Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 211 件

5ZM0
DownloadVisualize
BU of 5zm0 by Molmil
X-ray structure of animal-like Cryptochrome from Chlamydomonas reinhardtii
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Cryptochrome photoreceptor, ...
著者Franz, S, Ignatz, E, Wenzel, S, Zielosko, H, Gusti Ngurah Putu, E.P, Maestre-Reyna, M, Tsai, M.-D, Yamamoto, J, Mittag, M, Essen, L.-O.
登録日2018-03-31
公開日2018-07-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii
Nucleic Acids Res., 46, 2018
2BAX
DownloadVisualize
BU of 2bax by Molmil
Atomic Resolution Structure of the Double Mutant (K53,56M) of Bovine Pancreatic Phospholipase A2
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, ...
著者Sekar, K, Yogavel, M, Velmurugan, D, Dauter, Z, Dauter, M, Tsai, M.D.
登録日2005-10-15
公開日2005-10-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Atomic resolution (0.97 A) structure of the triple mutant (K53,56,121M) of bovine pancreatic phospholipase A2.
Acta Crystallogr.,Sect.F, 61, 2005
2B96
DownloadVisualize
BU of 2b96 by Molmil
Third Calcium ion found in an inhibitor bound phospholipase A2
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-METHOXYBENZOIC ACID, CALCIUM ION, ...
著者Sekar, K, Velmurugan, D, Yamane, T, Tsai, M.D.
登録日2005-10-11
公開日2006-03-28
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Third Calcium ion found in an inhibitor bound phospholipase A2
Acta Crystallogr.,Sect.D, 62, 2006
8KCM
DownloadVisualize
BU of 8kcm by Molmil
MmCPDII-DNA complex containing low-dosage, light induced repaired DNA.
分子名称: Deoxyribodipyrimidine photo-lyase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Maestre-Reyna, M, Wang, P.-H, Nango, E, Hosokawa, Y, Saft, M, Furrer, A, Yang, C.-H, Ngura Putu, E.P.G, Wu, W.-J, Emmerich, H.-J, Engilberge, S, Caramello, N, Wranik, M, Glover, H.L, Franz-Badur, S, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Liao, J.-H, Weng, J.-H, Gad, W, Chang, C.-W, Pang, A.H, Gashi, D, Beale, E, Ozerov, D, Milne, C, Cirelli, C, Bacellar, C, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Spadaccini, R, Royant, A, Yamamoto, J, Iwata, S, Standfuss, J, Essen, L.-O, Bessho, Y, Tsai, M.-D.
登録日2023-08-08
公開日2023-11-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Visualizing the DNA repair process by a photolyase at atomic resolution.
Science, 382, 2023
8IO9
DownloadVisualize
BU of 8io9 by Molmil
Cryo-EM structure of cyanobacteria phosphoketolase complexed with AMPPNP in dodecameric assembly
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Probable phosphoketolase, ...
著者Chang, C.-W, Tsai, M.-D.
登録日2023-03-10
公開日2023-06-28
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.36 Å)
主引用文献An ATP-sensitive phosphoketolase regulates carbon fixation in cyanobacteria.
Nat Metab, 5, 2023
8IOE
DownloadVisualize
BU of 8ioe by Molmil
Cryo-EM structure of cyanobacteria phosphoketolase in dodecameric assembly
分子名称: MAGNESIUM ION, Probable phosphoketolase, THIAMINE DIPHOSPHATE
著者Chang, C.-W, Tsai, M.-D.
登録日2023-03-11
公開日2023-06-28
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.86 Å)
主引用文献An ATP-sensitive phosphoketolase regulates carbon fixation in cyanobacteria.
Nat Metab, 5, 2023
8IO6
DownloadVisualize
BU of 8io6 by Molmil
Cryo-EM structure of phosphoketolase from Bifidobacterium longum in octameric assembly
分子名称: MAGNESIUM ION, THIAMINE DIPHOSPHATE, Xylulose5phosphatefructose6phosphate phosphoketolase
著者Chang, C.-W, Tsai, M.-D.
