCINE, N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid, ...
Authors:Rajaram, V, Pai, V.R, Bisht, S, Bhavani, B.S, Appaji Rao, N, Savithri, H.S, Murthy, M.R.N.
Deposit date:2008-01-29
Release date:2008-12-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and Functional Studies of Bacillus Stearothermophilus Serine Hydroxymethyltransferase: The Role of Asn(341), Tyr(60) and Phe(351) in Tetrahydrofolate Binding.
Biochem.J., 418, 2009
2VMR
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BU of 2vmr by Molmil
Crystal structure of Y60AbsSHMT internal aldimine
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Rajaram, V, Pai, V.R, Bisht, S, Bhavani, B.S, Appaji Rao, N, Savithri, H.S, Murthy, M.R.N.
Deposit date:2008-01-29
Release date:2008-12-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and Functional Studies of Bacillus Stearothermophilus Serine Hydroxymethyltransferase: The Role of Asn(341), Tyr(60) and Phe(351) in Tetrahydrofolate Binding.
Biochem.J., 418, 2009
2VMW
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BU of 2vmw by Molmil
Crystal structure of F351GbsSHMT in complex with L-Ser
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Rajaram, V, Pai, V.R, Bisht, S, Bhavani, B.S, Appaji Rao, N, Savithri, H.S, Murthy, M.R.N.
Deposit date:2008-01-29
Release date:2008-12-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structural and Functional Studies of Bacillus Stearothermophilus Serine Hydroxymethyltransferase: The Role of N341, Y60 and F351 in Tetrahydrofolate Binding
Biochem.J., 418, 2009
2VMX
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BU of 2vmx by Molmil
Crystal structure of F351GbsSHMT in complex with L-allo-Thr
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ALLO-THREONINE, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Rajaram, V, Pai, V.R, Bisht, S, Bhavani, B.S, Appaji Rao, N, Savithri, H.S, Murthy, M.R.N.
Deposit date:2008-01-29
Release date:2008-12-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structural and Functional Studies of Bacillus Stearothermophilus Serine Hydroxymethyltransferase: The Role of Asn(341), Tyr(60) and Phe(351) in Tetrahydrofolate Binding.
Biochem.J., 418, 2009
4AFF
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BU of 4aff by Molmil
High resolution structure of a PII mutant (I86N) protein in complex with ATP, MG and FLC
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CITRATE ANION, MAGNESIUM ION, ...
Authors:Zeth, K, Fokina, O, Chellamuthu, V.R, Forchhammer, K.
Deposit date:2012-01-19
Release date:2012-02-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:An Engineered Pii Protein Variant that Senses a Novel Ligand: Atomic Resolution Structure of the Complex with Citrate.
Acta Crystallogr.,Sect.D, 68, 2012
4C46
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BU of 4c46 by Molmil
ANDREI-N-LVPAS fused to GCN4 adaptors
Descriptor: BROMIDE ION, GENERAL CONTROL PROTEIN GCN4
Authors:Albrecht, R, Alva, V, Ammelburg, M, Baer, K, Basina, E, Boichenko, I, Bonhoeffer, F, Braun, V, Chaubey, M, Chauhan, N, Chellamuthu, V.R, Coles, M, Deiss, S, Ewers, C.P, Forouzan, D, Fuchs, A, Groemping, Y, Hartmann, M.D, Hernandez Alvarez, B, Jeganantham, A, Kalev, I, Koenninger, U, Koiwai, K, Kopec, K.O, Korycinski, M, Laudenbach, B, Lehmann, K, Leo, J.C, Linke, D, Marialke, J, Martin, J, Mechelke, M, Michalik, M, Noll, A, Patzer, S.I, Scharfenberg, F, Schueckel, M, Shahid, S.A, Sulz, E, Ursinus, A, Wuertenberger, S, Zhu, H.
Deposit date:2013-08-30
Release date:2013-09-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Your Personalized Protein Structure: Andrei N. Lupas Fused to GCN4 Adaptors.
J.Struct.Biol., 186, 2014
6OWN
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BU of 6own by Molmil
Crystal structure of Msm DnaB1 intein splicing domain bound with zinc
Descriptor: Replicative DNA helicase, ZINC ION
Authors:Bacot-Davis, V.R, Belfort, M, Lennon, C.
Deposit date:2019-05-10
Release date:2020-05-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Conditional DnaB Protein Splicing Is Reversibly Inhibited by Zinc in Mycobacteria.
