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PDB: 63 results

8QY1
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Xylanase from Bacillus circulans mutant E78Q/Y69A bound to xylohexaose
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, Endo-1,4-beta-xylanase, ...
Authors:Chikunova, A, Saberi, M, Ubbink, M.
Deposit date:2023-10-25
Release date:2024-08-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Bimodal substrate binding in the active site of the glycosidase BcX.
Febs J., 291, 2024
8QY0
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BU of 8qy0 by Molmil
Xylanase from Bacillus circulans mutant E78Q/Y69A bound to xylotriose
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Endo-1,4-beta-xylanase, ZINC ION, ...
Authors:Chikunova, A, Saberi, M, Ubbink, M.
Deposit date:2023-10-25
Release date:2024-08-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Bimodal substrate binding in the active site of the glycosidase BcX.
Febs J., 291, 2024
8QY3
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BU of 8qy3 by Molmil
Xylanase from Bacillus circulans mutant E78Q/F125A bound to xylotriose
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, Endo-1,4-beta-xylanase, ...
Authors:Chikunova, A, Saberi, M, Ubbink, M.
Deposit date:2023-10-25
Release date:2024-08-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Bimodal substrate binding in the active site of the glycosidase BcX.
Febs J., 291, 2024
8R86
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BU of 8r86 by Molmil
Xylanase from Bacillus circulans mutant E78Q/W71A
Descriptor: Endo-1,4-beta-xylanase
Authors:Chikunova, A, Saberi, M, Ubbink, M.
Deposit date:2023-11-28
Release date:2024-08-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Bimodal substrate binding in the active site of the glycosidase BcX.
Febs J., 291, 2024
8R85
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BU of 8r85 by Molmil
Xylanase from Bacillus circulans mutant E78Q/W9A
Descriptor: DI(HYDROXYETHYL)ETHER, Endo-1,4-beta-xylanase, GLYCEROL
Authors:Chikunova, A, Saberi, M, Ubbink, M.
Deposit date:2023-11-28
Release date:2024-08-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Bimodal substrate binding in the active site of the glycosidase BcX.
Febs J., 291, 2024
8R88
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Structure of P107T BlaC from Mycobacterium tuberculosis
Descriptor: Beta-lactamase, GLYCEROL, PHOSPHATE ION
Authors:Chikunova, A, Ubbink, M.
Deposit date:2023-11-28
Release date:2024-03-20
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Conserved proline residues prevent dimerization and aggregation in the beta-lactamase BlaC.
Protein Sci., 33, 2024
2IDF
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BU of 2idf by Molmil
P. aeruginosa azurin N42C/M64E double mutant, BMME-linked dimer
Descriptor: 1-[PYRROL-1-YL-2,5-DIONE-METHOXYMETHYL]-PYRROLE-2,5-DIONE, Azurin, COPPER (II) ION, ...
Authors:Einsle, O, de Jongh, T.E, Hoffmann, M, Cavazzini, D, Rossi, G.L, Ubbink, M, Canters, G.W.
Deposit date:2006-09-15
Release date:2008-03-18
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Electron transfer in a crosslinked protein dimer mediated by a hydrogen-bonded network across the dimer interface
To be Published
8RFZ
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Structure of E166A BlaC from Mycobacterium tuberculosis at pH 4.5
Descriptor: Beta-lactamase, SULFATE ION
Authors:Sun, J, Bruenle, S, Ubbink, M.
Deposit date:2023-12-13
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:A low-barrier proton shared between two aspartates acts as a conformational switch that changes the substrate specificity of the beta-lactamase BlaC.
Int.J.Biol.Macromol., 278, 2024
8RII
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BU of 8rii by Molmil
Structure of E166A BlaC from Mycobacterium tuberculosis at pH 6.5
Descriptor: Beta-lactamase
Authors:Sun, J, Bruenle, S, Ubbink, M.
Deposit date:2023-12-18
Release date:2024-08-28
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A low-barrier proton shared between two aspartates acts as a conformational switch that changes the substrate specificity of the beta-lactamase BlaC.
