7DKC
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![BU of 7dkc by Molmil](/molmil-images/mine/7dkc) | Stenotrophomonas maltophilia DPP7 in complex with Tyr-Tyr | Descriptor: | Dipeptidyl-peptidase, GLYCEROL, TYROSINE | Authors: | Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. | Deposit date: | 2020-11-23 | Release date: | 2021-11-03 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.86 Å) | Cite: | Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
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7DKE
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![BU of 7dke by Molmil](/molmil-images/mine/7dke) | Stenotrophomonas maltophilia DPP7 in complex with Phe-Tyr | Descriptor: | Dipeptidyl-peptidase, GLYCEROL, PHENYLALANINE, ... | Authors: | Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. | Deposit date: | 2020-11-23 | Release date: | 2021-11-03 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.91 Å) | Cite: | Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
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7DKB
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![BU of 7dkb by Molmil](/molmil-images/mine/7dkb) | Stenotrophomonas maltophilia DPP7 in complex with Val-Tyr | Descriptor: | Dipeptidyl-peptidase, TYROSINE, VALINE | Authors: | Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. | Deposit date: | 2020-11-23 | Release date: | 2021-11-03 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.03 Å) | Cite: | Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
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2D35
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![BU of 2d35 by Molmil](/molmil-images/mine/2d35) | Solution structure of Cell Division Reactivation Factor, CedA | Descriptor: | Cell division activator cedA | Authors: | Abe, Y, Watanabe, N, Matsuda, Y, Yoshida, Y, Katayama, T, Ueda, T. | Deposit date: | 2005-09-26 | Release date: | 2006-12-12 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Structural Analysis and Molecular Interaction of Cell Division Reactivation Factor, CedA from Escherichia coli To be Published
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3AUA
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![BU of 3aua by Molmil](/molmil-images/mine/3aua) | Crystal structure of the quaternary complex-2 of an isomerase | Descriptor: | 1-deoxy-D-xylulose 5-phosphate reductoisomerase, 3-[ethanoyl(hydroxy)amino]propylphosphonic acid, CALCIUM ION, ... | Authors: | Umeda, T, Tanaka, N, Kusakabe, Y, Nakanishi, M, Kitade, Y, Nakamura, K.T. | Deposit date: | 2011-02-01 | Release date: | 2011-08-10 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum Sci Rep, 1, 2011
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3AU8
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![BU of 3au8 by Molmil](/molmil-images/mine/3au8) | Crystal structure of the ternary complex of an isomerase | Descriptor: | 1-deoxy-D-xylulose 5-phosphate reductoisomerase, MANGANESE (II) ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Authors: | Umeda, T, Tanaka, N, Kusakabe, Y, Nakanishi, M, Kitade, Y, Nakamura, K.T. | Deposit date: | 2011-02-01 | Release date: | 2011-08-10 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.86 Å) | Cite: | Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum Sci Rep, 1, 2011
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2RQZ
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![BU of 2rqz by Molmil](/molmil-images/mine/2rqz) | Structure of sugar modified epidermal growth factor-like repeat 12 of mouse Notch-1 receptor | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose, Neurogenic locus notch homolog protein 1 | Authors: | Shimizu, K, Fujitani, N, Hosoguchi, K, Nishimura, S. | Deposit date: | 2010-02-26 | Release date: | 2010-10-13 | Last modified: | 2020-07-29 | Method: | SOLUTION NMR | Cite: | Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor J.Am.Chem.Soc., 132, 2010
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2RNG
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![BU of 2rng by Molmil](/molmil-images/mine/2rng) | Solution structure of big defensin | Descriptor: | Big defensin | Authors: | Kouno, T, Fujitani, N, Osaki, T, Kawabata, S, Nishimura, S, Mizuguchi, M, Aizawa, T, Demura, M, Nitta, K, Kawano, K. | Deposit date: | 2007-12-27 | Release date: | 2008-10-14 | Last modified: | 2023-06-14 | Method: | SOLUTION NMR | Cite: | A novel beta-defensin structure: a potential strategy of big defensin for overcoming resistance by Gram-positive bacteria Biochemistry, 47, 2008
