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PDB: 215 results

1ISP
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BU of 1isp by Molmil
Crystal structure of Bacillus subtilis lipase at 1.3A resolution
Descriptor: GLYCEROL, lipase
Authors:Kawasaki, K, Kondo, H, Suzuki, M, Ohgiya, S, Tsuda, S.
Deposit date:2001-12-19
Release date:2002-12-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Alternate conformations observed in catalytic serine of Bacillus subtilis lipase determined at 1.3 A resolution.
Acta Crystallogr.,Sect.D, 58, 2002
4YM8
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BU of 4ym8 by Molmil
Crystal structure of hen egg-white lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Sugahara, M, Nakane, T, Suzuki, M, Nango, E.
Deposit date:2015-03-06
Release date:2015-12-23
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of hen egg-white lysozyme
To Be Published
5B1G
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BU of 5b1g by Molmil
Crystal structure of hen egg-white lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Sugahara, M, Suzuki, M, Nango, E.
Deposit date:2015-12-03
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of hen egg-white lysozyme
To Be Published
5B1D
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BU of 5b1d by Molmil
Crystal structure of proteinase K from Engyodontium album
Descriptor: CALCIUM ION, Proteinase K
Authors:Sugahara, M, Suzuki, M, Numata, K.
Deposit date:2015-12-03
Release date:2016-12-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of proteinase K from Engyodontium album
To Be Published
5B1F
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BU of 5b1f by Molmil
Crystal structure of hen egg-white lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Sugahara, M, Suzuki, M, Nango, E.
Deposit date:2015-12-03
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of hen egg-white lysozyme
To Be Published
5B1E
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BU of 5b1e by Molmil
Crystal structure of proteinase K from Engyodontium album
Descriptor: CALCIUM ION, Proteinase K
Authors:Sugahara, M, Suzuki, M, Numata, K.
Deposit date:2015-12-03
Release date:2016-12-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of proteinase K from Engyodontium album
To Be Published
1V5C
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BU of 1v5c by Molmil
The crystal structure of the inactive form chitosanase from Bacillus sp. K17 at pH3.7
Descriptor: SULFATE ION, chitosanase
Authors:Adachi, W, Shimizu, S, Sunami, T, Fukazawa, T, Suzuki, M, Yatsunami, R, Nakamura, S, Takenaka, A.
Deposit date:2003-11-22
Release date:2004-12-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of family GH-8 chitosanase with subclass II specificity from Bacillus sp. K17
J.MOL.BIOL., 343, 2004
1V5D
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BU of 1v5d by Molmil
The crystal structure of the active form chitosanase from Bacillus sp. K17 at pH6.4
Descriptor: PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID), chitosanase
Authors:Adachi, W, Shimizu, S, Sunami, T, Fukazawa, T, Suzuki, M, Yatsunami, R, Nakamura, S, Takenaka, A.
Deposit date:2003-11-22
Release date:2004-12-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of family GH-8 chitosanase with subclass II specificity from Bacillus sp. K17
J.MOL.BIOL., 343, 2004
1SQJ
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BU of 1sqj by Molmil
Crystal Structure Analysis of Oligoxyloglucan reducing-end-specific cellobiohydrolase (OXG-RCBH)
Descriptor: oligoxyloglucan reducing-end-specific cellobiohydrolase
Authors:Yaoi, K, Kondo, H, Noro, N, Suzuki, M, Tsuda, S, Mitsuishi, Y.
Deposit date:2004-03-19
Release date:2004-07-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Tandem Repeat of a Seven-Bladed beta-Propeller Domain in Oligoxyloglucan Reducing-End-Specific Cellobiohydrolase
Structure, 12, 2004
7YRU
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BU of 7yru by Molmil
ALK2 antibody complex
Descriptor: Activin receptor type-1, antibody heavy chain, antibody light chain
Authors:Kawaguchi, Y, Nakamura, K, Suzuki, M, Tsuji, S, Katagiri, T.
Deposit date:2022-08-10
Release date:2023-05-17
Last modified:2023-06-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A blocking monoclonal antibody reveals dimerization of intracellular domains of ALK2 associated with genetic disorders.
Nat Commun, 14, 2023
2DPF
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BU of 2dpf by Molmil
Crystal Structure of curculin1 homodimer
Descriptor: Curculin, SULFATE ION
Authors:Kurimoto, E, Suzuki, M, Amemiya, E, Yamaguchi, Y, Nirasawa, S, Shimba, N, Xu, N, Kashiwagi, T, Kawai, M, Suzuki, E, Kato, K.
Deposit date:2006-05-11
Release date:2007-05-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Curculin Exhibits Sweet-tasting and Taste-modifying Activities through Its Distinct Molecular Surfaces.
J.Biol.Chem., 282, 2007
7CMM
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BU of 7cmm by Molmil
Crystal structure of TEAD1-YBD in complex with K-975
Descriptor: N-[3-(4-chloranylphenoxy)-4-methyl-phenyl]propanamide, Transcriptional enhancer factor TEF-1
Authors:Tsuji, Y, Suzuki, M, Yasunaga, M, Hamguchi, K, Saito, J.
Deposit date:2020-07-28
Release date:2021-02-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The novel potent TEAD inhibitor, K-975, inhibits YAP1/TAZ-TEAD protein-protein interactions and exerts an anti-tumor effect on malignant pleural mesothelioma.
Am J Cancer Res, 10, 2020
7D5N
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BU of 7d5n by Molmil
Crystal structure of inositol dehydrogenase homolog complexed with NADH and myo-inositol from Azotobacter vinelandii
Descriptor: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Oxidoreductase
Authors:Fukano, K, Ono, T, Suzuki, M, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S.
Deposit date:2020-09-27
