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PDB: 1089 件

8WDV
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Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (2S)-3-hydroxypropane-1,2-diyl dihexadecanoate, Antenna complex alpha/beta subunit, ...
著者Tani, K, Kanno, R, Harada, A, Kobayashi, A, Minamino, A, Nakamura, N, Ji, X.-C, Purba, E.R, Hall, M, Yu, L.-J, Madigan, M.T, Mizoguchi, A, Iwasaki, K, Humbel, B.M, Kimura, Y, Wang-Otomo, Z.-Y.
登録日2023-09-16
公開日2024-02-21
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (2.24 Å)
主引用文献High-resolution structure and biochemical properties of the LH1-RC photocomplex from the model purple sulfur bacterium, Allochromatium vinosum.
Commun Biol, 7, 2024
8WDU
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Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (2S)-3-hydroxypropane-1,2-diyl dihexadecanoate, Antenna complex alpha/beta subunit, ...
著者Tani, K, Kanno, R, Harada, A, Kobayashi, A, Minamino, A, Nakamura, N, Ji, X.-C, Purba, E.R, Hall, M, Yu, L.-J, Madigan, M.T, Mizoguchi, A, Iwasaki, K, Humbel, B.M, Kimura, Y, Wang-Otomo, Z.-Y.
登録日2023-09-16
公開日2024-02-21
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (2.24 Å)
主引用文献High-resolution structure and biochemical properties of the LH1-RC photocomplex from the model purple sulfur bacterium, Allochromatium vinosum.
Commun Biol, 7, 2024
6IXQ
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Structure of Myo2-GTD in complex with Smy1
分子名称: Kinesin-related protein SMY1, Myosin-2
著者Tang, K, Wei, Z.
登録日2018-12-11
公開日2019-03-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.06 Å)
主引用文献Structural mechanism for versatile cargo recognition by the yeast class V myosin Myo2.
J.Biol.Chem., 294, 2019
6IXR
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Structure of Myo2-GTD in complex with Inp2
分子名称: Inheritance of peroxisomes protein 2, Myosin-2, SULFATE ION
著者Tang, K, Wei, Z.
登録日2018-12-11
公開日2019-03-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.854 Å)
主引用文献Structural mechanism for versatile cargo recognition by the yeast class V myosin Myo2.
J.Biol.Chem., 294, 2019
6IXO
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Apo structure of Myo2-GTD
分子名称: CHLORIDE ION, Myosin-2, SULFATE ION
著者Tang, K, Wei, Z.
登録日2018-12-11
公開日2019-03-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.901 Å)
主引用文献Structural mechanism for versatile cargo recognition by the yeast class V myosin Myo2.
J.Biol.Chem., 294, 2019
1AKP
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SEQUENTIAL 1H,13C AND 15N NMR ASSIGNMENTS AND SOLUTION CONFORMATION OF APOKEDARCIDIN
分子名称: APOKEDARCIDIN
著者Constantine, K.L, Colson, K.L, Wittekind, M, Friedrichs, M.S, Zein, N, Tuttle, J, Langley, D.R, Leet, J.E, Schroeder, D.R, Lam, K.S, Farmer II, B.T, Metzler, W.J, Bruccoleri, R.E, Mueller, L.
登録日1994-06-20
公開日1994-08-31
最終更新日2024-10-16
実験手法SOLUTION NMR
主引用文献Sequential 1H, 13C, and 15N NMR assignments and solution conformation of apokedarcidin.
Biochemistry, 33, 1994
5YU8
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Cofilin decorated actin filament
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Tanaka, K, Narita, A.
登録日2017-11-21
公開日2018-05-23
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural basis for cofilin binding and actin filament disassembly
Nat Commun, 9, 2018
6IXP
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Structure of Myo2-GTD in complex with Mmr1
分子名称: Mitochondrial MYO2 receptor-related protein 1, Myosin-2
著者Tang, K, Wei, Z.
登録日2018-12-11
公開日2019-03-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.733 Å)
主引用文献Structural mechanism for versatile cargo recognition by the yeast class V myosin Myo2.
J.Biol.Chem., 294, 2019
1BI6
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NMR STRUCTURE OF BROMELAIN INHIBITOR VI FROM PINEAPPLE STEM
分子名称: BROMELAIN INHIBITOR VI
著者Hatano, K.-I.
