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PDB: 326 results

6CON
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BU of 6con by Molmil
Crystal structure of Mycobacterium tuberculosis IpdAB
Descriptor: CoA-transferase subunit alpha, CoA-transferase subunit beta
Authors:Crowe, A.M, Workman, S.D, Watanabe, N, Worrall, L.J, Strynadka, N.C.J, Eltis, L.D.
Deposit date:2018-03-12
Release date:2018-03-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:IpdAB, a virulence factor inMycobacterium tuberculosis, is a cholesterol ring-cleaving hydrolase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6CO6
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BU of 6co6 by Molmil
Crystal structure of Rhodococcus jostii RHA1 IpdAB
Descriptor: GLYCEROL, Probable CoA-transferase alpha subunit, Probable CoA-transferase beta subunit, ...
Authors:Crowe, A.M, Workman, S.D, Watanabe, N, Worrall, L.J, Strynadka, N.C.J, Eltis, L.D.
Deposit date:2018-03-12
Release date:2018-03-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:IpdAB, a virulence factor inMycobacterium tuberculosis, is a cholesterol ring-cleaving hydrolase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3WVG
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BU of 3wvg by Molmil
Time-Resolved Crystal Structure of HindIII with 0sec soaking
Descriptor: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), GLYCEROL, SODIUM ION, ...
Authors:Kawamura, T, Kobayashi, T, Watanabe, N.
Deposit date:2014-05-21
Release date:2015-04-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Acta Crystallogr.,Sect.D, 71, 2015
3WVK
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BU of 3wvk by Molmil
Time-Resolved Crystal Structure of HindIII with 230sec soaking
Descriptor: DNA (5'-D(*GP*CP*CP*A)-3'), DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3'), ...
Authors:Kawamura, T, Kobayashi, T, Watanabe, N.
Deposit date:2014-05-22
Release date:2015-04-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Acta Crystallogr.,Sect.D, 71, 2015
3WZY
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BU of 3wzy by Molmil
S266A mutant 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 580MPa - complex with IPM and Mg
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, MAGNESIUM ION
Authors:Nagae, T, Watanabe, N.
Deposit date:2014-10-08
Release date:2015-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Pressure Adaptation of 3-Isopropylmalate Dehydrogenase from the Extremely Piezophilic Bacterium Shewanella benthica is Attributed to just One Amino Acid Substitution
To be Published
3WZW
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BU of 3wzw by Molmil
3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 580MPa - complex with IPM and Mg
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, MAGNESIUM ION
Authors:Nagae, T, Watanabe, N.
Deposit date:2014-10-08
Release date:2015-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Pressure Adaptation of 3-Isopropylmalate Dehydrogenase from the Extremely Piezophilic Bacterium Shewanella benthica is Attributed to just One Amino Acid Substitution
To be Published
3WZV
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BU of 3wzv by Molmil
3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 0.1MPa - complex with IPM and Mg
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, MAGNESIUM ION
Authors:Nagae, T, Watanabe, N.
Deposit date:2014-10-07
Release date:2015-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Pressure Adaptation of 3-Isopropylmalate Dehydrogenase from the Extremely Piezophilic Bacterium Shewanella benthica is Attributed to just One Amino Acid Substitution
To be Published
3WZX
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BU of 3wzx by Molmil
S266A mutant 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 0.1MPa - complex with IPM and Mg
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, MAGNESIUM ION
Authors:Nagae, T, Watanabe, N.
Deposit date:2014-10-08
Release date:2015-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Pressure Adaptation of 3-Isopropylmalate Dehydrogenase from the Extremely Piezophilic Bacterium Shewanella benthica is Attributed to just One Amino Acid Substitution
To be Published
3WOK
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BU of 3wok by Molmil
Crystal structure of the DAP BII (Space)
Descriptor: GLYCEROL, ZINC ION, dipeptidyl aminopeptidase BII
Authors:Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
3WOJ
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BU of 3woj by Molmil
Crystal structure of the DAP BII
Descriptor: GLYCEROL, ZINC ION, dipeptidyl aminopeptidase BII
Authors:Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N.
Deposit date:2013-12-29
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:S46 peptidases are the first exopeptidases to be members of clan PA
SCI REP, 4, 2014
2M2R
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BU of 2m2r by Molmil
Solution structure of MCh-2: A novel inhibitor cystine knot peptide from Momordica charantia
Descriptor: Inhibitor cystine knot peptide MCh-2
Authors:He, W, Chan, L, Clark, R.J, Tang, J, Zeng, G, Franco, O.L, Cantacessi, C, Craik, D.J, Daly, N.L, Tan, N.
Deposit date:2013-01-01
Release date:2013-11-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Novel Inhibitor Cystine Knot Peptides from Momordica charantia.
Plos One, 8, 2013
2M2Q
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BU of 2m2q by Molmil
Solution structure of MCh-1: A novel inhibitor cystine knot peptide from Momordica charantia
Descriptor: Inhibitor cystine knot peptide MCh-1
Authors:He, W, Chan, L, Clark, R.J, Tang, J, Zeng, G, Franco, O.L, Cantacessi, C, Craik, D.J, Daly, N.L, Tan, N.
Deposit date:2013-01-01
Release date:2013-11-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Novel Inhibitor Cystine Knot Peptides from Momordica charantia.
Plos One, 8, 2013
8W01
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BU of 8w01 by Molmil
Crystal structure of DUF1735 domain-containing protein (GH18-like) from Bacteroides faecium at 2.7 A resolution (Space group C2)
Descriptor: DUF1735 domain-containing protein
Authors:Sastre, D.E, Navarro, M.V.A.S, Sultana, N, Sundberg, E.J.