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2RR0
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![BU of 2rr0 by Molmil](/molmil-images/mine/2rr0) | Structure of epidermal growth factor-like repeat 12 of mouse Notch-1 receptor | Descriptor: | Neurogenic locus notch homolog protein 1 | Authors: | Hosoguchi, K, Shimizu, K, Fujitani, N, Nishimura, S. | Deposit date: | 2010-02-26 | Release date: | 2010-10-13 | Last modified: | 2011-07-13 | Method: | SOLUTION NMR | Cite: | Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor J.Am.Chem.Soc., 132, 2010
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5AXD
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![BU of 5axd by Molmil](/molmil-images/mine/5axd) | |
5AXA
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![BU of 5axa by Molmil](/molmil-images/mine/5axa) | |
5AXB
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![BU of 5axb by Molmil](/molmil-images/mine/5axb) | Crystal structure of mouse SAHH complexed with noraristeromycin | Descriptor: | (1S,2R,3S,4R)-4-(6-aminopurin-9-yl)cyclopentane-1,2,3-triol, Adenosylhomocysteinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | Authors: | Kusakabe, Y, Ishihara, M, Tanaka, N. | Deposit date: | 2015-07-24 | Release date: | 2016-07-27 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Crystal structure of mouse SAHH complexed with noraristeromycin To Be Published
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2RR2
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![BU of 2rr2 by Molmil](/molmil-images/mine/2rr2) | Structure of O-fucosylated epidermal growth factor-like repeat 12 of mouse Notch-1 receptor | Descriptor: | Neurogenic locus notch homolog protein 1, alpha-L-fucopyranose | Authors: | Hosoguchi, K, Shimizu, K, Fujitani, N, Nishimura, S. | Deposit date: | 2010-02-26 | Release date: | 2010-10-13 | Last modified: | 2020-07-29 | Method: | SOLUTION NMR | Cite: | Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor J.Am.Chem.Soc., 132, 2010
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2D2X
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![BU of 2d2x by Molmil](/molmil-images/mine/2d2x) | Crystal structure of 2-deoxy-scyllo-inosose synthase | Descriptor: | 2-deoxy-scyllo-inosose synthase, COBALT (II) ION, GLYCEROL, ... | Authors: | Nango, E, Kumasaka, T, Tanaka, N, Kakinuma, K, Eguchi, T. | Deposit date: | 2005-09-20 | Release date: | 2006-10-03 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structure of 2-deoxy-scyllo-inosose synthase, a key enzyme in the biosynthesis of 2-deoxystreptamine-containing aminoglycoside antibiotics, in complex with a mechanism-based inhibitor and NAD+ Proteins, 70, 2008
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6CO6
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![BU of 6co6 by Molmil](/molmil-images/mine/6co6) | Crystal structure of Rhodococcus jostii RHA1 IpdAB | Descriptor: | GLYCEROL, Probable CoA-transferase alpha subunit, Probable CoA-transferase beta subunit, ... | Authors: | Crowe, A.M, Workman, S.D, Watanabe, N, Worrall, L.J, Strynadka, N.C.J, Eltis, L.D. | Deposit date: | 2018-03-12 | Release date: | 2018-03-28 | Last modified: | 2023-10-04 | Method: | X-RAY DIFFRACTION (1.701 Å) | Cite: | IpdAB, a virulence factor inMycobacterium tuberculosis, is a cholesterol ring-cleaving hydrolase. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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6JTB
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![BU of 6jtb by Molmil](/molmil-images/mine/6jtb) | Crystal structure of dipeptidyl peptidase 11 (DPP11) with citrate from Porphyromonas gingivalis (Space) | Descriptor: | Asp/Glu-specific dipeptidyl-peptidase, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ... | Authors: | Sakamoto, Y, Suzuki, Y, Iizuka, I, Roppongi, S, Kushibiki, C, Nakamura, A, Ogasawara, W, Tanaka, N. | Deposit date: | 2019-04-10 | Release date: | 2019-10-02 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Fragment-based discovery of the first nonpeptidyl inhibitor of an S46 family peptidase. Sci Rep, 9, 2019
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6JTC
