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PDB: 321 件

1G12
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ZINC PEPTIDASE FROM GRIFOLA FRONDOSA
分子名称: PEPTIDYL-LYS METALLOENDOPEPTIDASE, ZINC ION, alpha-D-mannopyranose
著者Hori, T, Kumasaka, T, Yamamoto, M, Nonaka, T, Tanaka, N, Hashimoto, Y, Ueki, T, Takio, K.
登録日2000-10-10
公開日2001-03-14
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
1VEC
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Crystal structure of the N-terminal domain of rck/p54, a human DEAD-box protein
分子名称: ATP-dependent RNA helicase p54, L(+)-TARTARIC ACID, ZINC ION
著者Hogetsu, K, Matsui, T, Yukihiro, Y, Tanaka, M, Sato, T, Kumasaka, T, Tanaka, N.
登録日2004-03-29
公開日2004-04-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Structural insight of human DEAD-box protein rck/p54 into its substrate recognition with conformational changes
Genes Cells, 11, 2006
5B18
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Crystal Structure of a Darunavir Resistant HIV-1 Protease
分子名称: ACETATE ION, CHLORIDE ION, Protease
著者Suzuki, K, Ode, H, Nakashima, M, Sugiura, W, Watanabe, N, Suzuki, A, Iwatani, Y.
登録日2015-11-30
公開日2016-04-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Unique Flap Conformation in an HIV-1 Protease with High-Level Darunavir Resistance
Front Microbiol, 7, 2016
1GE6
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ZINC PEPTIDASE FROM GRIFOLA FRONDOSA
分子名称: PEPTIDYL-LYS METALLOENDOPEPTIDASE, ZINC ION, alpha-D-mannopyranose
著者Hori, T, Kumasaka, T, Yamamoto, M, Nonaka, T, Tanaka, N, Hashimoto, Y, Ueki, T, Takio, K.
登録日2000-10-11
公開日2001-03-14
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
1J2T
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Creatininase Mn
分子名称: MANGANESE (II) ION, SULFATE ION, ZINC ION, ...
著者Yoshimoto, T, Tanaka, N, Kanada, N, Inoue, T, Nakajima, Y, Haratake, M, Nakamura, K.T, Xu, Y, Ito, K.
登録日2003-01-11
公開日2004-01-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism
J.Mol.Biol., 337, 2004
1ITK
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Crystal structure of catalase-peroxidase from Haloarcula marismortui
分子名称: CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
著者Yamada, Y, Fujiwara, T, Sato, T, Igarashi, N, Tanaka, N.
登録日2002-01-18
公開日2002-08-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The 2.0 A crystal structure of catalase-peroxidase from Haloarcula marismortui.
Nat.Struct.Biol., 9, 2002
1IPD
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THREE-DIMENSIONAL STRUCTURE OF A HIGHLY THERMOSTABLE ENZYME, 3-ISOPROPYLMALATE DEHYDROGENASE OF THERMUS THERMOPHILUS AT 2.2 ANGSTROMS RESOLUTION
分子名称: 3-ISOPROPYLMALATE DEHYDROGENASE, SULFATE ION
著者Imada, K, Sato, M, Tanaka, N, Katsube, Y, Matsuura, Y, Oshima, T.
登録日1992-01-29
公開日1993-10-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Three-dimensional structure of a highly thermostable enzyme, 3-isopropylmalate dehydrogenase of Thermus thermophilus at 2.2 A resolution.
J.Mol.Biol., 222, 1991
2RR0
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Structure of epidermal growth factor-like repeat 12 of mouse Notch-1 receptor
分子名称: Neurogenic locus notch homolog protein 1
著者Hosoguchi, K, Shimizu, K, Fujitani, N, Nishimura, S.
登録日2010-02-26
公開日2010-10-13
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor
J.Am.Chem.Soc., 132, 2010
2RQZ
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Structure of sugar modified epidermal growth factor-like repeat 12 of mouse Notch-1 receptor
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose, Neurogenic locus notch homolog protein 1
著者Shimizu, K, Fujitani, N, Hosoguchi, K, Nishimura, S.
登録日2010-02-26
公開日2010-10-13
最終更新日2020-07-29
実験手法SOLUTION NMR
主引用文献Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor
J.Am.Chem.Soc., 132, 2010
2RNG
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Solution structure of big defensin
分子名称: Big defensin
著者Kouno, T, Fujitani, N, Osaki, T, Kawabata, S, Nishimura, S, Mizuguchi, M, Aizawa, T, Demura, M, Nitta, K, Kawano, K.
登録日2007-12-27
公開日2008-10-14
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献A novel beta-defensin structure: a potential strategy of big defensin for overcoming resistance by Gram-positive bacteria
Biochemistry, 47, 2008
1UIR
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Crystal Structure of Polyamine Aminopropyltransfease from Thermus thermophilus
分子名称: Polyamine Aminopropyltransferase
著者Ganbe, T, Ohnuma, M, Sato, T, Kumasaka, T, Oshima, T, Tanaka, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-07-18
公開日2003-08-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures and enzymatic properties of a triamine/agmatine aminopropyltransferase from Thermus thermophilus
J.Mol.Biol., 408, 2011
7CAT
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BU of 7cat by Molmil
The NADPH binding site on beef liver catalase
分子名称: CATALASE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTOPORPHYRIN IX CONTAINING FE
著者Murthy, M.R.N, Reid III, T.J, Sicignano, A, Tanaka, N, Fita, I, Rossmann, M.G.
登録日1984-11-15
公開日1985-04-01
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The NADPH binding site on beef liver catalase.
