2MXK
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2MXJ
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2MXL
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1EKA
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![BU of 1eka by Molmil](/molmil-images/mine/1eka) | NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2 | Descriptor: | RNA (5'-R(*GP*AP*GP*UP*GP*CP*UP*C)-3') | Authors: | Chen, X, McDowell, J.A, Kierzek, R, Krugh, T.R, Turner, D.H. | Deposit date: | 2000-03-07 | Release date: | 2000-11-13 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2). Biochemistry, 39, 2000
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1EKD
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![BU of 1ekd by Molmil](/molmil-images/mine/1ekd) | NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2 | Descriptor: | RNA (5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3') | Authors: | Chen, X, McDowell, J.A, Kierzek, R, Krugh, T.R, Turner, D.H. | Deposit date: | 2000-03-07 | Release date: | 2000-11-13 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2). Biochemistry, 39, 2000
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1MV2
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![BU of 1mv2 by Molmil](/molmil-images/mine/1mv2) | The tandem, Face-to-Face AP Pairs in 5'(rGGCAPGCCU)2 | Descriptor: | 5'-R(*GP*GP*CP*AP*(P5P)P*GP*CP*CP*U)-3' | Authors: | Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H. | Deposit date: | 2002-09-24 | Release date: | 2002-12-18 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2 Biochemistry, 41, 2002
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1MV6
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![BU of 1mv6 by Molmil](/molmil-images/mine/1mv6) | The tandem, Sheared PP Pairs in 5'(rGGCPPGCCU)2 | Descriptor: | 5'-R(*GP*GP*CP*(P5P)P*(P5P)P*GP*CP*CP*U)-3' | Authors: | Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H. | Deposit date: | 2002-09-24 | Release date: | 2002-12-18 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2 Biochemistry, 41, 2002
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1MV1
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![BU of 1mv1 by Molmil](/molmil-images/mine/1mv1) | The Tandem, Sheared PA Pairs in 5'(rGGCPAGCCU)2 | Descriptor: | 5'-R(*GP*GP*CP*(P5P)P*AP*GP*CP*CP*U)-3' | Authors: | Znosko, B.M, Burkard, M.E, Krugh, T.R, Turner, D.H. | Deposit date: | 2002-09-24 | Release date: | 2002-12-18 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2 Biochemistry, 41, 2002
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1MUV
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![BU of 1muv by Molmil](/molmil-images/mine/1muv) | Sheared A(anti)-A(anti) Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2 | Descriptor: | 5'-R(*GP*GP*CP*AP*AP*GP*CP*CP*U)-3' | Authors: | Znosko, B.M, Burkard, M.E, Schroeder, S.J, Krugh, T.R, Turner, D.H. | Deposit date: | 2002-09-24 | Release date: | 2002-12-18 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Sheared Aanti-Aanti Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of
5'(rGGCAAGCCU)2 Biochemistry, 41, 2002
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1MIS
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7RQ5
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333D
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![BU of 333d by Molmil](/molmil-images/mine/333d) | THE CRYSTAL STRUCTURE OF AN RNA OLIGOMER INCORPORATING TANDEM ADENOSINE-INOSINE MISMATCHES | Descriptor: | CALCIUM ION, RNA (5'-R(*CP*GP*CP*AP*IP*GP*CP*G)-3') | Authors: | Carter, R.J, Baeyens, K.J, SantaLucia Jr, J, Turner, D.H, Holbrook, S.R. | Deposit date: | 1997-05-20 | Release date: | 1997-10-16 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.52 Å) | Cite: | The crystal structure of an RNA oligomer incorporating tandem adenosine-inosine mismatches. Nucleic Acids Res., 25, 1997
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5V2R
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![BU of 5v2r by Molmil](/molmil-images/mine/5v2r) | Structure of a GA Rich 8x8 Nucleotide RNA Internal Loop | Descriptor: | RNA (5'-R(*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*A)-3') | Authors: | Kauffmann, A.D, Kennedy, S.D, Turner, D.H. | Deposit date: | 2017-03-06 | Release date: | 2017-07-26 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Nuclear Magnetic Resonance Structure of an 8 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions. Biochemistry, 56, 2017
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2DD1
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![BU of 2dd1 by Molmil](/molmil-images/mine/2dd1) | Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG | Descriptor: | 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3' | Authors: | Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H. | Deposit date: | 2006-01-19 | Release date: | 2006-06-13 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA Biochemistry, 45, 2006
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2DD3
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![BU of 2dd3 by Molmil](/molmil-images/mine/2dd3) | An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack | Descriptor: | 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3' | Authors: | Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H. | Deposit date: | 2006-01-19 | Release date: | 2006-06-13 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA Biochemistry, 45, 2006
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2DD2
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![BU of 2dd2 by Molmil](/molmil-images/mine/2dd2) | An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack | Descriptor: | 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3' | Authors: | Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H. | Deposit date: | 2006-01-19 | Release date: | 2006-06-13 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA Biochemistry, 45, 2006
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2G3S
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![BU of 2g3s by Molmil](/molmil-images/mine/2g3s) | RNA structure containing GU base pairs | Descriptor: | 5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3', MAGNESIUM ION | Authors: | Jang, S.B, Hung, L.W, Jeong, M.S, Holbrook, E.L, Chen, X, Turner, D.H, Holbrook, S.R. | Deposit date: | 2006-02-20 | Release date: | 2007-01-16 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.499 Å) | Cite: | The crystal structure at 1.5 angstroms resolution of an RNA octamer duplex containing tandem G.U basepairs Biophys.J., 90, 2006
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1NTS
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![BU of 1nts by Molmil](/molmil-images/mine/1nts) | 5'(dCCPUPCPCPUPUP)3':3'(rAGGAGGAAA)5', where P=propynyl | Descriptor: | 5'-D(*(5PC)P*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3' | Authors: | Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H. | Deposit date: | 2003-01-30 | Release date: | 2003-06-10 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines J.Am.Chem.Soc., 125, 2003
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1NTQ
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![BU of 1ntq by Molmil](/molmil-images/mine/1ntq) | 5'(dCCUCCUU)3':3'(rAGGAGGAAA)5' | Descriptor: | 5'-D(*CP*CP*UP*CP*CP*UP*U)-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3' | Authors: | Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H. | Deposit date: | 2003-01-30 | Release date: | 2003-06-10 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines J.Am.Chem.Soc., 125, 2003
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1NTT
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![BU of 1ntt by Molmil](/molmil-images/mine/1ntt) | 5'(dCPCPUPCPCPUPUP)3':(rAGGAGGAAA)5', where P=propynyl | Descriptor: | 5'-D(*CP*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3', 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3' | Authors: | Znosko, B.M, Barnes III, T.W, Krugh, T.R, Turner, D.H. | Deposit date: | 2003-01-30 | Release date: | 2003-06-10 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | NMR Studies of DNA Single Strands and DNA:RNA Hybrids With and Without 1-Propynylation at C5 of Oligopyrimidines J.Am.Chem.Soc., 125, 2003
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6N8I
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6N8F
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6N8H
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1YFV
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1XV0
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![BU of 1xv0 by Molmil](/molmil-images/mine/1xv0) | Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG | Descriptor: | 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3' | Authors: | Chen, G, Znosko, B.M, Kennedy, S.D, Krugh, T.R, Turner, D.H. | Deposit date: | 2004-10-26 | Release date: | 2004-11-09 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs Biochemistry, 44, 2005
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