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![BU of 6jtc by Molmil](/molmil-images/mine/6jtc) | Crystal structure of dipeptidyl peptidase 11 (DPP11) with SH-5 from Porphyromonas gingivalis (Space) | Descriptor: | 2-(2-azanylethylamino)-5-nitro-benzoic acid, Asp/Glu-specific dipeptidyl-peptidase, GLYCEROL | Authors: | Sakamoto, Y, Suzuki, Y, Iizuka, I, Roppongi, S, Kushibiki, C, Nakamura, A, Ogasawara, W, Tanaka, N. | Deposit date: | 2019-04-10 | Release date: | 2019-10-02 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.39 Å) | Cite: | Fragment-based discovery of the first nonpeptidyl inhibitor of an S46 family peptidase. Sci Rep, 9, 2019
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1QTR
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![BU of 1qtr by Molmil](/molmil-images/mine/1qtr) | CRYSTAL STRUCTURE ANALYSIS OF THE PROLYL AMINOPEPTIDASE FROM SERRATIA MARCESCENS | Descriptor: | PROLYL AMINOPEPTIDASE | Authors: | Yoshimoto, T, Kabashima, T, Uchikawa, K, Inoue, T, Tanaka, N. | Deposit date: | 1999-06-28 | Release date: | 1999-07-07 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.32 Å) | Cite: | Crystal structure of prolyl aminopeptidase from Serratia marcescens. J.Biochem.(Tokyo), 126, 1999
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6CO9
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![BU of 6co9 by Molmil](/molmil-images/mine/6co9) | Crystal structure of Rhodococcus jostii RHA1 IpdAB COCHEA-COA complex | Descriptor: | Probable CoA-transferase alpha subunit, Probable CoA-transferase beta subunit, S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (5R,10R)-7-hydroxy-10-methyl-2-oxo-1-oxaspiro[4.5]dec-6-ene-6-carbothioate (non-preferred name), ... | Authors: | Crowe, A.M, Workman, S.D, Watanabe, N, Worrall, L.J, Strynadka, N.C.J, Eltis, L.D. | Deposit date: | 2018-03-12 | Release date: | 2018-03-28 | Last modified: | 2023-10-04 | Method: | X-RAY DIFFRACTION (1.602 Å) | Cite: | IpdAB, a virulence factor inMycobacterium tuberculosis, is a cholesterol ring-cleaving hydrolase. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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6COJ
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![BU of 6coj by Molmil](/molmil-images/mine/6coj) | Crystal structure of Rhodococcus jostii RHA1 IpdAB E105A COCHEA-COA complex | Descriptor: | Probable CoA-transferase alpha subunit, Probable CoA-transferase beta subunit, S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (5R,10R)-7-hydroxy-10-methyl-2-oxo-1-oxaspiro[4.5]dec-6-ene-6-carbothioate (non-preferred name), ... | Authors: | Crowe, A.M, Workman, S.D, Watanabe, N, Worrall, L.J, Strynadka, N.C.J, Eltis, L.D. | Deposit date: | 2018-03-12 | Release date: | 2018-03-28 | Last modified: | 2023-10-04 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | IpdAB, a virulence factor inMycobacterium tuberculosis, is a cholesterol ring-cleaving hydrolase. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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6CON
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![BU of 6con by Molmil](/molmil-images/mine/6con) | Crystal structure of Mycobacterium tuberculosis IpdAB | Descriptor: | CoA-transferase subunit alpha, CoA-transferase subunit beta | Authors: | Crowe, A.M, Workman, S.D, Watanabe, N, Worrall, L.J, Strynadka, N.C.J, Eltis, L.D. | Deposit date: | 2018-03-12 | Release date: | 2018-03-28 | Last modified: | 2023-10-04 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | IpdAB, a virulence factor inMycobacterium tuberculosis, is a cholesterol ring-cleaving hydrolase. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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3U0V
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![BU of 3u0v by Molmil](/molmil-images/mine/3u0v) | Crystal Structure Analysis of human LYPLAL1 | Descriptor: | Lysophospholipase-like protein 1 | Authors: | Burger, M, Zimmermann, T.J, Kondoh, Y, Stege, P, Watanabe, N, Osada, H, Waldmann, H, Vetter, I.R. | Deposit date: | 2011-09-29 | Release date: | 2011-11-16 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.72 Å) | Cite: | Crystal structure of the predicted phospholipase LYPLAL1 reveals unexpected functional plasticity despite close relationship to acyl protein thioesterases J.Lipid Res., 53, 2012
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3VL6
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![BU of 3vl6 by Molmil](/molmil-images/mine/3vl6) | |
3VKZ
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![BU of 3vkz by Molmil](/molmil-images/mine/3vkz) | |
3VL4
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![BU of 3vl4 by Molmil](/molmil-images/mine/3vl4) | |