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PDB: 29 件

3G9C
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Crystal structure of the product Bacillus anthracis glmS ribozyme
分子名称: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, GLMS RIBOZYME, MAGNESIUM ION, ...
著者Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D.
登録日2009-02-13
公開日2009-11-03
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
Biochemistry, 48, 2009
3G8T
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Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P
分子名称: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3'), ...
著者Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D.
登録日2009-02-12
公開日2009-11-03
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
Biochemistry, 48, 2009
3G96
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Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P
分子名称: 2-amino-2-deoxy-6-O-phosphono-alpha-D-mannopyranose, GLMS RIBOZYME, MAGNESIUM ION, ...
著者Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D.
登録日2009-02-12
公開日2009-11-03
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
Biochemistry, 48, 2009
3G8S
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BU of 3g8s by Molmil
Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme
分子名称: GLMS RIBOZYME, MAGNESIUM ION, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3'), ...
著者Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D.
登録日2009-02-12
公開日2009-11-03
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
Biochemistry, 48, 2009
3L3C
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BU of 3l3c by Molmil
Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P
分子名称: 6-O-phosphono-alpha-D-glucopyranose, GLMS RIBOZYME, MAGNESIUM ION, ...
著者Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D.
登録日2009-12-16
公開日2009-12-29
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
Biochemistry, 48, 2009
3MXH
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Native structure of a c-di-GMP riboswitch from V. cholerae
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MAGNESIUM ION, U1 small nuclear ribonucleoprotein A, ...
著者Strobel, S.A, Smith, K.D.
登録日2010-05-07
公開日2010-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .
Biochemistry, 49, 2010
3MUT
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Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMP
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), G20A/C92U mutant c-di-GMP riboswitch, MAGNESIUM ION, ...
著者Strobel, S.A, Smith, K.D.
登録日2010-05-03
公開日2010-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .
Biochemistry, 49, 2010
3MUR
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BU of 3mur by Molmil
Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), C92U mutant c-di-GMP riboswitch, MAGNESIUM ION, ...
著者Strobel, S.A, Smith, K.D.
登録日2010-05-03
公開日2010-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .
Biochemistry, 49, 2010
3MUM
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Crystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMP
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), G20A mutant c-di-GMP Riboswitch, MAGNESIUM ION, ...
著者Strobel, S.A, Smith, K.D.
登録日2010-05-03
公開日2010-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .
Biochemistry, 49, 2010
3MUV
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BU of 3muv by Molmil
Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-AMP
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, G20A/C92U mutant c-di-GMP riboswitch, MAGNESIUM ION, ...
著者Strobel, S.A, Smith, K.D.
登録日2010-05-03
公開日2010-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .
Biochemistry, 49, 2010
1KQS
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The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis
分子名称: 23S RRNA, 5S RRNA, 6-AMINOHEXANOIC ACID, ...
著者Schmeing, T.M, Seila, A.C, Hansen, J.L, Freeborn, B, Soukup, J.K, Scaringe, S.A, Strobel, S.A, Moore, P.B, Steitz, T.A.
登録日2002-01-07
公開日2002-02-22
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits.
Nat.Struct.Biol., 9, 2002
1U6B
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CRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONS
分子名称: 197-MER, 5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*GP*AP*CP*GP *GP*CP*C)-3', 5'-R(*CP*AP*(5MU))-3', ...
著者Adams, P.L, Stahley, M.R, Kosek, A.B, Wang, J, Strobel, S.A.
登録日2004-07-29
公開日2004-08-10
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal Structure of a Self-Splicing Group I Intron with Both Exons.
Nature, 430, 2004
5T83
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Structure of a guanidine-I riboswitch from S. acidophilus
分子名称: GUANIDINE, IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ...
著者Reiss, C.W, Xiong, Y, Strobel, S.A.
登録日2016-09-06
公開日2017-01-11
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Structural Basis for Ligand Binding to the Guanidine-I Riboswitch.
Structure, 25, 2017