登録日1995-12-07
公開日1996-04-03
最終更新日2024-10-09
実験手法SOLUTION NMR
主引用文献Solution structure of bromelain inhibitor IV from pineapple stem: structural similarity with Bowman-Birk trypsin/chymotrypsin inhibitor from soybean.
Biochemistry, 35, 1996
4XXK
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Crystal structure of the Semet-derivative of the Bilin-binding domain of phycobilisome core-membrane linker ApcE
分子名称: PHYCOCYANOBILIN, Phycobiliprotein ApcE
著者Tang, K, Ding, W.-L, Hoppner, A, Gartner, W, Zhao, K.-H.
登録日2015-01-30
公開日2015-12-16
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.97 Å)
主引用文献The terminal phycobilisome emitter, LCM: A light-harvesting pigment with a phytochrome chromophore.
Proc.Natl.Acad.Sci.USA, 112, 2015
6DTF
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Crystal structure of Haemophilus influenzae OppA complex with KKK
分子名称: LYS-LYS-LYS, Periplasmic oligopeptide-binding protein, SULFATE ION
著者Tanaka, K.J, Pinkett, H.W.
登録日2018-06-16
公開日2018-11-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Oligopeptide-binding protein from nontypeableHaemophilus influenzaehas ligand-specific sites to accommodate peptides and heme in the binding pocket.
J. Biol. Chem., 294, 2019
2ZZ9
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Structure of aquaporin-4 S180D mutant at 2.8 A resolution by electron crystallography
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Aquaporin-4
著者Tani, K, Mitsuma, T, Hiroaki, Y, Kamegawa, A, Nishikawa, K, Tanimura, Y, Fujiyoshi, Y.
登録日2009-02-06
公開日2009-06-09
最終更新日2023-11-08
実験手法ELECTRON CRYSTALLOGRAPHY (2.8 Å)
主引用文献Mechanism of Aquaporin-4's Fast and Highly Selective Water Conduction and Proton Exclusion.
J.Mol.Biol., 389, 2009
6DQT
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Crystal structure of Haemophilus influenzae OppA complex with LGG
分子名称: ACETATE ION, LEU-GLY-GLY, Periplasmic oligopeptide-binding protein, ...
著者Tanaka, K.J, Pinkett, H.W.
登録日2018-06-11
公開日2018-11-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Oligopeptide-binding protein from nontypeableHaemophilus influenzaehas ligand-specific sites to accommodate peptides and heme in the binding pocket.
J. Biol. Chem., 294, 2019
6DQQ
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Crystal structure of Haemophilus influenzae OppA complex with endogenous peptide
分子名称: ACETATE ION, ALA-ALA-ALA-ALA, Periplasmic oligopeptide-binding protein, ...
著者Tanaka, K.J, Pinkett, H.W.
登録日2018-06-11
公開日2018-11-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Oligopeptide-binding protein from nontypeableHaemophilus influenzaehas ligand-specific sites to accommodate peptides and heme in the binding pocket.
J. Biol. Chem., 294, 2019
6DQU
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Crystal structure of Haemophilus influenzae OppA complex with GIINTL
分子名称: GLY-ILE-ILE-ASN-THR-LEU, Periplasmic oligopeptide-binding protein, SULFATE ION
著者Tanaka, K.J, Pinkett, H.W.
登録日2018-06-11
公開日2018-11-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Oligopeptide-binding protein from nontypeableHaemophilus influenzaehas ligand-specific sites to accommodate peptides and heme in the binding pocket.
J. Biol. Chem., 294, 2019
6DTH
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Crystal structure of Haemophilus influenzae OppA complex with RPPGFSPFR
分子名称: ARG-PRO-PRO-GLY-PHE, Periplasmic oligopeptide-binding protein, SULFATE ION
著者Tanaka, K.J, Pinkett, H.W.
登録日2018-06-16
公開日2018-11-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Oligopeptide-binding protein from nontypeableHaemophilus influenzaehas ligand-specific sites to accommodate peptides and heme in the binding pocket.
J. Biol. Chem., 294, 2019
2BI6
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NMR STUDY OF BROMELAIN INHIBITOR VI FROM PINEAPPLE STEM
分子名称: BROMELAIN INHIBITOR VI
著者Hatano, K.-I.