Deposit date:2024-02-13
Release date:2024-05-29
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
8VVA
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BU of 8vva by Molmil
Structure of DUF1480 domain-containing protein from Klebsiella pneumoniae subsp. pneumoniae SA1
Descriptor: DUF1480 domain-containing protein, YebV family
Authors:Semper, C, Savchenko, A, Watanabe, N, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2024-01-30
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of DUF1480 domain-containing protein from Klebsiella pneumoniae subsp. pneumoniae SA1
To Be Published
8W04
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BU of 8w04 by Molmil
Crystal structure of DUF1735-domain containing protein (GH18-like) from Bacteroides faecium at 2.9 A resolution (Space group P21)
Descriptor: DUF1735 domain-containing protein
Authors:Sastre, D.E, Navarro, M.V.A.S, Sultana, N, Sundberg, E.J.
Deposit date:2024-02-13
Release date:2024-05-29
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
8VS5
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BU of 8vs5 by Molmil
Structure of catalytic domain of telomere resolvase, ResT, from Borrelia garinii
Descriptor: Telomere resolvase ResT
Authors:Semper, C, Savchenko, A, Watanabe, N, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2024-01-23
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.796 Å)
Cite:Structure analysis of the telomere resolvase from the Lyme disease spirochete Borrelia garinii reveals functional divergence of its C-terminal domain.
Nucleic Acids Res., 2024
8VJ1
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BU of 8vj1 by Molmil
Structure of C-terminal domain of telomere resolvase, ResT, from Borrelia garinii
Descriptor: Telomere resolvase ResT
Authors:Semper, C, Savchenko, A, Watanabe, N, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2024-01-05
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structure analysis of the telomere resolvase from the Lyme disease spirochete Borrelia garinii reveals functional divergence of its C-terminal domain.
Nucleic Acids Res., 2024
2ZDS
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BU of 2zds by Molmil
Crystal Structure of SCO6571 from Streptomyces coelicolor A3(2)
Descriptor: Putative DNA-binding protein
Authors:Begum, P, Gao, Y.G, Sakai, N, Yao, M, Watanabe, N, Tanaka, I.
Deposit date:2007-11-27
Release date:2008-12-02
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of SCO6571 from Streptomyces coelicolor A3(2).
Protein Pept.Lett., 15, 2008
2Z2E
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BU of 2z2e by Molmil
Crystal Structure of Canine Milk Lysozyme Stabilized against Non-enzymatic Deamidation
Descriptor: Lysozyme C, milk isozyme, SULFATE ION
Authors:Nonaka, Y, Akieda, D, Watanabe, N, Tanaka, I, Kamiya, M, Aizawa, T, Nitta, K, Demura, M, Kawano, K.
Deposit date:2007-05-21
Release date:2007-11-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Spontaneous asparaginyl deamidation of canine milk lysozyme under mild conditions
Proteins, 72, 2008
2DG8
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BU of 2dg8 by Molmil
Crystal structure of the putative trasncriptional regulator SCO7518 from Streptomyces coelicolor A3(2)
Descriptor: putative tetR-family transcriptional regulatory protein
Authors:Hayashi, T, Watanabe, N, Sakai, N, Tamura, T, Yao, M, Tanaka, I.
Deposit date:2006-03-08
Release date:2007-03-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal structure of the putative transcriptional regulator SCO7518 from Streptomyces coelicolor A3(2)
To be Published
2Z2F
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BU of 2z2f by Molmil
X-ray Crystal Structure of Bovine Stomach Lysozyme
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Lysozyme C-2, SODIUM ION
Authors:Akieda, D, Nonaka, Y, Watanabe, N, Tanaka, I, Kamiya, M, Aizawa, T, Nitta, K, Demura, M, Kawano, K.
Deposit date:2007-05-21
Release date:2008-05-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Stability of Bovine Stomach Lysozyme in Acidic Condition
To be Published
2ZOY
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BU of 2zoy by Molmil
The multi-drug binding transcriptional repressor CgmR (CGL2612 protein) from C.glutamicum
Descriptor: GLYCEROL, Transcriptional regulator
Authors:Itou, H, Yao, M, Watanabe, N, Tanaka, I.
Deposit date:2008-06-20
Release date:2008-07-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The CGL2612 protein from Corynebacterium glutamicum is a drug resistance-related transcriptional repressor: structural and functional analysis of a newly identified transcription factor from genomic DNA analysis
J.Biol.Chem., 280, 2005
2ZB9
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BU of 2zb9 by Molmil
Crystal structure of TetR family transcription regulator SCO0332
Descriptor: Putative transcriptional regulator
Authors:Okada, U, Kondo, K, Watanabe, N, Yao, M, Tanaka, I.
Deposit date:2007-10-16
Release date:2008-01-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and functional analysis of the TetR-family transcriptional regulator SCO0332 from Streptomyces coelicolor
ACTA CRYSTALLOGR.,SECT.D, 64, 2008
2ZU9
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BU of 2zu9 by Molmil
Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii
Descriptor: COBALT (II) ION, GUANOSINE-5'-DIPHOSPHATE, Mannosyl-3-phosphoglycerate synthase
Authors:Kawamura, T, Watanabe, N, Tanaka, I.
Deposit date:2008-10-14
Release date:2009-10-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii
To be Published
2ZU8
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BU of 2zu8 by Molmil
Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii
Descriptor: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, Mannosyl-3-phosphoglycerate synthase
Authors:Kawamura, T, Watanabe, N, Tanaka, I.
Deposit date:2008-10-14
Release date:2009-10-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of mannosyl-3-phosphoglycerate synthase from Pyrococcus horikoshii
To be Published

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