1ZZN
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BU of 1zzn by Molmil
Crystal structure of a group I intron/two exon complex that includes all catalytic metal ion ligands.
分子名称: 197-MER, 5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*GP*AP*CP*GP*GP*CP*C)-3', 5'-R(*CP*AP*(5MU))-3', ...
著者Stahley, M.R, Strobel, S.A.
登録日2005-06-14
公開日2005-08-30
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (3.37 Å)
主引用文献Structural evidence for a two-metal-ion mechanism of group I intron splicing.
Science, 309, 2005
2HBN
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Crystallization of the Tl+-form of the Oxytricha nova G-quadruplex
分子名称: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', THALLIUM (I) ION
著者Gill, M.L, Strobel, S.A, Loria, J.P.
登録日2006-06-14
公開日2006-09-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystallization and characterization of the thallium form of the Oxytricha nova G-quadruplex.
Nucleic Acids Res., 34, 2006
5VJB
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BU of 5vjb by Molmil
Guanidine-II riboswitch P2 hairpin dimer with 5-bromoU substitution from Pseudomonas aeruginosa
分子名称: GUANIDINE, MAGNESIUM ION, RNA (5'-R(*GP*CP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*(5BU)P*GP*C)-3'), ...
著者Reiss, C.W, Strobel, S.A.
登録日2017-04-19
公開日2017-06-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis for ligand binding to the guanidine-II riboswitch.
RNA, 23, 2017
5VJ9
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Guanidine-II riboswitch P2 hairpin dimer from Pseudomonas aeruginosa
分子名称: GUANIDINE, MAGNESIUM ION, POTASSIUM ION, ...
著者Reiss, C.W, Strobel, S.A.
登録日2017-04-19
公開日2017-06-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Structural basis for ligand binding to the guanidine-II riboswitch.
RNA, 23, 2017
2AKG
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Thallium form of the G-Quadruplex from Oxytricha Nova, d(G4T4G4)2
分子名称: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'
著者Gill, M.L, Strobel, S.A, Loria, J.P.
登録日2005-08-03
公開日2005-11-08
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献(205)Tl NMR methods for the characterization of monovalent cation binding to nucleic acids
J.Am.Chem.Soc., 127, 2005
3Q3Z
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BU of 3q3z by Molmil
Structure of a c-di-GMP-II riboswitch from C. acetobutylicum bound to c-di-GMP
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MAGNESIUM ION, c-di-GMP-II riboswitch
著者Smith, K.D, Shanahan, C.A, Moore, E.L, Simon, A.C, Strobel, S.A.
登録日2010-12-22
公開日2011-05-11
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Structural basis of differential ligand recognition by two classes of bis-(3'-5')-cyclic dimeric guanosine monophosphate-binding riboswitches.
Proc.Natl.Acad.Sci.USA, 108, 2011
3UD4
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The C92U mutant c-di-GMP-I riboswitch bound to GpA
分子名称: MAGNESIUM ION, RNA (5'-R(*GP*A)-3'), RNA (92-MER), ...
著者Smith, K.D, Strobel, S.A.
登録日2011-10-27
公開日2012-01-04
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.
Biochemistry, 51, 2012
3UD3
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The C92U mutant c-di-GMP-I riboswitch bound to pGpA
分子名称: MAGNESIUM ION, RNA (5'-R(P*GP*A)-3'), RNA (92-MER), ...
著者Smith, K.D, Strobel, S.A.
登録日2011-10-27
公開日2012-01-04
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.
Biochemistry, 51, 2012
3UCZ
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BU of 3ucz by Molmil
The c-di-GMP-I riboswitch bound to GpG
分子名称: MAGNESIUM ION, RNA (5'-R(*GP*G)-3'), RNA (92-MER), ...
著者Smith, K.D, Strobel, S.A.
登録日2011-10-27
公開日2012-01-04
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.
Biochemistry, 51, 2012
3UCU
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The c-di-GMP-I riboswitch bound to pGpG
分子名称: MAGNESIUM ION, RNA (92-MER), U1 small nuclear ribonucleoprotein A, ...
著者Smith, K.D, Strobel, S.A.
登録日2011-10-27
公開日2012-01-04
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.
Biochemistry, 51, 2012
3BO2
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BU of 3bo2 by Molmil
A relaxed active site following exon ligation by a group I intron
分子名称: Group I intron P9, MAGNESIUM ION, RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*G)-3'), ...
著者Lipchock, S.V, Strobel, S.A.
登録日2007-12-17
公開日2008-04-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.31 Å)
主引用文献A relaxed active site after exon ligation by the group I intron
Proc.Natl.Acad.Sci.Usa, 105, 2008
3BO3
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A relaxed active site following exon ligation by a group I intron
分子名称: Group I intron P9, MAGNESIUM ION, POTASSIUM ION, ...
著者Lipchock, S.V, Strobel, S.A.
登録日2007-12-17
公開日2008-04-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献A relaxed active site after exon ligation by the group I intron
Proc.Natl.Acad.Sci.Usa, 105, 2008

 

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