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PDB: 198 件
2HVW
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Crystal structure of dCMP deaminase from Streptococcus mutans
分子名称: 1,4-DIETHYLENE DIOXIDE, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 3,4-DIHYDRO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE, ...
著者Hou, H.F, Gao, Z.Q, Li, L.F, Liang, Y.H, Su, X.D, Dong, Y.H.
登録日2006-07-31
公開日2007-09-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Crystal structures of Streptococcus mutans 2'-deoxycytidylate deaminase and its complex with substrate analog and allosteric regulator dCTP x Mg2+.
J.Mol.Biol., 377, 2008
7QA9
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BU of 7qa9 by Molmil
10bp DNA/DNA duplex
分子名称: DNA (5'-D(*CP*CP*AP*TP*TP*AP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3')
著者Li, Q, Trajkovski, M, Fan, C, Chen, J, Zhou, Y, Lu, K, Li, H, Su, X, Xi, Z, Plavec, J, Zhou, C.
登録日2021-11-16
公開日2022-11-16
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献4'-SCF 3 -Labeling Constitutes a Sensitive 19 F NMR Probe for Characterization of Interactions in the Minor Groove of DNA.
Angew.Chem.Int.Ed.Engl., 61, 2022
2HVV
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BU of 2hvv by Molmil
Crystal structure of dCMP deaminase from Streptococcus mutans
分子名称: SULFATE ION, ZINC ION, deoxycytidylate deaminase
著者Hou, H.F, Gao, Z.Q, Li, L.F, Liang, Y.H, Su, X.D, Dong, Y.H.
登録日2006-07-31
公開日2007-09-11
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structures of Streptococcus mutans 2'-deoxycytidylate deaminase and its complex with substrate analog and allosteric regulator dCTP x Mg2+.
J.Mol.Biol., 377, 2008
3RNY
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BU of 3rny by Molmil
Crystal structure of human RSK1 C-terminal kinase domain
分子名称: Ribosomal protein S6 kinase alpha-1, SODIUM ION
著者Li, D, Fu, T.-M, Nan, J, Su, X.-D.
登録日2011-04-24
公開日2012-04-25
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis for the autoinhibition of the C-terminal kinase domain of human RSK1.
Acta Crystallogr.,Sect.D, 68, 2012
6IJJ
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BU of 6ijj by Molmil
Photosystem I of Chlamydomonas reinhardtii
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
著者Pan, X, Ma, J, Su, X, Liu, Z, Zhang, X, Li, M.
登録日2018-10-10
公開日2019-03-20
最終更新日2019-05-01
実験手法ELECTRON MICROSCOPY (2.89 Å)
主引用文献Antenna arrangement and energy transfer pathways of a green algal photosystem-I-LHCI supercomplex.
Nat Plants, 5, 2019
6IJO
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Photosystem I of Chlamydomonas reinhardtii
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
著者Pan, X, Ma, J, Su, X, Liu, Z, Zhang, X, Li, M.
登録日2018-10-10
公開日2019-03-20
最終更新日2019-05-01
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Antenna arrangement and energy transfer pathways of a green algal photosystem-I-LHCI supercomplex.
Nat Plants, 5, 2019
4L22
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BU of 4l22 by Molmil
Crystal structure of putative glycogen phosphorylase from Streptococcus mutans
分子名称: Phosphorylase
著者Lihan, M.-Y, Li, G.-L, Li, L.-F, Su, X.-D.
登録日2013-06-04
公開日2014-06-25
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Crystal structure of putative glycogen phosphorylase from Streptococcus mutans
To be Published
4F8Y
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Complex structure of NADPH:quinone oxidoreductase with menadione in Streptococcus mutans
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, MENADIONE, NADPH Quinone Oxidoreductase
著者Wang, Z, Li, L, Su, X.-D.
