3R7P
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![BU of 3r7p by Molmil](/molmil-images/mine/3r7p) | The crystal structure of I-LtrI | Descriptor: | DNA (5'-D(*CP*AP*AP*AP*TP*GP*CP*TP*CP*CP*TP*AP*TP*AP*C)-3'), DNA (5'-D(*GP*GP*TP*CP*TP*AP*AP*AP*CP*GP*TP*CP*GP*TP*AP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*GP*CP*AP*TP*TP*TP*G)-3'), ... | Authors: | Mak, A.N.S, Takeuchi, R, Edgell, D.R, Stoddard, B.L. | Deposit date: | 2011-03-22 | Release date: | 2011-07-20 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.704 Å) | Cite: | Tapping natural reservoirs of homing endonucleases for targeted gene modification. Proc.Natl.Acad.Sci.USA, 108, 2011
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3UGM
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![BU of 3ugm by Molmil](/molmil-images/mine/3ugm) | Structure of TAL effector PthXo1 bound to its DNA target | Descriptor: | DNA-1, DNA-2, TAL effector AvrBs3/PthA | Authors: | Mak, A.N.S, Bradley, P, Cernadas, R.A, Bogdanove, A.J, Stoddard, B.L. | Deposit date: | 2011-11-02 | Release date: | 2012-01-04 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | The Crystal Structure of TAL Effector PthXo1 Bound to Its DNA Target. Science, 335, 2012
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1IDD
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![BU of 1idd by Molmil](/molmil-images/mine/1idd) | ISOCITRATE DEHYDROGENASE Y160F MUTANT APO ENZYME | Descriptor: | ISOCITRATE DEHYDROGENASE | Authors: | Lee, M.E, Dyer, D.H, Klein, O.D, Bolduc, J.M, Stoddard, B.L, Koshland Junior, D.E. | Deposit date: | 1995-01-18 | Release date: | 1996-03-08 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Mutagenesis and Laue structures of enzyme intermediates: isocitrate dehydrogenase. Science, 268, 1995
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1K70
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![BU of 1k70 by Molmil](/molmil-images/mine/1k70) | The Structure of Escherichia coli Cytosine Deaminase bound to 4-Hydroxy-3,4-Dihydro-1H-Pyrimidin-2-one | Descriptor: | 4-HYDROXY-3,4-DIHYDRO-1H-PYRIMIDIN-2-ONE, Cytosine Deaminase, FE (III) ION | Authors: | Ireton, G.C, McDermott, G, Black, M.E, Stoddard, B.L. | Deposit date: | 2001-10-17 | Release date: | 2002-02-06 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | The structure of Escherichia coli cytosine deaminase. J.Mol.Biol., 315, 2002
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1A73
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![BU of 1a73 by Molmil](/molmil-images/mine/1a73) | INTRON-ENCODED ENDONUCLEASE I-PPOI COMPLEXED WITH DNA | Descriptor: | DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), INTRON 3 (I-PPO) ENCODED ENDONUCLEASE, ... | Authors: | Flick, K.E, Monnat Junior, R.J, Stoddard, B.L. | Deposit date: | 1998-03-19 | Release date: | 1998-10-14 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI. Nature, 394, 1998
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4YIS
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![BU of 4yis by Molmil](/molmil-images/mine/4yis) | Crystal Structure of LAGLIDADG Meganuclease I-CpaMI Bound to Uncleaved DNA | Descriptor: | 1,2-ETHANEDIOL, CALCIUM ION, DNA (28-MER), ... | Authors: | Hallinan, J.P, Kaiser, B.K, Stoddard, B.L. | Deposit date: | 2015-03-02 | Release date: | 2016-03-23 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (2.89 Å) | Cite: | Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity. Structure, 24, 2016
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4YIT
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![BU of 4yit by Molmil](/molmil-images/mine/4yit) | |
4YHX
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![BU of 4yhx by Molmil](/molmil-images/mine/4yhx) | |
1K6W
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![BU of 1k6w by Molmil](/molmil-images/mine/1k6w) | The Structure of Escherichia coli Cytosine Deaminase | Descriptor: | Cytosine Deaminase, FE (III) ION | Authors: | Ireton, G.C, McDermott, G, Black, M.E, Stoddard, B.L. | Deposit date: | 2001-10-17 | Release date: | 2002-02-06 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | The structure of Escherichia coli cytosine deaminase. J.Mol.Biol., 315, 2002