登録日2023-03-10
公開日2023-06-28
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.68 Å)
主引用文献An ATP-sensitive phosphoketolase regulates carbon fixation in cyanobacteria.
Nat Metab, 5, 2023
5XZW
DownloadVisualize
BU of 5xzw by Molmil
Crystal structure of Rad53 1-466
分子名称: Serine/threonine-protein kinase RAD53
著者Weng, J.H, Tsai, M.D.
登録日2017-07-14
公開日2017-10-11
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Phospho-Priming Confers Functionally Relevant Specificities for Rad53 Kinase Autophosphorylation
Biochemistry, 56, 2017
8IOA
DownloadVisualize
BU of 8ioa by Molmil
Cryo-EM structure of cyanobacteria phosphoketolase
分子名称: MAGNESIUM ION, Probable phosphoketolase, THIAMINE DIPHOSPHATE
著者Chang, C.-W, Tsai, M.-D.
登録日2023-03-10
公開日2023-06-28
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.63 Å)
主引用文献An ATP-sensitive phosphoketolase regulates carbon fixation in cyanobacteria.
Nat Metab, 5, 2023
8IO8
DownloadVisualize
BU of 8io8 by Molmil
Cryo-EM structure of cyanobacteria phosphoketolase complexed with AMPPNPin dimeric assembly
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Probable phosphoketolase, ...
著者Chang, C.-W, Tsai, M.-D.
登録日2023-03-10
公開日2023-06-28
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.17 Å)
主引用文献An ATP-sensitive phosphoketolase regulates carbon fixation in cyanobacteria.
Nat Metab, 5, 2023
8IO7
DownloadVisualize
BU of 8io7 by Molmil
Cryo-EM structure of phosphoketolase from Bifidobacterium longum in dimeric assembly
分子名称: MAGNESIUM ION, THIAMINE DIPHOSPHATE, Xylulose5phosphatefructose6phosphate phosphoketolase
著者Chang, C.-W, Tsai, M.-D.
登録日2023-03-10
公開日2023-06-28
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.62 Å)
主引用文献An ATP-sensitive phosphoketolase regulates carbon fixation in cyanobacteria.
Nat Metab, 5, 2023
5CWR
DownloadVisualize
BU of 5cwr by Molmil
Crystal Structure of human DNA polymerase lambda L431A mutant in complex with a one nucleotide DNA gap and dCTP
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), ...
著者Liu, M.S, Tsai, M.D.
登録日2015-07-28
公開日2016-02-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5DDY
DownloadVisualize
BU of 5ddy by Molmil
Binary complex of human Polymerase lambda with dCTP
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA polymerase lambda, MAGNESIUM ION, ...
著者Liu, M.S, Tsai, M.D.
登録日2015-08-25
公開日2016-02-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.36 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
1CEH
DownloadVisualize
BU of 1ceh by Molmil
STRUCTURE AND FUNCTION OF THE CATALYTIC SITE MUTANT ASP99ASN OF PHOSPHOLIPASE A2: ABSENCE OF CONSERVED STRUCTURAL WATER
分子名称: CALCIUM ION, PHOSPHOLIPASE A2
著者Kumar, A, Sekharudu, C, Ramakrishnan, B, Dupureur, C.M, Zhu, H, Tsai, M.-D, Sundaralingam, M.
登録日1994-11-16
公開日1995-02-07
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure and function of the catalytic site mutant Asp 99 Asn of phospholipase A2: absence of the conserved structural water.
Protein Sci., 3, 1994
5DKW
DownloadVisualize
BU of 5dkw by Molmil
Ternary crystal structure of polymerase lambda with a GA mispair at the primer terminus with Ca2+ in the active
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), ...
著者Liu, M.S, Tsai, M.D.