Proc.Natl.Acad.Sci.USA, 82, 1985
1V9I
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Crystal Structure Analysis of the site specific mutant (Q253C) of bovine carbonic anhydrase II
分子名称: Carbonic anhydrase II, ZINC ION
著者Saito, R, Sato, T, Ikai, A, Tanaka, N.
登録日2004-01-26
公開日2004-02-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Crystal Structure Analysis of the site specific mutant (Q253C) of bovine carbonic anhydrase II
To be Published
2JPE
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FHA domain of NIPP1
分子名称: Nuclear inhibitor of protein phosphatase 1
著者Kumeta, H, Ogura, K, Fujioka, Y, Tanuma, N, Kikuchi, K, Inagaki, F.
登録日2007-05-07
公開日2007-05-15
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献The NMR structure of the NIPP1 FHA domain.
J.Biomol.Nmr, 40, 2008
1V9E
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Crystal Structure Analysis of Bovine Carbonic Anhydrase II
分子名称: Carbonic anhydrase II, ZINC ION
著者Saito, R, Sato, T, Ikai, A, Tanaka, N.
登録日2004-01-26
公開日2004-02-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structure of bovine carbonic anhydrase II at 1.95 A resolution.
Acta Crystallogr.,Sect.D, 60, 2004
1WM1
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Crystal Structure of Prolyl Aminopeptidase, Complex with Pro-TBODA
分子名称: (5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)[(2R)-PYRROLIDIN-2-YL]METHANONE, Proline iminopeptidase
著者Nakajima, Y, Inoue, T, Ito, K, Tozaka, T, Hatakeyama, S, Tanaka, N, Nakamura, K.T, Yoshimoto, T.
登録日2004-07-01
公開日2004-07-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Novel inhibitor for prolyl aminopeptidase from Serratia marcescens and studies on the mechanism of substrate recognition of the enzyme using the inhibitor
ARCH.BIOCHEM.BIOPHYS., 416, 2003
1WPR
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Crystal structure of RsbQ inhibited by PMSF
分子名称: GLYCEROL, Sigma factor sigB regulation protein rsbQ, phenylmethanesulfonic acid
著者Kaneko, T, Tanaka, N, Kumasaka, T.
登録日2004-09-11
公開日2005-02-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structures of RsbQ, a stress-response regulator in Bacillus subtilis
Protein Sci., 14, 2005
7DKD
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Stenotrophomonas maltophilia DPP7 in complex with Asn-Tyr
分子名称: ASPARAGINE, Dipeptidyl-peptidase, GLYCEROL, ...
著者Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N.
登録日2020-11-23
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7.
Sci Rep, 11, 2021
7DKC
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Stenotrophomonas maltophilia DPP7 in complex with Tyr-Tyr
分子名称: Dipeptidyl-peptidase, GLYCEROL, TYROSINE
著者Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N.
登録日2020-11-23
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7.
Sci Rep, 11, 2021
7DKE
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Stenotrophomonas maltophilia DPP7 in complex with Phe-Tyr
分子名称: Dipeptidyl-peptidase, GLYCEROL, PHENYLALANINE, ...
著者Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N.
登録日2020-11-23
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7.
Sci Rep, 11, 2021
7DKB
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Stenotrophomonas maltophilia DPP7 in complex with Val-Tyr
分子名称: Dipeptidyl-peptidase, TYROSINE, VALINE
著者Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N.
登録日2020-11-23
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7.
Sci Rep, 11, 2021
1QTR
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CRYSTAL STRUCTURE ANALYSIS OF THE PROLYL AMINOPEPTIDASE FROM SERRATIA MARCESCENS
分子名称: PROLYL AMINOPEPTIDASE
著者Yoshimoto, T, Kabashima, T, Uchikawa, K, Inoue, T, Tanaka, N.
登録日1999-06-28
公開日1999-07-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Crystal structure of prolyl aminopeptidase from Serratia marcescens.
J.Biochem.(Tokyo), 126, 1999
4J94
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Crystal structure of MycP1 from the ESX-1 type VII secretion system
分子名称: Membrane-anchored mycosin mycp1
著者Solomonson, M, Wasney, G.A, Watanabe, N, Gruninger, R.J, Prehna, G, Strynadka, N.C.J.
登録日2013-02-15
公開日2013-05-01
最終更新日2013-07-03
実験手法X-RAY DIFFRACTION (1.857 Å)
主引用文献Structure of the Mycosin-1 Protease from the Mycobacterial ESX-1 Protein Type VII Secretion System.
J.Biol.Chem., 288, 2013
3T5W
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2ME modified human SOD1
分子名称: COPPER (I) ION, SULFATE ION, Superoxide dismutase [Cu-Zn], ...
著者Ihara, K, Yamaguchi, Y, Torigoe, H, Wakatsuki, S, Taniguchi, N, Suzuki, K, Fujiwara, N.
登録日2011-07-28
公開日2012-08-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural switching of Cu,Zn-superoxide dismutases at loop VI: insights from the crystal structure of 2-mercaptoethanol-modified enzyme
Biosci.Rep., 32, 2012
4KPG
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Crystal structure of MycP1 from the ESX-1 type VII secretion system
分子名称: Membrane-anchored mycosin mycp1
著者Solomonson, M, Wasney, G.A, Watanabe, N, Gruninger, R.J, Prehna, G, Strynadka, N.C.J.
登録日2013-05-13
公開日2013-05-22
最終更新日2013-07-03
実験手法X-RAY DIFFRACTION (2.148 Å)
主引用文献Structure of the Mycosin-1 Protease from the Mycobacterial ESX-1 Protein Type VII Secretion System.
J.Biol.Chem., 288, 2013

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