1GFH
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![BU of 1gfh by Molmil](/molmil-images/mine/1gfh) | CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT THE SURFACE POSITIONS | Descriptor: | LYSOZYME, SODIUM ION | Authors: | Funahashi, J, Takano, K, Yamagata, Y, Yutani, K. | Deposit date: | 2000-12-04 | Release date: | 2000-12-20 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Positive contribution of hydration structure on the surface of human lysozyme to the conformational stability. J.Biol.Chem., 277, 2002
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1GFT
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![BU of 1gft by Molmil](/molmil-images/mine/1gft) | CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT THE SURFACE POSITIONS | Descriptor: | LYSOZYME, SODIUM ION | Authors: | Funahashi, J, Takano, K, Yamagata, Y, Yutani, K. | Deposit date: | 2000-12-04 | Release date: | 2000-12-27 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Positive contribution of hydration structure on the surface of human lysozyme to the conformational stability. J.Biol.Chem., 277, 2002
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1GBY
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![BU of 1gby by Molmil](/molmil-images/mine/1gby) | CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME SUBSTITUTED AT THE SURFACE POSITIONS | Descriptor: | LYSOZYME, SODIUM ION | Authors: | Funahashi, J, Takano, K, Yamagata, Y, Yutani, K. | Deposit date: | 2000-06-26 | Release date: | 2000-07-27 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Role of surface hydrophobic residues in the conformational stability of human lysozyme at three different positions. Biochemistry, 39, 2000
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1C7P
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![BU of 1c7p by Molmil](/molmil-images/mine/1c7p) | CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME WITH FOUR EXTRA RESIDUES (EAEA) AT THE N-TERMINAL | Descriptor: | LYSOZYME, SODIUM ION | Authors: | Goda, S, Takano, K, Yamagata, Y, Katakura, Y, Yutani, K. | Deposit date: | 2000-02-29 | Release date: | 2000-04-05 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Effect of extra N-terminal residues on the stability and folding of human lysozyme expressed in Pichia pastoris. Protein Eng., 13, 2000
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3WR7
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![BU of 3wr7 by Molmil](/molmil-images/mine/3wr7) | Crystal Structure of Spermidine Acetyltransferase from Escherichia coli | Descriptor: | COENZYME A, SPERMIDINE, Spermidine N1-acetyltransferase | Authors: | Sugiyama, S, Ishikawa, S, Tomitori, S, Niiyama, M, Hirose, M, Miyazaki, Y, Higashi, K, Adachi, H, Takano, K, Murakami, S, Inoue, T, Mori, Y, Kashiwagi, K, Igarashi, K, Matsumura, H. | Deposit date: | 2014-02-20 | Release date: | 2015-09-02 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Molecular mechanism underlying promiscuous polyamine recognition by spermidine acetyltransferase Int.J.Biochem.Cell Biol., 76, 2016
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3VND
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![BU of 3vnd by Molmil](/molmil-images/mine/3vnd) | Crystal structure of tryptophan synthase alpha-subunit from the psychrophile Shewanella frigidimarina K14-2 | Descriptor: | 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, SULFATE ION, Tryptophan synthase alpha chain | Authors: | Mitsuya, D, Tanaka, S, Matsumura, H, Takano, K, Urano, N, Ishida, M. | Deposit date: | 2012-01-12 | Release date: | 2013-01-16 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Strategy for cold adaptation of the tryptophan synthase alpha subunit from the psychrophile Shewanella frigidimarina K14-2: crystal structure and physicochemical properties J.Biochem., 155, 2014
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1WSF
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![BU of 1wsf by Molmil](/molmil-images/mine/1wsf) | Co-crystal structure of E.coli RNase HI active site mutant (D134A*) with Mn2+ | Descriptor: | MANGANESE (II) ION, Ribonuclease HI | Authors: | Tsunaka, Y, Takano, K, Matsumura, H, Yamagata, Y, Kanaya, S. | Deposit date: | 2004-11-05 | Release date: | 2005-02-08 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Identification of Single Mn(2+) Binding Sites Required for Activation of the Mutant Proteins of E.coli RNase HI at Glu48 and/or Asp134 by X-ray Crystallography J.Mol.Biol., 345, 2005
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1WSE