登録日2015-09-04
公開日2016-02-24
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.689 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
8J9X
DownloadVisualize
BU of 8j9x by Molmil
Cryo-EM structure of the African swine fever virus topoisomerase 2 complexed with Cut02aDNA and m-AMSA (EDI-3)
分子名称: DNA (5'-D(*GP*AP*GP*GP*TP*AP*TP*GP*TP*AP*GP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*CP*GP*CP*CP*TP*AP*CP*AP*TP*AP*CP*CP*TP*C)-3'), DNA topoisomerase 2, ...
著者Chang, C.-W, Tsai, M.-D.
登録日2023-05-05
公開日2024-02-07
最終更新日2024-04-17
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase.
Commun Chem, 7, 2024
5CHG
DownloadVisualize
BU of 5chg by Molmil
Human DNA polymerase lambda L431A mutant- MgdGTP binary and complex with 6 paired DNA
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), ...
著者Liu, M.S, Tsai, M.D.
登録日2015-07-10
公開日2016-02-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5CP2
DownloadVisualize
BU of 5cp2 by Molmil
Human DNA polymerase lambda L431A mutant- Apoenzyme and complex with 6 paired DNA
分子名称: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), DNA polymerase lambda, ...
著者Liu, M.S, Tsai, M.D.
登録日2015-07-21
公開日2016-02-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5CJ7
DownloadVisualize
BU of 5cj7 by Molmil
Human DNA polymerase lambda L431A mutant- MgdTTP binary and complex with 6 paired DNA
分子名称: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), DNA polymerase lambda, ...
著者Liu, M.S, Tsai, M.D.
登録日2015-07-14
公開日2016-02-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.901 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
8XMI
DownloadVisualize
BU of 8xmi by Molmil
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, C1 symmetry
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Ktr system potassium uptake protein A, Ktr system potassium uptake protein B, ...
著者Chang, Y.K, Chiang, W.T, Hu, N.J, Tsai, M.D.
登録日2023-12-27
公開日2024-04-03
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural basis and synergism of ATP and Na + activation in bacterial K + uptake system KtrAB.
Nat Commun, 15, 2024
8XMH
DownloadVisualize
BU of 8xmh by Molmil
Potassium transporter KtrAB from Bacillus subtilis in ATP-bound state with addition of EDTA and EGTA, vertical C2 symmetry axis
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Ktr system potassium uptake protein A, Ktr system potassium uptake protein B, ...
著者Chang, Y.K, Chiang, W.T, Hu, N.J, Tsai, M.D.
登録日2023-12-27
公開日2024-04-03
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献Structural basis and synergism of ATP and Na + activation in bacterial K + uptake system KtrAB.
Nat Commun, 15, 2024
5DDM
DownloadVisualize
BU of 5ddm by Molmil
Human DNA polymerase lambda- Apoenzyme and complex with 6 paired DNA
分子名称: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), DNA polymerase lambda, ...
著者Liu, M.S, Tsai, M.D.
登録日2015-08-25
公開日2016-02-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.802 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5CR0
DownloadVisualize
BU of 5cr0 by Molmil
Human DNA polymerase lambda L431A mutant- MgdCTP binary and complex with 6 paired DNA
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), ...
著者Liu, M.S, Tsai, M.D.
登録日2015-07-22
公開日2016-02-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016
5ZLC
DownloadVisualize
BU of 5zlc by Molmil
Binary complex of human DNA Polymerase Mu with MndGTP
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA-directed DNA/RNA polymerase mu, MANGANESE (II) ION, ...
著者Chang, Y.K, Wu, W.J, Tsai, M.D.
登録日2018-03-27
公開日2019-05-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions.
J.Am.Chem.Soc., 141, 2019
5CB1
DownloadVisualize
BU of 5cb1 by Molmil
Apo enzyme of human Polymerase lambda
分子名称: DNA polymerase lambda
著者Liu, M.S, Tsai, M.D.
登録日2015-06-30
公開日2016-02-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda
J.Am.Chem.Soc., 138, 2016

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon