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PDB: 111 results

7DPJ
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BU of 7dpj by Molmil
H-Ras Q61L in complex with GppNHp (state 1) after structural transition by humidity control
Descriptor: CALCIUM ION, GTPase HRas, MAGNESIUM ION, ...
Authors:Taniguchi, H, Matsumoto, S, Miyamoto, R, Kawamura, T, Kumasaka, T, Kataoka, T.
Deposit date:2020-12-19
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.976 Å)
Cite:Oncogenic mutations Q61L and Q61H confer active form-like structural features to the inactive state (state 1) conformation of H-Ras protein.
Biochem.Biophys.Res.Commun., 565, 2021
7DPH
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BU of 7dph by Molmil
H-Ras Q61H in complex with GppNHp (state 1) after structural transition by humidity control
Descriptor: GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Taniguchi, H, Matsumoto, S, Kawamura, T, Kumasaka, T, Kataoka, T.
Deposit date:2020-12-19
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Oncogenic mutations Q61L and Q61H confer active form-like structural features to the inactive state (state 1) conformation of H-Ras protein.
Biochem.Biophys.Res.Commun., 565, 2021
1VDK
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BU of 1vdk by Molmil
Crystal structure of fumarase from thermus thermophilus HB8
Descriptor: Fumarate hydratase class II
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-23
Release date:2004-04-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of fumarase from thermus thermophilus HB8
To be Published
3VKJ
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BU of 3vkj by Molmil
Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase, octameric form
Descriptor: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, Isopentenyl-diphosphate delta-isomerase
Authors:Nakatani, H, Goda, S, Unno, H, Nagai, T, Yoshimura, T, Hemmi, H.
Deposit date:2011-11-17
Release date:2012-05-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Substrate-Induced Change in the Quaternary Structure of Type 2 Isopentenyl Diphosphate Isomerase from Sulfolobus shibatae.
J.Bacteriol., 194, 2012
1EVI
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BU of 1evi by Molmil
THREE-DIMENSIONAL STRUCTURE OF THE PURPLE INTERMEDIATE OF PORCINE KIDNEY D-AMINO ACID OXIDASE
Descriptor: 3,4-DIHYDRO-2H-PYRROLIUM-5-CARBOXYLATE, D-AMINO ACID OXIDASE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Mizutani, H, Miyahara, I, Hirotsu, K, Nishina, Y, Shiga, K, Setoyama, C, Miura, R.
Deposit date:2000-04-20
Release date:2000-10-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Three-dimensional structure of the purple intermediate of porcine kidney D-amino acid oxidase. Optimization of the oxidative half-reaction through alignment of the product with reduced flavin.
J.Biochem.(Tokyo), 128, 2000
1V8C
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BU of 1v8c by Molmil
Crystal Structure of MoaD related protein from Thermus thermophilus HB8
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MoaD related protein
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-05
Release date:2004-01-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of MoaD related protein from Thermus thermophilus HB8
To be Published
1VE9
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BU of 1ve9 by Molmil
Porcine kidney D-amino acid oxidase
Descriptor: BENZOIC ACID, D-amino acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Mizutani, H, Miyahara, I, Hirotsu, K, Nishina, Y, Shiga, K, Setoyama, C, Miura, R.
Deposit date:2004-03-29
Release date:2004-04-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Three-dimensional structure of porcine kidney D-amino acid oxidase at 3.0 A resolution.
J.Biochem., 120, 1996
1VBI
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BU of 1vbi by Molmil
Crystal structure of type 2 malate/lactate dehydrogenase from thermus thermophilus HB8
Descriptor: 1,2-ETHANEDIOL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION, ...
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-27
Release date:2005-04-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of type 2 malate/lactate dehydrogenase from thermus thermophilus HB8
To be Published
1V6S
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BU of 1v6s by Molmil
Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8
Descriptor: GLYCEROL, Phosphoglycerate kinase, SODIUM ION
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-12-04
Release date:2003-12-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8
To be Published
1WY2
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BU of 1wy2 by Molmil
Crystal Structure of the Prolidase from Pyrococcus horikoshii OT3
Descriptor: CACODYLATE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-04
Release date:2005-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the Prolidase from Pyrococcus horikoshii OT3
To be Published
1WZO
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BU of 1wzo by Molmil
Crystal Structure of the HpcE from Thermus Thermophilus HB8
Descriptor: GLYCEROL, HpcE, SODIUM ION, ...
