7DKD
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![BU of 7dkd by Molmil](/molmil-images/mine/7dkd) | Stenotrophomonas maltophilia DPP7 in complex with Asn-Tyr | Descriptor: | ASPARAGINE, Dipeptidyl-peptidase, GLYCEROL, ... | Authors: | Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. | Deposit date: | 2020-11-23 | Release date: | 2021-11-03 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.92 Å) | Cite: | Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
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7DKC
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![BU of 7dkc by Molmil](/molmil-images/mine/7dkc) | Stenotrophomonas maltophilia DPP7 in complex with Tyr-Tyr | Descriptor: | Dipeptidyl-peptidase, GLYCEROL, TYROSINE | Authors: | Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. | Deposit date: | 2020-11-23 | Release date: | 2021-11-03 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.86 Å) | Cite: | Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
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7DKE
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![BU of 7dke by Molmil](/molmil-images/mine/7dke) | Stenotrophomonas maltophilia DPP7 in complex with Phe-Tyr | Descriptor: | Dipeptidyl-peptidase, GLYCEROL, PHENYLALANINE, ... | Authors: | Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. | Deposit date: | 2020-11-23 | Release date: | 2021-11-03 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.91 Å) | Cite: | Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
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7DKB
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![BU of 7dkb by Molmil](/molmil-images/mine/7dkb) | Stenotrophomonas maltophilia DPP7 in complex with Val-Tyr | Descriptor: | Dipeptidyl-peptidase, TYROSINE, VALINE | Authors: | Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. | Deposit date: | 2020-11-23 | Release date: | 2021-11-03 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.03 Å) | Cite: | Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
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2RR2
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![BU of 2rr2 by Molmil](/molmil-images/mine/2rr2) | Structure of O-fucosylated epidermal growth factor-like repeat 12 of mouse Notch-1 receptor | Descriptor: | Neurogenic locus notch homolog protein 1, alpha-L-fucopyranose | Authors: | Hosoguchi, K, Shimizu, K, Fujitani, N, Nishimura, S. | Deposit date: | 2010-02-26 | Release date: | 2010-10-13 | Last modified: | 2020-07-29 | Method: | SOLUTION NMR | Cite: | Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor J.Am.Chem.Soc., 132, 2010
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2P6V
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![BU of 2p6v by Molmil](/molmil-images/mine/2p6v) | Structure of TAFH domain of the human TAF4 subunit of TFIID | Descriptor: | SULFATE ION, Transcription initiation factor TFIID subunit 4 | Authors: | Wang, X, Truckses, D.M, Takada, S, Matsumura, T, Tanese, N, Jacobson, R.H. | Deposit date: | 2007-03-19 | Release date: | 2007-05-15 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Conserved region I of human coactivator TAF4 binds to a short hydrophobic motif present in transcriptional regulators. Proc.Natl.Acad.Sci.Usa, 104, 2007
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5B18
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![BU of 5b18 by Molmil](/molmil-images/mine/5b18) | Crystal Structure of a Darunavir Resistant HIV-1 Protease | Descriptor: | ACETATE ION, CHLORIDE ION, Protease | Authors: | Suzuki, K, Ode, H, Nakashima, M, Sugiura, W, Watanabe, N, Suzuki, A, Iwatani, Y. | Deposit date: | 2015-11-30 | Release date: | 2016-04-13 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Unique Flap Conformation in an HIV-1 Protease with High-Level Darunavir Resistance Front Microbiol, 7, 2016
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2RR0
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![BU of 2rr0 by Molmil](/molmil-images/mine/2rr0) | Structure of epidermal growth factor-like repeat 12 of mouse Notch-1 receptor | Descriptor: | Neurogenic locus notch homolog protein 1 | Authors: | Hosoguchi, K, Shimizu, K, Fujitani, N, Nishimura, S. | Deposit date: | 2010-02-26 | Release date: | 2010-10-13 | Last modified: | 2011-07-13 | Method: | SOLUTION NMR | Cite: | Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor J.Am.Chem.Soc., 132, 2010
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2RNG
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![BU of 2rng by Molmil](/molmil-images/mine/2rng) | Solution structure of big defensin | Descriptor: | Big defensin | Authors: | Kouno, T, Fujitani, N, Osaki, T, Kawabata, S, Nishimura, S, Mizuguchi, M, Aizawa, T, Demura, M, Nitta, K, Kawano, K. | Deposit date: | 2007-12-27 | Release date: | 2008-10-14 | Last modified: | 2023-06-14 | Method: | SOLUTION NMR | Cite: | A novel beta-defensin structure: a potential strategy of big defensin for overcoming resistance by Gram-positive bacteria Biochemistry, 47, 2008
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2RQZ
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![BU of 2rqz by Molmil](/molmil-images/mine/2rqz) | Structure of sugar modified epidermal growth factor-like repeat 12 of mouse Notch-1 receptor | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose, Neurogenic locus notch homolog protein 1 | Authors: | Shimizu, K, Fujitani, N, Hosoguchi, K, Nishimura, S. | Deposit date: | 2010-02-26 | Release date: | 2010-10-13 | Last modified: | 2020-07-29 | Method: | SOLUTION NMR | Cite: | Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor J.Am.Chem.Soc., 132, 2010
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2D35
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![BU of 2d35 by Molmil](/molmil-images/mine/2d35) | Solution structure of Cell Division Reactivation Factor, CedA | Descriptor: | Cell division activator cedA | Authors: | Abe, Y, Watanabe, N, Matsuda, Y, Yoshida, Y, Katayama, T, Ueda, T. | Deposit date: | 2005-09-26 | Release date: | 2006-12-12 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Structural Analysis and Molecular Interaction of Cell Division Reactivation Factor, CedA from Escherichia coli To be Published