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![BU of 1wse by Molmil](/molmil-images/mine/1wse) | Co-crystal structure of E.coli RNase HI active site mutant (E48A*) with Mn2+ | Descriptor: | MANGANESE (II) ION, Ribonuclease HI | Authors: | Tsunaka, Y, Takano, K, Matsumura, H, Yamagata, Y, Kanaya, S. | Deposit date: | 2004-11-05 | Release date: | 2005-02-08 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Identification of Single Mn(2+) Binding Sites Required for Activation of the Mutant Proteins of E.coli RNase HI at Glu48 and/or Asp134 by X-ray Crystallography J.Mol.Biol., 345, 2005
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1X0M
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![BU of 1x0m by Molmil](/molmil-images/mine/1x0m) | a Human Kynurenine Aminotransferase II Homologue from Pyrococcus horikoshii OT3 | Descriptor: | Aminotransferase II Homologue | Authors: | Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2005-03-24 | Release date: | 2005-04-12 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure of a human kynurenine aminotransferase II homologue from Pyrococcus horikoshii OT3 at 2.20 A resolution Proteins, 61, 2005
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1WSG
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![BU of 1wsg by Molmil](/molmil-images/mine/1wsg) | Co-crystal structure of E.coli RNase HI active site mutant (E48A/D134N*) with Mn2+ | Descriptor: | MANGANESE (II) ION, Ribonuclease HI | Authors: | Tsunaka, Y, Takano, K, Matsumura, H, Yamagata, Y, Kanaya, S. | Deposit date: | 2004-11-05 | Release date: | 2005-02-08 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Identification of Single Mn(2+) Binding Sites Required for Activation of the Mutant Proteins of E.coli RNase HI at Glu48 and/or Asp134 by X-ray Crystallography J.Mol.Biol., 345, 2005
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2D0C
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![BU of 2d0c by Molmil](/molmil-images/mine/2d0c) | Crystal structure of Bst-RNase HIII in complex with Mn2+ | Descriptor: | MANGANESE (II) ION, ribonuclease HIII | Authors: | Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2005-07-31 | Release date: | 2006-07-18 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Crystal structure and structure-based mutational analyses of RNase HIII from Bacillus stearothermophilus: a new type 2 RNase H with TBP-like substrate-binding domain at the N terminus J.Mol.Biol., 356, 2006
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2D0B
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![BU of 2d0b by Molmil](/molmil-images/mine/2d0b) | Crystal structure of Bst-RNase HIII in complex with Mg2+ | Descriptor: | MAGNESIUM ION, ribonuclease HIII | Authors: | Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2005-07-31 | Release date: | 2006-07-18 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal structure and structure-based mutational analyses of RNase HIII from Bacillus stearothermophilus: a new type 2 RNase H with TBP-like substrate-binding domain at the N terminus J.Mol.Biol., 356, 2006
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2D0A
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![BU of 2d0a by Molmil](/molmil-images/mine/2d0a) | Crystal structure of Bst-RNase HIII | Descriptor: | ribonuclease HIII | Authors: | Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2005-07-31 | Release date: | 2006-07-18 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structure and structure-based mutational analyses of RNase HIII from Bacillus stearothermophilus: a new type 2 RNase H with TBP-like substrate-binding domain at the N terminus J.Mol.Biol., 356, 2006
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2DFH
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![BU of 2dfh by Molmil](/molmil-images/mine/2dfh) | Crystal structure of Tk-RNase HII(1-212)-C | Descriptor: | Ribonuclease HII | Authors: | Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S. | Deposit date: | 2006-03-01 | Release date: | 2007-03-06 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.27 Å) | Cite: | Conformational contagion in a protein: Structural properties of a chameleon sequence Proteins, 68, 2007
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2DF5
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![BU of 2df5 by Molmil](/molmil-images/mine/2df5) | Crystal Structure of Pf-PCP(1-204)-C | Descriptor: | Pyrrolidone-carboxylate peptidase | Authors: | Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S. | Deposit date: | 2006-02-24 | Release date: | 2007-03-06 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Conformational contagion in a protein: structural properties of a chameleon sequence Proteins, 68, 2007
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2DFI
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![BU of 2dfi by Molmil](/molmil-images/mine/2dfi) | Crystal structure of Pf-MAP(1-292)-C | Descriptor: | COBALT (II) ION, Methionine aminopeptidase | Authors: | Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S. | Deposit date: | 2006-03-01 | Release date: | 2007-03-06 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Conformational contagion in a protein: Structural properties of a chameleon sequence Proteins, 68, 2007