Int.J.Biol.Macromol., 278, 2024
8RG2
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BU of 8rg2 by Molmil
Structure of BlaC from Mycobacterium tuberculosis at pH 8
Descriptor: Beta-lactamase, GLYCEROL
Authors:Sun, J, Bruenle, S, Ubbink, M.
Deposit date:2023-12-13
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A low-barrier proton shared between two aspartates acts as a conformational switch that changes the substrate specificity of the beta-lactamase BlaC.
Int.J.Biol.Macromol., 278, 2024
7A5U
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BU of 7a5u by Molmil
Structure of E37A BlaC from Mycobacterium tuberculosis
Descriptor: Beta-lactamase
Authors:Chikunova, A, Ahmad, M.U, Perrakis, A, Ubbink, M.
Deposit date:2020-08-21
Release date:2021-04-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Conserved residues Glu37 and Trp229 play an essential role in protein folding of beta-lactamase.
Febs J., 288, 2021
7A74
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Structure of G132N BlaC from Mycobacterium tuberculosis
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase, GLYCEROL, ...
Authors:Chikunova, A, Ahmad, M.U, Perrakis, A, Ubbink, M.
Deposit date:2020-08-27
Release date:2021-05-19
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Two beta-Lactamase Variants with Reduced Clavulanic Acid Inhibition Display Different Millisecond Dynamics.
Antimicrob.Agents Chemother., 65, 2021
7A6Z
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BU of 7a6z by Molmil
Structure of P226G BlaC from Mycobacterium tuberculosis
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase, GLYCEROL, ...
Authors:Chikunova, A, Ahmad, M.U, Perrakis, A, Ubbink, M.
Deposit date:2020-08-27
Release date:2021-10-06
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Conserved proline residues prevent dimerization and aggregation in the beta-lactamase BlaC.
Protein Sci., 33, 2024
7A72
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BU of 7a72 by Molmil
Structure of G132S BlaC from Mycobacterium tuberculosis bound to the trans-enamine adduct of sulbactam
Descriptor: ACETATE ION, Beta-lactamase, GLYCEROL, ...
Authors:Chikunova, A, Ahmad, M.U, Perrakis, A, Ubbink, M.
Deposit date:2020-08-27
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The G132S Mutation Enhances the Resistance of Mycobacterium tuberculosis beta-Lactamase against Sulbactam.
Biochemistry, 60, 2021
7A5W
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BU of 7a5w by Molmil
Structure of D172N BlaC from Mycobacterium tuberculosis
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase
Authors:Chikunova, A, Ahmad, M.U, Perrakis, A, Ubbink, M.
Deposit date:2020-08-24
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The G132S Mutation Enhances the Resistance of Mycobacterium tuberculosis beta-Lactamase against Sulbactam.
Biochemistry, 60, 2021
7A5T
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BU of 7a5t by Molmil
Crystal structure of A55E mutant of BlaC from Mycobacterium tuberculosis
Descriptor: Beta-lactamase, GLYCEROL, PHOSPHATE ION
Authors:Chikunova, A, Ahmad, M.U, Perrakis, A, Ubbink, M.
Deposit date:2020-08-21
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The G132S Mutation Enhances the Resistance of Mycobacterium tuberculosis beta-Lactamase against Sulbactam.
Biochemistry, 60, 2021
7A71
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BU of 7a71 by Molmil
Structure of G132S BlaC from Mycobacterium tuberculosis
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-lactamase, GLYCEROL, ...
Authors:Chikunova, A, Ahmad, M.U, Perrakis, A, Ubbink, M.
Deposit date:2020-08-27
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The G132S Mutation Enhances the Resistance of Mycobacterium tuberculosis beta-Lactamase against Sulbactam.
Biochemistry, 60, 2021
2BZ7
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BU of 2bz7 by Molmil
Oxidized and reduced structures of a mutant Plastocyanin of fern
Descriptor: COPPER (II) ION, PLASTOCYANIN
Authors:Hulsker, R, Thomassen, E.A.J, Ubbink, M.