登録日1995-12-07
公開日1996-04-03
最終更新日2024-10-23
実験手法SOLUTION NMR
主引用文献Solution structure of bromelain inhibitor IV from pineapple stem: structural similarity with Bowman-Birk trypsin/chymotrypsin inhibitor from soybean.
Biochemistry, 35, 1996
6DTG
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Crystal structure of Haemophilus influenzae OppA complex with YLGANGRGGGS
分子名称: Periplasmic oligopeptide-binding protein, TYR-LEU-GLY-ALA-ASN-GLY
著者Tanaka, K.J, Pinkett, H.W.
登録日2018-06-16
公開日2018-11-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Oligopeptide-binding protein from nontypeableHaemophilus influenzaehas ligand-specific sites to accommodate peptides and heme in the binding pocket.
J. Biol. Chem., 294, 2019
5AZD
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Crystal structure of thermophilic rhodopsin.
分子名称: Bacteriorhodopsin
著者Mizutani, K, Hashimoto, N, Tsukamoto, T, Yamashita, K, Yamamoto, M, Sudo, Y, Murata, T.
登録日2015-09-30
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献X-ray crystallographic structure of thermophilic rhodopsin: implications for high thermal stability and optogenetic availability.
To Be Published
4K0W
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X-ray crystal structure of OXA-23 A220 duplication clinical variant
分子名称: 1,2-ETHANEDIOL, BICARBONATE ION, Beta-lactamase, ...
著者Kaitany, K.J, Klinger, N.V, Leonard, D.A, Powers, R.A.
登録日2013-04-04
公開日2013-08-07
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structures of the Class D Carbapenemases OXA-23 and OXA-146: Mechanistic Basis of Activity against Carbapenems, Extended-Spectrum Cephalosporins, and Aztreonam.
Antimicrob.Agents Chemother., 57, 2013
6DQR
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Crystal structure of Haemophilus influenzae OppA complex with MGG
分子名称: ACETATE ION, MET-GLY-GLY, Periplasmic oligopeptide-binding protein, ...
著者Tanaka, K.J, Pinkett, H.W.
登録日2018-06-11
公開日2018-11-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Oligopeptide-binding protein from nontypeableHaemophilus influenzaehas ligand-specific sites to accommodate peptides and heme in the binding pocket.
J. Biol. Chem., 294, 2019
7VY3
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STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES LACKING PROTEIN-U
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, Antenna pigment protein alpha chain, Antenna pigment protein beta chain, ...
著者Tani, K, Kanno, R, Kawamura, S, Kikuchi, R, Nagashima, K.V.P, Hall, M, Takahashi, A, Yu, L.-J, Kimura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y.
登録日2021-11-13
公開日2022-04-27
実験手法ELECTRON MICROSCOPY (2.63 Å)
主引用文献Asymmetric structure of the native Rhodobacter sphaeroides dimeric LH1-RC complex.
Nat Commun, 13, 2022
7VY2
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STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES DIMER
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, Antenna pigment protein alpha chain, Antenna pigment protein beta chain, ...
著者Tani, K, Kanno, R, Kawamura, S, Kikuchi, R, Nagashima, K.V.P, Hall, M, Takahashi, A, Yu, L.-J, Kimura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y.
登録日2021-11-13
公開日2022-04-27
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献Asymmetric structure of the native Rhodobacter sphaeroides dimeric LH1-RC complex.
Nat Commun, 13, 2022
1WE0
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Crystal structure of peroxiredoxin (AhpC) from Amphibacillus xylanus
分子名称: AMMONIUM ION, alkyl hydroperoxide reductase C
著者Kitano, K, Kita, A, Hakoshima, T, Niimura, Y, Miki, K.
登録日2004-05-21
公開日2005-03-29
最終更新日2018-02-07
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of decameric peroxiredoxin (AhpC) from Amphibacillus xylanus
Proteins, 59, 2005
1IEJ
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OVOTRANSFERRIN, N-TERMINAL LOBE, HOLO FORM, AT 1.65 A RESOLUTION
分子名称: CARBONATE ION, FE (III) ION, OVOTRANSFERRIN
著者Mizutani, K, Mikami, B, Hirose, M.
登録日2001-04-10
公開日2001-06-20
最終更新日2017-10-04
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Domain closure mechanism in transferrins: new viewpoints about the hinge structure and motion as deduced from high resolution crystal structures of ovotransferrin N-lobe.
J.Mol.Biol., 309, 2001

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