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2DFE
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![BU of 2dfe by Molmil](/molmil-images/mine/2dfe) | Crystal structure of Tk-RNase HII(1-200)-C | Descriptor: | Ribonuclease HII | Authors: | Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S. | Deposit date: | 2006-03-01 | Release date: | 2007-03-06 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Conformational contagion in a protein: Structural properties of a chameleon sequence Proteins, 68, 2007
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2DFF
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![BU of 2dff by Molmil](/molmil-images/mine/2dff) | Crystal structure of Tk-RNase HII(1-204)-C | Descriptor: | Ribonuclease HII | Authors: | Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S. | Deposit date: | 2006-03-01 | Release date: | 2007-03-06 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Conformational contagion in a protein: Structural properties of a chameleon sequence Proteins, 68, 2007
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2E4L
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![BU of 2e4l by Molmil](/molmil-images/mine/2e4l) | Thermodynamic and Structural Analysis of Thermolabile RNase HI from Shewanella oneidensis MR-1 | Descriptor: | Ribonuclease HI | Authors: | Tadokoro, T, You, D.J, Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2006-12-13 | Release date: | 2007-05-01 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI. Biochemistry, 46, 2007
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2EHG
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![BU of 2ehg by Molmil](/molmil-images/mine/2ehg) | |
3U3G
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![BU of 3u3g by Molmil](/molmil-images/mine/3u3g) | Structure of LC11-RNase H1 Isolated from Compost by Metagenomic Approach: Insight into the Structural Bases for Unusual Enzymatic Properties of Sto-RNase H1 | Descriptor: | CHLORIDE ION, Ribonuclease H, UNKNOWN LIGAND | Authors: | Nguyen, T.N, Angkawidjaja, C, Kanaya, E, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2011-10-05 | Release date: | 2012-03-07 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Activity, stability, and structure of metagenome-derived LC11-RNase H1, a homolog of Sulfolobus tokodaii RNase H1 Protein Sci., 21, 2012
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3VHQ
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![BU of 3vhq by Molmil](/molmil-images/mine/3vhq) | Crystal structure of the Ca6 site mutant of Pro-SA-subtilisin | Descriptor: | CALCIUM ION, Tk-subtilisin | Authors: | Uehara, R, Takeuchi, Y, Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2011-09-01 | Release date: | 2012-07-11 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Requirement of Ca(2+) Ions for the Hyperthermostability of Tk-Subtilisin from Thermococcus kodakarensis Biochemistry, 51, 2012
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2ZWO
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![BU of 2zwo by Molmil](/molmil-images/mine/2zwo) | Crystal structure of Ca2 site mutant of Pro-S324A | Descriptor: | CALCIUM ION, Tk-subtilisin | Authors: | Takeuchi, Y, Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2008-12-17 | Release date: | 2009-06-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.07 Å) | Cite: | Requirement of a unique Ca(2+)-binding loop for folding of Tk-subtilisin from a hyperthermophilic archaeon. Biochemistry, 48, 2009
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2ZWP
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![BU of 2zwp by Molmil](/molmil-images/mine/2zwp) | Crystal structure of Ca3 site mutant of Pro-S324A | Descriptor: | CALCIUM ION, Tk-subtilisin | Authors: | Takeuchi, Y, Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2008-12-17 | Release date: | 2009-06-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Requirement of a unique Ca(2+)-binding loop for folding of Tk-subtilisin from a hyperthermophilic archaeon. Biochemistry, 48, 2009
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2Z1H
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![BU of 2z1h by Molmil](/molmil-images/mine/2z1h) | Crystal structure of E.coli RNase HI surface charged mutant(Q4R/T92K/Q105K/Q113R/Q115K/N143K/T145K) | Descriptor: | Ribonuclease HI | Authors: | You, D.J, Fukuchi, S, Nishikawa, K, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2007-05-08 | Release date: | 2007-11-13 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues J.Biochem.(Tokyo), 142, 2007
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