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-03-08
Release date:2006-02-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of the HpcE from Thermus Thermophilus HB8
To be Published
1WY1
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BU of 1wy1 by Molmil
Crystal Structure of the PH0671 protein from Pyrococcus horikoshii OT3
Descriptor: MAGNESIUM ION, hypothetical protein PH0671
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-04
Release date:2005-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the PH0671 protein from Pyrococcus horikoshii OT3
To be Published
1WZN
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BU of 1wzn by Molmil
Crystal Structure of the SAM-dependent methyltransferase from Pyrococcus horikoshii OT3
Descriptor: MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, SAM-dependent methyltransferase, ...
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-03-08
Release date:2006-03-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of the SAM-dependent methyltransferase from Pyrococcus horikoshii OT3
To be Published
2EQ5
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BU of 2eq5 by Molmil
Crystal structure of hydantoin racemase from Pyrococcus horikoshii OT3
Descriptor: 228aa long hypothetical hydantoin racemase
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2007-10-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of hydantoin racemase from Pyrococcus horikoshii OT3
To be Published
1X0A
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BU of 1x0a by Molmil
Crystal Structure of type II malate/lactate dehydrogenase from thermus thermophilus HB8
Descriptor: FORMIC ACID, SODIUM ION, malate/L-lactate dehydrogenase family protein
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-03-16
Release date:2006-03-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of type II malate/lactate dehydrogenase from thermus thermophilus HB8
To be Published
1X3L
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BU of 1x3l by Molmil
Crystal structure of the PH0495 protein from pyrococccus horikoshii OT3
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, hypothetical protein PH0495
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-09
Release date:2006-05-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the PH0495 protein from pyrococccus horikoshii OT3
To be Published
1X3O
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BU of 1x3o by Molmil
Crystal structure of the acyl carrier protein from thermus thermophilus HB8
Descriptor: acyl carrier protein
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-10
Release date:2006-05-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of the acyl carrier protein from thermus thermophilus HB8
To be Published
2EKY
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BU of 2eky by Molmil
Crystal Structure of hypothetical protein MJ1052 from Methanocaldococcus jannaschii (Form 1)
Descriptor: UPF0045 protein MJ1052
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-26
Release date:2007-10-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of hypothetical protein MJ1052 from Methanocaldococcus jannaschii
To be Published
1V6T
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BU of 1v6t by Molmil
Crystal Structure of Lactam Utilization Protein from Pyrococcus horikoshii Ot3
Descriptor: Hypothetical UPF0271 protein PH0986
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-12-04
Release date:2004-12-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of Lactam Utilization Protein from Pyrococcus horikoshii Ot3
To be Published
2EGL
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BU of 2egl by Molmil
Crystal structure of Glu171 to Lys mutant of Diphthine synthase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Mizutani, H, Matsuura, Y, Krishna Swamy, B.S, Simanshu, D.K, Murthy, M.R.N, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-01
Release date:2007-09-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
To be Published
2EHL
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BU of 2ehl by Molmil
Crystal structure of Thr146 to Arg mutant of Diphthine synthase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Mizutani, H, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-07
Release date:2007-09-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
To be Published
2E7R
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BU of 2e7r by Molmil
Crystal structure of Glu54 to Arg mutant of Diphthine synthase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Mizutani, H, Matsuura, Y, Krishna Swamy, B.S, Simanshu, D.K, Murthy, M.R.N, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-12
Release date:2007-07-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
To be Published
2DEC
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BU of 2dec by Molmil
Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3
Descriptor: 1,2-ETHANEDIOL, 325aa long hypothetical protein, SODIUM ION
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-02-10
Release date:2006-08-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3
To be Published
2DF8
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BU of 2df8 by Molmil
Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with beta-D-Fructopyranose-1-phosphate
Descriptor: 1,2-ETHANEDIOL, 1-O-phosphono-beta-D-fructopyranose, 325aa long hypothetical protein
Authors:Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-02-27
Release date:2006-08-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3
To be Published
2Z6R
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Crystal structure of Lys49 to Arg mutant of Diphthine synthase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Mizutani, H, Matsuura, Y, Krishna Swamy, B.S, Simanshu, D.K, Murthy, M.R.N, Kunishima, N.
Deposit date:2007-08-08
Release date:2007-08-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
To be Published

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