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PDB: 196 results

1UI8
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Site-directed mutagenesis of His592 involved in binding of copper ion in Arthrobacter globiformis amine oxidase
Descriptor: COPPER (II) ION, Phenylethylamine oxidase
Authors:Matsunami, H, Okajima, T, Hirota, S, Yamaguchi, H, Hori, H, Kuroda, S, Tanizawa, K.
Deposit date:2003-07-15
Release date:2004-04-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Chemical rescue of a site-specific mutant of bacterial copper amine oxidase for generation of the topa quinone cofactor
Biochemistry, 43, 2004
5JXL
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BU of 5jxl by Molmil
Cryo-EM structure of the flagellar hook of Campylobacter jejuni
Descriptor: flagellar hook protein FlgE
Authors:Matsunami, H, Wolf, M, Samatey, F.A.
Deposit date:2016-05-13
Release date:2016-11-16
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Complete structure of the bacterial flagellar hook reveals extensive set of stabilizing interactions
Nat Commun, 7, 2016
3HJR
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BU of 3hjr by Molmil
Crystal structure of serine protease of Aeromonas sobria
Descriptor: CALCIUM ION, Extracellular serine protease
Authors:Utsunomiya, H, Tsuge, H, Kobayashi, H, Okamoto, K.
Deposit date:2009-05-22
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis for the kexin-like serine protease from Aeromonas sobria as a sepsis-causing factor
J.Biol.Chem., 284, 2009
2RQ5
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BU of 2rq5 by Molmil
Solution structure of the AT-rich interaction domain (ARID) of Jumonji/JARID2
Descriptor: Protein Jumonji
Authors:Kusunoki, H, Kohno, T.
Deposit date:2009-02-06
Release date:2009-06-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the AT-rich interaction domain of Jumonji/JARID2
Proteins, 76, 2009
1A13
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BU of 1a13 by Molmil
G PROTEIN-BOUND CONFORMATION OF MASTOPARAN-X, NMR, 14 STRUCTURES
Descriptor: MASTOPARAN-X
Authors:Kusunoki, H, Wakamatsu, K, Sato, K, Miyazawa, T, Kohno, T.
Deposit date:1997-12-20
Release date:1999-01-13
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:G protein-bound conformation of mastoparan-X: heteronuclear multidimensional transferred nuclear overhauser effect analysis of peptide uniformly enriched with 13C and 15N.
Biochemistry, 37, 1998
3W5P
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BU of 3w5p by Molmil
Crystal structure of complexes of vitamin D receptor ligand binding domain with lithocholic acid derivatives
Descriptor: (3beta,5beta,14beta,17alpha)-3-hydroxycholan-24-oic acid, Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor
Authors:Masuno, H, Ikura, T, Ito, N.
Deposit date:2013-02-05
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of complexes of vitamin D receptor ligand-binding domain with lithocholic acid derivatives.
J.Lipid Res., 54, 2013
3W5Q
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BU of 3w5q by Molmil
Crystal structure of complexes of vitamin D receptor ligand binding domain with lithocholic acid derivatives
Descriptor: (5beta,9beta)-3-oxocholan-24-oic acid, Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor
Authors:Masuno, H, Ikura, T, Ito, N.
Deposit date:2013-02-05
Release date:2013-06-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of complexes of vitamin D receptor ligand-binding domain with lithocholic acid derivatives.
J.Lipid Res., 54, 2013
3W5R
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BU of 3w5r by Molmil
Crystal structure of complexes of vitamin D receptor ligand binding domain with lithocholic acid derivatives
Descriptor: (3beta,5beta,9beta)-3-(acetyloxy)cholan-24-oic acid, Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor
Authors:Masuno, H, Ikura, T, Ito, N.
Deposit date:2013-02-06
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of complexes of vitamin D receptor ligand-binding domain with lithocholic acid derivatives.
J.Lipid Res., 54, 2013
3W5T
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BU of 3w5t by Molmil
Crystal structure of complexes of vitamin D receptor ligand binding domain with lithocholic acid derivatives
Descriptor: (3beta,5beta,9beta)-3-(propanoyloxy)cholan-24-oic acid, Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor
Authors:Masuno, H, Ikura, T, Ito, N.