登録日2012-05-18
公開日2012-06-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.796 Å)
主引用文献Complex structure of NADPH:quinone oxidoreductase with menadione in Streptococcus mutans
TO BE PUBLISHED
7F05
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BU of 7f05 by Molmil
Crystal structure of human cardiac calsequestrin bound with calcium
分子名称: CALCIUM ION, Calsequestrin-2
著者Fan, X.X, Liu, X.X, Su, X.D, Wang, S.Q.
登録日2021-06-03
公開日2022-06-08
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.298 Å)
主引用文献Ca2+-dependent Formation of a Non-transmembrane Channel in a Calsequestrin-2 Dimer
To Be Published
2HCU
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BU of 2hcu by Molmil
Crystal Structure Of Smu.1381 (or LeuD) from Streptococcus Mutans
分子名称: 3-isopropylmalate dehydratase small subunit, SULFATE ION
著者Gao, Z.Q, Hou, H.F, Li, L.F, Liang, Y.H, Su, X.D, Dong, Y.H.
登録日2006-06-19
公開日2006-07-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure Of Smu.1381 (or LeuD) from Streptococcus Mutans
To be Published
2G0I
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BU of 2g0i by Molmil
Crystal structure of SMU.848 from Streptococcus mutans
分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, hypothetical protein SMU.848
著者Hou, H.-F, Gao, Z.-Q, Li, L.-F, Liang, Y.-H, Su, X.-D, Dong, Y.-H.
登録日2006-02-13
公開日2006-08-08
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of SMU.848 from Streptococcus mutans
To be Published
3EXR
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BU of 3exr by Molmil
Crystal structure of KGPDC from Streptococcus mutans
分子名称: RmpD (Hexulose-6-phosphate synthase)
著者Li, G.L, Liu, X, Li, L.F, Su, X.D.
登録日2008-10-16
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Open-closed conformational change revealed by the crystal structures of 3-keto-L-gulonate 6-phosphate decarboxylase from Streptococcus mutans
Biochem.Biophys.Res.Commun., 381, 2009
3EXS
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BU of 3exs by Molmil
Crystal structure of KGPDC from Streptococcus mutans in complex with D-R5P
分子名称: RIBULOSE-5-PHOSPHATE, RmpD (Hexulose-6-phosphate synthase)
著者Li, G.L, Liu, X, Wang, K.T, Li, L.F, Su, X.D.
登録日2008-10-17
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Open-closed conformational change revealed by the crystal structures of 3-keto-L-gulonate 6-phosphate decarboxylase from Streptococcus mutans
Biochem.Biophys.Res.Commun., 381, 2009
3JCU
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BU of 3jcu by Molmil
Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution
分子名称: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
著者Wei, X.P, Zhang, X.Z, Su, X.D, Cao, P, Liu, X.Y, Li, M, Chang, W.R, Liu, Z.F.
登録日2016-03-10
公開日2016-05-25
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of spinach photosystem II-LHCII supercomplex at 3.2 A resolution
Nature, 534, 2016
3SR7
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BU of 3sr7 by Molmil
Crystal structure of S. mutans isopentenyl pyrophosphate isomerase
分子名称: Isopentenyl-diphosphate delta-isomerase, PHOSPHATE ION
著者Liu, Y.H, Fu, T.M, Liu, X, Su, X.D.
登録日2011-07-07
公開日2012-07-11
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.036 Å)
主引用文献Crystal structure of S. mutans isopentenyl pyrophosphate isomerase
To be Published
3EXT
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BU of 3ext by Molmil
Crystal structure of KGPDC from Streptococcus mutans
分子名称: MAGNESIUM ION, RmpD (Hexulose-6-phosphate synthase)
著者Liu, X, Li, G.L, Li, L.F, Su, X.D.
登録日2008-10-17
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Open-closed conformational change revealed by the crystal structures of 3-keto-L-gulonate 6-phosphate decarboxylase from Streptococcus mutans
Biochem.Biophys.Res.Commun., 381, 2009
3SQZ
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BU of 3sqz by Molmil
Crystal structure of HMG_CoA synthase complexed with CoA
分子名称: COENZYME A, GLYCEROL, Putative hydroxymethylglutaryl-CoA synthase
著者Liu, Y.H, Fu, T.M, Liu, X, Su, X.D.
