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PDB: 96 件
1VFG
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BU of 1vfg by Molmil
Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, RNA (75-MER), poly A polymerase
著者Tomita, K, Fukai, S, Ishitani, R, Ueda, T, Takeuchi, N, Vassylyev, D.G, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-04-13
公開日2004-08-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis for template-independent RNA polymerization.
Nature, 430, 2004
2DR8
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BU of 2dr8 by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDC and CTP
分子名称: CCA-adding enzyme, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DR9
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BU of 2dr9 by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDCC
分子名称: CCA-adding enzyme, SULFATE ION, tRNA (34-MER)
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DRA
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BU of 2dra by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDCC and ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CCA-adding enzyme, MAGNESIUM ION, ...
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DR5
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BU of 2dr5 by Molmil
Complex structure of CCA adding enzyme with mini-helix lacking CCA
分子名称: CCA-adding enzyme, SULFATE ION, tRNA (32-MER)
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-10-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DR7
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BU of 2dr7 by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDC
分子名称: CCA-adding enzyme, SULFATE ION, tRNA (33-MER)
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DRB
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BU of 2drb by Molmil
Complex structure of CCA-adding enzyme with tRNAminiCCA
分子名称: CCA-adding enzyme, SULFATE ION, tRNA (35-MER)
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DVI
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BU of 2dvi by Molmil
Complex structure of CCA-adding enzyme, mini-DCC and CTP
分子名称: CCA-adding enzyme, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-07-31
公開日2006-11-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
4WC4
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BU of 4wc4 by Molmil
tRNA-processing enzyme complex 2
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (74-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.501 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
8XHR
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BU of 8xhr by Molmil
Crystal structure of Mycobacterium tuberculosis MenT3 bound with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Nucleotidyl transferase AbiEii/AbiGii toxin family protein
著者Liu, J, Yashiro, Y, Tomita, K.
登録日2023-12-18
公開日2024-02-28
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate specificity of Mycobacterium tuberculosis tRNA terminal nucleotidyltransferase toxin MenT3.
Nucleic Acids Res., 52, 2024
4WBY
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BU of 4wby by Molmil
tRNA-processing enzyme (apo form I)
分子名称: GLYCEROL, Poly A polymerase, SULFATE ION
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
8GU3
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BU of 8gu3 by Molmil
Crystal structure of Caenorhabditis elegans METT-10 methyltransferase domain
分子名称: U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase
著者Ju, J, Tomita, K.
登録日2022-09-09
公開日2023-02-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Structure of the Caenorhabditis elegans m6A methyltransferase METT10 that regulates SAM homeostasis.
Nucleic Acids Res., 51, 2023
7BYY
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BU of 7byy by Molmil
Crystal structure of bacterial toxin
分子名称: Acetyltransferase
著者Zhang, C, Yashiro, Y, Tomita, K.
登録日2020-04-25
公開日2020-06-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.799 Å)
主引用文献Substrate specificities of Escherichia coli ItaT that acetylates aminoacyl-tRNAs.
Nucleic Acids Res., 48, 2020
4WC5
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BU of 4wc5 by Molmil
Structure of tRNA-processing enzyme complex 3
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (74-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.41 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC6
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BU of 4wc6 by Molmil
Structure of tRNA-processing enzyme complex 4
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-mer)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.41 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC3
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BU of 4wc3 by Molmil
Structure of tRNA-processing enzyme complex 1
分子名称: Poly A polymerase, RNA 76-mer
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC0
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BU of 4wc0 by Molmil
tRNA-processing enzyme with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly A polymerase
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC2
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BU of 4wc2 by Molmil
Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION, Poly A polymerase, ...
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC1
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BU of 4wc1 by Molmil
Structure of tRNA-processing enzyme with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC7
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BU of 4wc7 by Molmil
Structure of tRNA-processing enzyme complex 5
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.102 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
6AJN
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BU of 6ajn by Molmil
Crystal structure of AtaTR bound with AcCoA
分子名称: ACETYL COENZYME *A, DUF1778 domain-containing protein, N-acetyltransferase
著者Yashiro, Y, Yamashita, S, Tomita, K.
登録日2018-08-28
公開日2019-01-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.302 Å)
主引用文献Crystal Structure of the Enterohemorrhagic Escherichia coli AtaT-AtaR Toxin-Antitoxin Complex.
Structure, 27, 2019
6AJM
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BU of 6ajm by Molmil
Crystal structure of apo AtaTR
分子名称: DUF1778 domain-containing protein, N-acetyltransferase, TRIETHYLENE GLYCOL
著者Yashiro, Y, Yamashita, S, Tomita, K.
登録日2018-08-28
公開日2019-01-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.604 Å)
主引用文献Crystal Structure of the Enterohemorrhagic Escherichia coli AtaT-AtaR Toxin-Antitoxin Complex.
Structure, 27, 2019
8IE2
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BU of 8ie2 by Molmil
Crystal structure of Lactiplantibacillus plantarum GlyRS
分子名称: Glycine--tRNA ligase alpha subunit, Glycine--tRNA ligase beta subunit
著者Yamashita, S, Tomita, K.
登録日2023-02-15
公開日2023-06-07
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Mechanism of tRNA recognition by heterotetrameric glycyl-tRNA synthetase from lactic acid bacteria.
J.Biochem., 174, 2023
6L8U
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BU of 6l8u by Molmil
Crystal structure of human BCDIN3D in complex with SAH
分子名称: RNA 5'-monophosphate methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Liu, Y, Martinez, A, Yamashita, S, Tomita, K.
登録日2019-11-07
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.925 Å)
主引用文献Crystal structure of human cytoplasmic tRNAHis-specific 5'-monomethylphosphate capping enzyme.
Nucleic Acids Res., 48, 2020
6LMI
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BU of 6lmi by Molmil
Crystal structure of HIV-1 integrase catalytic core domain in complex with 2-(tert-butoxy)-2-[3-(3,4-dihydro-2H-1-benzopyran-6-yl)-6-methanesulfonamido-2,3',4',5-tetramethyl-[1,1'-biphenyl]-4-yl]acetic acid
分子名称: (2S)-2-[2-(3,4-dihydro-2H-chromen-6-yl)-4-(3,4-dimethylphenyl)-3,6-dimethyl-5-(methylsulfonylamino)phenyl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid, 1,2-ETHANEDIOL, Integrase catalytic, ...
著者Sugiyama, S, Iwaki, T, Tamura, Y, Tomita, K, Matsuoka, E, Arita, S, Seki, T, Yoshinaga, T, Kawasuji, T.
登録日2019-12-25
公開日2020-09-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Discovery of novel integrase-LEDGF/p75 allosteric inhibitors based on a benzene scaffold.
Bioorg.Med.Chem., 28, 2020

 

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