Deposit date:2013-02-06
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Crystal structures of complexes of vitamin D receptor ligand-binding domain with lithocholic acid derivatives.
J.Lipid Res., 54, 2013
1U5P
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BU of 1u5p by Molmil
Crystal Structure of Repeats 15 and 16 of Chicken Brain Alpha Spectrin
Descriptor: PHOSPHATE ION, POTASSIUM ION, Spectrin alpha chain, ...
Authors:Kusunoki, H, Minasov, G, MacDonald, R.I, Mondragon, A.
Deposit date:2004-07-28
Release date:2004-10-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Independent Movement, Dimerization and Stability of Tandem Repeats of Chicken Brain alpha-Spectrin
J.Mol.Biol., 344, 2004
1U4Q
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Crystal Structure of Repeats 15, 16 and 17 of Chicken Brain Alpha Spectrin
Descriptor: Spectrin alpha chain, brain
Authors:Kusunoki, H, Minasov, G, MacDonald, R.I, Mondragon, A.
Deposit date:2004-07-26
Release date:2004-10-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Independent Movement, Dimerization and Stability of Tandem Repeats of Chicken Brain alpha-Spectrin
J.Mol.Biol., 344, 2004
1S35
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BU of 1s35 by Molmil
Crystal Structure of Repeats 8 and 9 of Human Erythroid Spectrin
Descriptor: SULFATE ION, Spectrin beta chain, erythrocyte
Authors:Kusunoki, H, MacDonald, R.I, Mondragon, A.
Deposit date:2004-01-12
Release date:2004-04-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights into the stability and flexibility of unusual erythroid spectrin repeats
Structure, 12, 2004
1K1V
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BU of 1k1v by Molmil
Solution Structure of the DNA-Binding Domain of MafG
Descriptor: MafG
Authors:Kusunoki, H, Motohashi, H, Katsuoka, F, Morohashi, A, Yamamoto, M, Tanaka, T.
Deposit date:2001-09-25
Release date:2002-04-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the DNA-binding domain of MafG.
Nat.Struct.Biol., 9, 2002
6K5O
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BU of 6k5o by Molmil
Development of Novel Lithocholic Acid Derivatives as Vitamin D Receptor Agonists
Descriptor: (4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-3-methylsulfonyloxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid, Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor
Authors:Masuno, H, Kagechika, H, Ito, N.
Deposit date:2019-05-29
Release date:2019-07-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Development of novel lithocholic acid derivatives as vitamin D receptor agonists.
Bioorg.Med.Chem., 27, 2019
7C7V
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BU of 7c7v by Molmil
Vitamin D3 receptor/lithochoric acid derivative complex
Descriptor: (4R)-4-[(3R,5R,8R,9S,10S,13R,14S,17R)-10,13-dimethyl-3-(2-methyl-2-oxidanyl-propyl)-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoic acid, FORMIC ACID, Mediator of RNA polymerase II transcription subunit 1, ...
Authors:Masuno, H, Numoto, N, Kagechika, H, Ito, N.
Deposit date:2020-05-26
Release date:2021-01-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Lithocholic Acid Derivatives as Potent Vitamin D Receptor Agonists.
J.Med.Chem., 64, 2021
7C7W
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BU of 7c7w by Molmil
Vitamin D3 receptor/lithochoric acid derivative complex
Descriptor: (4R)-4-[(3S,5R,8R,9S,10S,13R,14S,17R)-10,13-dimethyl-3-(2-methyl-2-oxidanyl-propyl)-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoic acid, FORMIC ACID, Mediator of RNA polymerase II transcription subunit 1, ...
Authors:Masuno, H, Numoto, N, Kagechika, H, Ito, N.
Deposit date:2020-05-26
Release date:2021-01-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Lithocholic Acid Derivatives as Potent Vitamin D Receptor Agonists.
J.Med.Chem., 64, 2021
3TEE
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BU of 3tee by Molmil
Crystal Structure of Salmonella FlgA in open form
Descriptor: CHLORIDE ION, Flagella basal body P-ring formation protein flgA, GLYCEROL
Authors:Matsunami, H, Samatey, F.A, Namba, K.