登録日2011-07-06
公開日2012-07-11
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystal structure of HMG-CoA synthase from Streptococcus mutans
To be Published
3H6X
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BU of 3h6x by Molmil
Crystal structure of dUTPase from Streptococcus mutans
分子名称: dUTPase
著者Li, G.L, Wang, K.T, Liu, X, Li, L.F, Su, X.D.
登録日2009-04-24
公開日2010-05-05
最終更新日2018-05-23
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure and activity analysis of dUTP nucleotidohydrolase from Streptococcus mutans
To be Published
3E4O
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BU of 3e4o by Molmil
Crystal structure of succinate bound state DctB
分子名称: C4-dicarboxylate transport sensor protein dctB, MAGNESIUM ION, SUCCINIC ACID
著者Zhou, Y.F, Nan, J, Nan, B.Y, Liang, Y.H, Panjikar, S, Su, X.D.
登録日2008-08-12
公開日2008-10-21
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献C4-dicarboxylates sensing mechanism revealed by the crystal structures of DctB sensor domain.
J.Mol.Biol., 383, 2008
5EMQ
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BU of 5emq by Molmil
Transcription factor GRDBD and GRE complex
分子名称: DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*AP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*GP*AP*TP*GP*TP*TP*CP*TP*G)-3'), Glucocorticoid receptor, ...
著者Lian, T, Jin, J, Su, X.
登録日2015-11-06
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The effects of cytosine methylation on general transcription factors
To Be Published
5EMP
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BU of 5emp by Molmil
Transcription factor GRDBD and mmGRE complex
分子名称: DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*GP*AP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(P*CP*CP*AP*GP*AP*AP*CP*AP*TP*(5CM)P*AP*TP*GP*TP*TP*CP*TP*G)-3'), Glucocorticoid receptor, ...
著者Lian, T, Jin, J, Su, X.
登録日2015-11-06
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The effects of cytosine methylation on general transcription factors
To Be Published
7DCN
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BU of 7dcn by Molmil
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
分子名称: Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, SULFATE ION, ZINC ION
著者Xu, H, Wang, B, Su, X.D.
登録日2020-10-26
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.695 Å)
主引用文献Co-evolution-based prediction of metal-binding sites in proteomes by machine learning.
Nat.Chem.Biol., 19, 2023
7DCM
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BU of 7dcm by Molmil
Crystal structure of CITX
分子名称: Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, ZINC ION
著者Xu, H, Wang, B, Su, X.D.
登録日2020-10-26
公開日2021-11-03
最終更新日2023-05-17
実験手法X-RAY DIFFRACTION (2.495 Å)
主引用文献Co-evolution-based prediction of metal-binding sites in proteomes by machine learning.
Nat.Chem.Biol., 19, 2023
5Z7C
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BU of 5z7c by Molmil
crystal structure of cyclic GMP-AMP specifc phosphodiesterases in V.cholerae (V-cGAP3)
分子名称: 3'3'-cGAMP-specific phosphodiesterase 3
著者Deng, M.J, Ye, Z.Y, Su, X.D.
登録日2018-01-28
公開日2019-01-02
実験手法X-RAY DIFFRACTION (2.76 Å)
主引用文献Novel Mechanism for Cyclic Dinucleotide Degradation Revealed by Structural Studies of Vibrio Phosphodiesterase V-cGAP3.
J. Mol. Biol., 430, 2018
3GAC
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BU of 3gac by Molmil
Structure of mif with HPP
分子名称: 3-(4-HYDROXY-PHENYL)PYRUVIC ACID, ACETIC ACID, Macrophage migration inhibitory factor-like protein, ...
著者Zhou, Y.-F, Su, X.-D, Shao, D, Wang, H.
登録日2009-02-17
公開日2009-12-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and functional comparison of MIF ortholog from Plasmodium yoelii with MIF from its rodent host
Mol.Immunol., 47, 2010

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