Release date:2021-09-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of inositol dehydrogenase complexed with NADH and myo-inositol from Azotobacter vinelandii
To Be Published
7D5M
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BU of 7d5m by Molmil
Crystal structure of inositol dehydrogenase homolog complexed with NAD+ from Azotobacter vinelandii
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Oxidoreductase
Authors:Fukano, K, Ono, T, Suzuki, M, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S.
Deposit date:2020-09-27
Release date:2021-09-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of inositol dehydrogenase complexed with NAD+ from Azotobacter vinelandii
To Be Published
1WZW
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BU of 1wzw by Molmil
Crystal Structure of UbcH8
Descriptor: Ubiquitin-conjugating enzyme E2 L6
Authors:Mizushima, T, Suzuki, M, Teshima, N, Yamane, T, Murata, S, Tanaka, K.
Deposit date:2005-03-10
Release date:2005-03-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of UbcH8
To be Published
5AZ1
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BU of 5az1 by Molmil
Crystal structure of aldo-keto reductase (AKR2E5) complexed with NADPH
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Yamamoto, K, Higashiura, A, Suzuki, M, Nakagawa, A.
Deposit date:2015-09-15
Release date:2016-02-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori
Biochem.Biophys.Res.Commun., 474, 2016
5AZ0
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BU of 5az0 by Molmil
Crystal structure of aldo-keto reductase (AKR2E5) of the silkworm, Bombyx mori
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Yamamoto, K, Higashiura, A, Suzuki, M, Nakagawa, A.
Deposit date:2015-09-15
Release date:2016-02-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori
Biochem.Biophys.Res.Commun., 474, 2016
5B22
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BU of 5b22 by Molmil
Dimer structure of murine Nectin-3 D1D2
Descriptor: Nectin-3, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Takebe, K, Sangawa, T, Katsutani, T, Narita, H, Suzuki, M.
Deposit date:2015-12-28
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Dimer structure of murine Nectin-3 D1D2
To Be Published
5B21
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BU of 5b21 by Molmil
Dimer structure of murine Nectin-1 D1
Descriptor: murine Nectin-1 D1
Authors:Sangawa, T, Takebe, K, Suzuki, M.
Deposit date:2015-12-28
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Dimer structure of murine Nectin-1 D1
To Be Published
2CZQ
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BU of 2czq by Molmil
A novel cutinase-like protein from Cryptococcus sp.
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, cutinase-like protein
Authors:Masaki, K, Kamini, N.R, Ikeda, H, Iefuji, H, Kondo, H, Suzuki, M, Tsuda, S.
Deposit date:2005-07-14
Release date:2006-07-14
Last modified:2012-06-13
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Crystal structure and enhanced activity of a cutinase-like enzyme from Cryptococcus sp. strain S-2
Proteins, 77, 2009
7XGI
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BU of 7xgi by Molmil
COMT SAH Mg opicapone complex
Descriptor: Catechol O-methyltransferase, MAGNESIUM ION, Opicapone, ...
Authors:Takebe, K, Kuwada-Kusunose, T, Suzuki, M, Iijima, H.
Deposit date:2022-04-04
Release date:2023-04-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Computational Analyses of the Unique Interactions of Opicapone in the Binding Pocket of Catechol O -Methyltransferase: A Crystallographic Study and Fragment Molecular Orbital Analyses.
J.Chem.Inf.Model., 63, 2023
7XJB
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BU of 7xjb by Molmil
Rat-COMT, opicapone,SAM and Mg bond
Descriptor: CHLORIDE ION, Catechol O-methyltransferase, MAGNESIUM ION, ...
Authors:Takebe, K, Iijima, H, Suzuki, M, Kuwada-Kusunose, T.
Deposit date:2022-04-15
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and Computational Analyses of the Unique Interactions of Opicapone in the Binding Pocket of Catechol O -Methyltransferase: A Crystallographic Study and Fragment Molecular Orbital Analyses.
J.Chem.Inf.Model., 63, 2023
7W05
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BU of 7w05 by Molmil
12 mutant Ribonuclease from Hericium erinaceus GMP binding form
Descriptor: DI(HYDROXYETHYL)ETHER, GUANOSINE, Ribonuclease T1
Authors:Takebe, K, Chida, T, Suzuki, M, Itagaki, T, Morita, Y, Uzawa, N, Kobayashi, H.
Deposit date:2021-11-17
Release date:2022-11-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:12 mutant Ribonuclease from Hericium erinaceus GMP binding form
To Be Published
7CPK
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BU of 7cpk by Molmil
Xylanase R from Bacillus sp. TAR-1
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Endo-1,4-beta-xylanase A, ...
Authors:Kuwata, K, Suzuki, M, Takita, T, Nakatani, K, Li, T, Katano, Y, Kojima, K, Mizutani, K, Mikami, B, Yatsunami, R, Nakamura, S, Yasukawa, K.
Deposit date:2020-08-07
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Insight into the mechanism of thermostabilization of GH10 xylanase from Bacillus sp. strain TAR-1 by the mutation of S92 to E.
Biosci.Biotechnol.Biochem., 85, 2021
2Z5P
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BU of 2z5p by Molmil
Apo-Fr with low content of Pd ions
Descriptor: CADMIUM ION, Ferritin light chain, GLYCEROL, ...
Authors:Ueno, T, Hirata, K, Abe, M, Suzuki, M, Abe, S, Shimizu, N, Yamamoto, M, Takata, M, Watanabe, Y.
Deposit date:2007-07-16
Release date:2008-07-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Process of accumulation of metal ions on the interior surface of apo-ferritin: crystal structures of a series of apo-ferritins containing variable quantities of Pd(II) ions.
J.Am.Chem.Soc., 131, 2009

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數據於2024-06-12公開中

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