Deposit date:2005-08-12
Release date:2006-11-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Protonation of a Histidine Copper Ligand in Fern Plastocyanin.
J.Am.Chem.Soc., 129, 2007
2BH5
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BU of 2bh5 by Molmil
X-ray structure of the M100K variant of ferric cyt c-550 from Paracoccus versutus determined at 295 K.
Descriptor: CYTOCHROME C-550, HEME C
Authors:Worrall, J.A.R, van Roon, A.-M.M, Ubbink, M, Canters, G.W.
Deposit date:2005-01-07
Release date:2005-05-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The Effect of Replacing the Axial Methionine Ligand with a Lysine Residue in Cytochrome C-550 from Paracoccus Versutus Assessed by X-Ray Crystallography and Unfolding.
FEBS J., 272, 2005
2BZC
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BU of 2bzc by Molmil
Oxidized and reduced structures of a mutant Plastocyanin of fern
Descriptor: COPPER (I) ION, PLASTOCYANIN
Authors:Hulsker, R, Thomassen, E.A.J, Ubbink, M.
Deposit date:2005-08-15
Release date:2006-11-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Protonation of a Histidine Copper Ligand in Fern Plastocyanin.
J.Am.Chem.Soc., 129, 2007
2BGV
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BU of 2bgv by Molmil
X-ray structure of ferric cytochrome c-550 from Paracoccus versutus
Descriptor: CYTOCHROME C-550, HEME C
Authors:Worrall, J.A.R, Van Roon, A.-M.M, Ubbink, M, Canters, G.W.
Deposit date:2005-01-05
Release date:2005-05-11
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Effect of Replacing the Axial Methionine Ligand with a Lysine Residue in Cytochrome C-550 from Paracoccus Versutus Assessed by X-Ray Crystallography and Unfolding.
FEBS J., 272, 2005
2BH4
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BU of 2bh4 by Molmil
X-ray structure of the M100K variant of ferric cyt c-550 from Paracoccus versutus determined at 100 K.
Descriptor: CYTOCHROME C-550, HEME C
Authors:Worrall, J.A.R, Van Roon, A.-M.M, Ubbink, M, Canters, G.W.
Deposit date:2005-01-07
Release date:2005-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The Effect of Replacing the Axial Methionine Ligand with a Lysine Residue in Cytochrome C-550 from Paracoccus Versutus Assessed by X-Ray Crystallography and Unfolding.
FEBS J., 272, 2005
2P80
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BU of 2p80 by Molmil
Solution structure of the complex between nitrite reductase and pseudoazurin from A. faecalis
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, GADOLINIUM ATOM, ...
Authors:Vlasie, M.D, Ubbink, M.
Deposit date:2007-03-21
Release date:2007-12-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Low resolution solution structure of the 152 kDa complex between nitrite reductase and pseudoazurin from A. faecalis by paramagnetic NMR.
To be Published
2M56
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BU of 2m56 by Molmil
The structure of the complex of cytochrome P450cam and its electron donor putidaredoxin determined by paramagnetic NMR spectroscopy
Descriptor: CAMPHOR, Camphor 5-monooxygenase, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Hiruma, Y, Hass, M.A.S, Ubbink, M.
Deposit date:2013-02-14
Release date:2013-08-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The structure of the cytochrome p450cam-putidaredoxin complex determined by paramagnetic NMR spectroscopy and crystallography.
J.Mol.Biol., 425, 2013
2IWE
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BU of 2iwe by Molmil
Structure of a cavity mutant (H117G) of Pseudomonas aeruginosa azurin
Descriptor: 1,1'-HEXANE-1,6-DIYLBIS(1H-IMIDAZOLE), AZURIN, ZINC ION
Authors:De Jongh, T.E, Van Roon, A.M.M, Prudencio, M, Ubbink, M, Canters, G.W.
Deposit date:2006-06-29
Release date:2007-06-12
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Click-Chemistry with an Active Site Variant of Azurin
Eur.J.Inorg.Chem., 2006, 2006

226707

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