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3U0V
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![BU of 3u0v by Molmil](/molmil-images/mine/3u0v) | Crystal Structure Analysis of human LYPLAL1 | Descriptor: | Lysophospholipase-like protein 1 | Authors: | Burger, M, Zimmermann, T.J, Kondoh, Y, Stege, P, Watanabe, N, Osada, H, Waldmann, H, Vetter, I.R. | Deposit date: | 2011-09-29 | Release date: | 2011-11-16 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.72 Å) | Cite: | Crystal structure of the predicted phospholipase LYPLAL1 reveals unexpected functional plasticity despite close relationship to acyl protein thioesterases J.Lipid Res., 53, 2012
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2DCJ
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![BU of 2dcj by Molmil](/molmil-images/mine/2dcj) | A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1 | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, GLYCEROL, ... | Authors: | Ihsanawati, Tanaka, N, Nakamura, S, Kumasaka, T. | Deposit date: | 2006-01-07 | Release date: | 2007-03-20 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.24 Å) | Cite: | A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1 To be Published
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2DCK
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![BU of 2dck by Molmil](/molmil-images/mine/2dck) | A tetragonal-lattice structure of alkaliphilic XynJ from Bacillus sp. 41M-1 | Descriptor: | CALCIUM ION, GLYCEROL, xylanase J | Authors: | Fibriansah, G, Ihsanawati, Tanaka, N, Nakamura, S, Kumasaka, T. | Deposit date: | 2006-01-07 | Release date: | 2007-03-20 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1 To be Published
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6JTB
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![BU of 6jtb by Molmil](/molmil-images/mine/6jtb) | Crystal structure of dipeptidyl peptidase 11 (DPP11) with citrate from Porphyromonas gingivalis (Space) | Descriptor: | Asp/Glu-specific dipeptidyl-peptidase, CITRIC ACID, DI(HYDROXYETHYL)ETHER, ... | Authors: | Sakamoto, Y, Suzuki, Y, Iizuka, I, Roppongi, S, Kushibiki, C, Nakamura, A, Ogasawara, W, Tanaka, N. | Deposit date: | 2019-04-10 | Release date: | 2019-10-02 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Fragment-based discovery of the first nonpeptidyl inhibitor of an S46 family peptidase. Sci Rep, 9, 2019
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1BQF
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![BU of 1bqf by Molmil](/molmil-images/mine/1bqf) | GROWTH-BLOCKING PEPTIDE (GBP) FROM PSEUDALETIA SEPARATA | Descriptor: | PROTEIN (GROWTH-BLOCKING PEPTIDE) | Authors: | Aizawa, T, Fujitani, N, Hayakawa, Y, Ohnishi, A, Ohkubo, T, Kwano, K, Hikichi, K, Nitta, K. | Deposit date: | 1998-08-09 | Release date: | 1998-12-09 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Solution structure of an insect growth factor, growth-blocking peptide. J.Biol.Chem., 274, 1999
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1CCR
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![BU of 1ccr by Molmil](/molmil-images/mine/1ccr) | STRUCTURE OF RICE FERRICYTOCHROME C AT 2.0 ANGSTROMS RESOLUTION | Descriptor: | CYTOCHROME C, HEME C | Authors: | Ochi, H, Hata, Y, Tanaka, N, Kakudo, M, Sakurai, T, Aihara, S, Morita, Y. | Deposit date: | 1983-03-14 | Release date: | 1983-04-21 | Last modified: | 2021-03-03 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structure of rice ferricytochrome c at 2.0 A resolution. J.Mol.Biol., 166, 1983
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1QTR
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![BU of 1qtr by Molmil](/molmil-images/mine/1qtr) | CRYSTAL STRUCTURE ANALYSIS OF THE PROLYL AMINOPEPTIDASE FROM SERRATIA MARCESCENS | Descriptor: | PROLYL AMINOPEPTIDASE | Authors: | Yoshimoto, T, Kabashima, T, Uchikawa, K, Inoue, T, Tanaka, N. | Deposit date: | 1999-06-28 | Release date: | 1999-07-07 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.32 Å) | Cite: | Crystal structure of prolyl aminopeptidase from Serratia marcescens. J.Biochem.(Tokyo), 126, 1999
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3VL6
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![BU of 3vl6 by Molmil](/molmil-images/mine/3vl6) | |
3VKZ
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![BU of 3vkz by Molmil](/molmil-images/mine/3vkz) | |
3VL4
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3VP8
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![BU of 3vp8 by Molmil](/molmil-images/mine/3vp8) | Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p | Descriptor: | General transcriptional corepressor TUP1 | Authors: | Matsumura, H, Kusaka, N, Nakamura, T, Tanaka, N, Sagegami, K, Uegaki, K, Inoue, T, Mukai, Y. | Deposit date: | 2012-02-28 | Release date: | 2012-06-13 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.91 Å) | Cite: | Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications J.Biol.Chem., 287, 2012
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3VL3
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3VL2
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3ANX
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![BU of 3anx by Molmil](/molmil-images/mine/3anx) | Crystal structure of triamine/agmatine aminopropyltransferase (SPEE) from thermus thermophilus, complexed with MTA | Descriptor: | 5'-DEOXY-5'-METHYLTHIOADENOSINE, spermidine synthase | Authors: | Ganbe, T, Ohnuma, M, Sato, T, Tanaka, N, Oshima, T, Kumasaka, T. | Deposit date: | 2010-09-14 | Release date: | 2011-04-13 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structures and enzymatic properties of a triamine/agmatine aminopropyltransferase from Thermus thermophilus J.Mol.Biol., 408, 2011
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