Mbio, 11, 2020
6MLU
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BU of 6mlu by Molmil
Cryo-EM structure of lipid droplet formation protein Seipin/BSCL2
Descriptor: Seipin
Authors:Sui, X, Arlt, H, Liao, M, Walther, C.T, Farese, V.R.
Deposit date:2018-09-28
Release date:2018-10-17
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-electron microscopy structure of the lipid droplet-formation protein seipin.
J. Cell Biol., 217, 2018
2P7T
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BU of 2p7t by Molmil
Crystal Structure of KcsA mutant
Descriptor: (1S)-2-HYDROXY-1-[(NONANOYLOXY)METHYL]ETHYL MYRISTATE, FAB-A, FAB-B, ...
Authors:Cordero-Morales, J.F, Vishwanath, J, Lewis, A, Valeria, V.R, Cortes, D.M, Roux, B, Perozo, E.
Deposit date:2007-03-20
Release date:2007-10-09
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal Structure of KcsA mutant
To be Published
1QE7
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BU of 1qe7 by Molmil
SOLUTION STRUCTURE OF A URACIL CONTAINING HAIRPIN DNA
Descriptor: URACIL CONTAINING HAIRPIN 22-MER DNA
Authors:Chary, K.V.R, Ghosh, M.
Deposit date:1999-07-13
Release date:2000-02-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural characterisation of a uracil containing hairpin DNA by NMR and molecular dynamics.
Nucleic Acids Res., 27, 1999
1R2L
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BU of 1r2l by Molmil
A parallel stranded DNA duplex with an A-G mismatch base-pair
Descriptor: 5'-D(P*CP*CP*TP*AP*TP*GP*AP*AP*AP*TP*CP*C)-3', DNA (5'-D(P*(DNR)P*(DNR)P*DAP*DTP*DAP*DAP*DTP*DTP*DTP*DAP*(DNR)P*(DNR))-3')
Authors:Venkitakrishnan, R.P, Bhaumik, S.R, Chary, K.V.R, govil, G, Liu, K, Howard, F.B, Miles, T.H.
Deposit date:2003-09-29
Release date:2004-10-12
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A parallel stranded DNA duplex with an A-G mismatch base-pair: (CCATAATTTACC:CCTATGAAATCC)
RECENT TRENDS IN BIOPHYS.RES., 2004
2I18
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BU of 2i18 by Molmil
The refined structure of C-terminal domain of an EF-hand Calcium binding Protein from Entamoeba Histolytica
Descriptor: Calcium-binding protein, LANTHANUM (III) ION
Authors:Mustafi, S.M, Mukherjee, S, Chary, K.V.R.
Deposit date:2006-08-13
Release date:2006-08-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis for the observed differential magnetic anisotropic tensorial values in calcium binding proteins.
Proteins, 65, 2006
5ZFO
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BU of 5zfo by Molmil
NMR structure of IRD12 from Capsicum annum.
Descriptor: Pin-II type proteinase inhibitor 38
Authors:Gartia, J, Barnwal, R.P, Chary, K.V.R.
Deposit date:2018-03-06
Release date:2019-05-15
Method:SOLUTION NMR
Cite:NMR structure and dynamics of inhibitory repeat domain variant 12, a plant protease inhibitor from Capsicum annuum, and its structural relationship to other plant protease inhibitors.
J.Biomol.Struct.Dyn., 2019
6SM4
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BU of 6sm4 by Molmil
AntF (apo): type II PKS acyl-carrier protein
Descriptor: Acyl carrier protein
Authors:Braeuer, A, Zhou, Q, Grammbitter, G.L.C, Schmalhofer, M, Ruehl, M, Kaila, V.R.I, Bode, H, Groll, M.
Deposit date:2019-08-21
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural snapshots of the minimal PKS system responsible for octaketide biosynthesis.
Nat.Chem., 12, 2020
4KIR
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BU of 4kir by Molmil
Crystal Structure of D-Hydantoinase from Bacillus sp. AR9 in C2221 space group
Descriptor: D-hydantoinase, MANGANESE (II) ION
Authors:Kumar, V, Kishan, K.V.R.
Deposit date:2013-05-02
Release date:2014-05-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of D-Hydantoinase from Bacillus sp. AR9 in C2221 space group
To be Published
6HXA
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BU of 6hxa by Molmil
AntI from P. luminescens catalyses terminal polyketide shortening in the biosynthesis of anthraquinones
Descriptor: AntI, TETRAETHYLENE GLYCOL, TRIETHYLENE GLYCOL
Authors:Zhou, Q, Braeuer, A, Grammbitter, G, Schmalhofer, M, Saura, P, Adihou, H, Kaila, V.R.I, Groll, M, Bode, H.