Deposit date:2011-08-12
Release date:2012-08-15
Last modified:2016-07-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural flexibility of the periplasmic protein, FlgA, regulates flagellar P-ring assembly in Salmonella enterica
Sci Rep, 6, 2016
2EJY
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BU of 2ejy by Molmil
Solution structure of the p55 PDZ T85C domain complexed with the glycophorin C F127C peptide
Descriptor: 55 kDa erythrocyte membrane protein, Glycophorin C
Authors:Kusunoki, H, Kohno, T.
Deposit date:2007-03-22
Release date:2008-02-12
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:Structural insight into the interaction between the p55 PDZ domain and glycophorin C
Biochem.Biophys.Res.Commun., 359, 2007
2EV8
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BU of 2ev8 by Molmil
Solution structure of the erythroid p55 PDZ domain
Descriptor: 55 kDa erythrocyte membrane protein
Authors:Kusunoki, H, Kohno, T.
Deposit date:2005-10-31
Release date:2006-10-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of human erythroid p55 PDZ domain
Proteins, 64, 2006
7EHA
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BU of 7eha by Molmil
Crystal structure of the flagellar hook cap from Salmonella enterica serovar Typhimurium
Descriptor: Basal-body rod modification protein FlgD
Authors:Matsunami, H, Yoon, Y.-H, Imada, K, Namba, K, Samatey, F.A.
Deposit date:2021-03-29
Release date:2021-11-24
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the bacterial flagellar hook cap provides insights into a hook assembly mechanism
Commun Biol, 4, 2021
7EH9
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BU of 7eh9 by Molmil
Crystal structure of the flagellar hook cap fragment from Salmonella enterica serovar Typhimurium
Descriptor: Basal-body rod modification protein FlgD
Authors:Matsunami, H, Yoon, Y.-H, Imada, K, Namba, K, Samatey, F.A.
Deposit date:2021-03-29
Release date:2021-11-24
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the bacterial flagellar hook cap provides insights into a hook assembly mechanism
Commun Biol, 4, 2021
4X1D
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BU of 4x1d by Molmil
Ytterbium-bound human serum transferrin
Descriptor: GLYCEROL, MALONATE ION, Serotransferrin, ...
Authors:Wang, M, Zhang, H, Sun, H.
Deposit date:2014-11-24
Release date:2015-04-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:"Anion clamp" allows flexible protein to impose coordination geometry on metal ions
Chem.Commun.(Camb.), 51, 2015
4H0W
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BU of 4h0w by Molmil
Bismuth bound human serum transferrin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Bismuth(III) ION, CARBONATE ION, ...
Authors:Yang, N, Zhang, H, Wang, M, Hao, Q, Sun, H.
Deposit date:2012-09-10
Release date:2012-12-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Iron and bismuth bound human serum transferrin reveals a partially-opened conformation in the N-lobe.
Sci Rep, 2, 2012
2XFL
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BU of 2xfl by Molmil
Induced-fit and allosteric effects upon polyene binding revealed by crystal structures of the Dynemicin thioesterase
Descriptor: DYNE7
Authors:Liew, C.W, Sharff, A, Kotaka, M, Kong, R, Sun, H, Bricogne, G, Liang, Z, Lescar, J.
Deposit date:2010-05-26
Release date:2010-10-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Induced-Fit Upon Ligand Binding Revealed by Crystal Structures of the Hot-Dog Fold Thioesterase in Dynemicin Biosynthesis.
J.Mol.Biol., 404, 2010
4X1B
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BU of 4x1b by Molmil
Human serum transferrin with ferric ion bound at the C-lobe only
Descriptor: FE (III) ION, GLYCEROL, MALONATE ION, ...
Authors:Wang, M, Zhang, H, Sun, H.
Deposit date:2014-11-24
Release date:2015-04-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:"Anion clamp" allows flexible protein to impose coordination geometry on metal ions
Chem.Commun.(Camb.), 51, 2015

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