Deposit date:2018-10-16
Release date:2019-08-07
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Molecular mechanism of polyketide shortening in anthraquinone biosynthesis ofPhotorhabdus luminescens.
Chem Sci, 10, 2019
4KQN
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BU of 4kqn by Molmil
2.8 Angstrom Resolution Crystal Structure of D-Hydantoinase from Bacillus sp. AR9 in C2221 Space Group
Descriptor: D-hydantoinase, MANGANESE (II) ION
Authors:Kumar, V, Kishan, K.V.R.
Deposit date:2013-05-15
Release date:2014-05-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:2.8 Angstrom Resolution Crystal Structure of D-Hydantoinase from Bacillus sp. AR9 in C2221 Space Group
To be Published
6IF9
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BU of 6if9 by Molmil
Solution-state NMR structure of G57W human gammaS crystallin
Descriptor: Gamma-crystallin S
Authors:Sharma, S, Bari, K.J, Chary, K.V.R.
Deposit date:2018-09-19
Release date:2019-04-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of G57W mutant of human gamma S-crystallin and its involvement in cataract formation.
J. Struct. Biol., 205, 2019
6Z0C
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BU of 6z0c by Molmil
Structure of in silico modelled artificial Maquette-3 protein
Descriptor: Maquette-3, POTASSIUM ION
Authors:Baumgart, M, Roepke, M, Muehlbauer, M.E, Asami, S, Mader, S.L, Fredriksson, K, Groll, M, Gamiz-Hernandez, A.P, Kaila, V.R.I.
Deposit date:2020-05-08
Release date:2021-03-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Design of buried charged networks in artificial proteins
Nat Commun, 12, 2021
6Z35
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BU of 6z35 by Molmil
De-novo Maquette 2 protein with buried ion-pair
Descriptor: Maquette 2-1ip
Authors:Baumgart, M, Roepke, M, Muehlbauer, M, Asami, S, Mader, S, Fredriksson, K, Groll, M, Gamiz-Hernandez, A.P, Kaila, V.R.I.
Deposit date:2020-05-19
Release date:2021-04-07
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Design of buried charged networks in artificial proteins.
Nat Commun, 12, 2021
1DGO
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BU of 1dgo by Molmil
SOLUTION STRUCTURE OF A URACIL CONTAINING HAIRPIN DNA
Descriptor: URACIL CONTAINING HAIRPIN DNA
Authors:Ghosh, M, Kumar, N.V, Varshney, U, Chary, K.V.R.
Deposit date:1999-11-24
Release date:2000-05-03
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural basis for uracil DNA glycosylase interaction with uracil: NMR study.
Nucleic Acids Res., 28, 2000
6EOZ
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BU of 6eoz by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AsqJ_V72K mutant in complex with cyclopeptin (1b)
Descriptor: 2-OXOGLUTARIC ACID, Iron/alpha-ketoglutarate-dependent dioxygenase asqJ, NICKEL (II) ION, ...
Authors:Groll, M, Braeuer, A, Kaila, V.R.I.
Deposit date:2017-10-10
Release date:2018-04-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Catalytic mechanism and molecular engineering of quinolone biosynthesis in dioxygenase AsqJ.
Nat Commun, 9, 2018
1AOJ
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BU of 1aoj by Molmil
THE SH3 DOMAIN OF EPS8 EXISTS AS A NOVEL INTERTWINED DIMER
Descriptor: EPS8
Authors:Kishan, K.V.R, Newcomer, M.E.
Deposit date:1997-07-07
Release date:1998-07-08
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The SH3 domain of Eps8 exists as a novel intertwined dimer.
Nat.Struct.Biol., 4, 1997
2Y69
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BU of 2y69 by Molmil
Bovine heart cytochrome c oxidase re-refined with molecular oxygen
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, CHOLIC ACID, ...
Authors:Kaila, V.R.I, Oksanen, E, Goldman, A, Verkhovsky, M.I, Sundholm, D, Wikstrom, M.
Deposit date:2011-01-20
Release date:2011-02-23
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A Combined Quantum Chemical and Crystallographic Study on the Oxidized Binuclear Center of Cytochrome C Oxidase.
Biochim.Biophys.Acta, 1807, 2011
4B9O
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BU of 4b9o by Molmil
The PR0 Photocycle Intermediate of Photoactive Yellow Protein
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A.
Deposit date:2012-09-06
Release date:2012-11-14
Last modified:2019-02-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography
Proc.Natl.Acad.Sci.USA, 109, 2012

223532

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