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4YXY
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![BU of 4yxy by Molmil](/molmil-images/mine/4yxy) | |
4Z1Z
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![BU of 4z1z by Molmil](/molmil-images/mine/4z1z) | |
4Z20
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![BU of 4z20 by Molmil](/molmil-images/mine/4z20) | |
4YXX
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![BU of 4yxx by Molmil](/molmil-images/mine/4yxx) | |
4YXZ
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![BU of 4yxz by Molmil](/molmil-images/mine/4yxz) | |
4YY5
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![BU of 4yy5 by Molmil](/molmil-images/mine/4yy5) | |
4YY2
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![BU of 4yy2 by Molmil](/molmil-images/mine/4yy2) | |
1LTQ
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![BU of 1ltq by Molmil](/molmil-images/mine/1ltq) | CRYSTAL STRUCTURE OF T4 POLYNUCLEOTIDE KINASE | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, POLYNUCLEOTIDE KINASE | Authors: | Galburt, E.A, Pelletier, J, Wilson, G, Stoddard, B.L. | Deposit date: | 2002-05-20 | Release date: | 2002-10-09 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.33 Å) | Cite: | Structure of a tRNA repair enzyme and molecular biology workhorse: T4 polynucleotide kinase. Structure, 10, 2002
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1IDC
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![BU of 1idc by Molmil](/molmil-images/mine/1idc) | ISOCITRATE DEHYDROGENASE FROM E.COLI (MUTANT K230M), STEADY-STATE INTERMEDIATE COMPLEX DETERMINED BY LAUE CRYSTALLOGRAPHY | Descriptor: | 2-OXALOSUCCINIC ACID, ISOCITRATE DEHYDROGENASE, MAGNESIUM ION | Authors: | Bolduc, J.M, Dyer, D.H, Scott, W.G, Singer, P, Sweet, R.M, Koshland Junior, D.E, Stoddard, B.L. | Deposit date: | 1995-01-18 | Release date: | 1996-03-08 | Last modified: | 2021-11-03 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Mutagenesis and Laue structures of enzyme intermediates: isocitrate dehydrogenase. Science, 268, 1995
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1IDF
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![BU of 1idf by Molmil](/molmil-images/mine/1idf) | ISOCITRATE DEHYDROGENASE K230M MUTANT APO ENZYME | Descriptor: | ISOCITRATE DEHYDROGENASE | Authors: | Bolduc, J.M, Dyer, D.H, Scott, W.G, Singer, P, Sweet, R.M, Koshland Junior, D.E, Stoddard, B.L. | Deposit date: | 1995-01-18 | Release date: | 1996-03-08 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Mutagenesis and Laue structures of enzyme intermediates: isocitrate dehydrogenase. Science, 268, 1995
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1M5X
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![BU of 1m5x by Molmil](/molmil-images/mine/1m5x) | Crystal structure of the homing endonuclease I-MsoI bound to its DNA substrate | Descriptor: | 5'-D(*CP*GP*GP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*TP*TP*CP*TP*GP*C)-3', 5'-D(*GP*CP*AP*GP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*CP*CP*G)-3', CALCIUM ION, ... | Authors: | Chevalier, B, Turmel, M, Lemieux, C, Monnat, R.J, Stoddard, B.L. | Deposit date: | 2002-07-10 | Release date: | 2003-06-03 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Flexible DNA Target Site Recognition by Divergent Homing Endonuclease Isoschizomers I-CreI and I-MsoI J.Mol.Biol., 329, 2003
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7RKC
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![BU of 7rkc by Molmil](/molmil-images/mine/7rkc) | Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633 | Descriptor: | ACETATE ION, D_3_633 | Authors: | Kennedy, M.A, Stoddard, B.L, Hicks, D.R, Bera, A.K. | Deposit date: | 2021-07-22 | Release date: | 2022-05-18 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | De novo design of protein homodimers containing tunable symmetric protein pockets. Proc.Natl.Acad.Sci.USA, 119, 2022
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1U0D
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![BU of 1u0d by Molmil](/molmil-images/mine/1u0d) | Y33H Mutant of Homing endonuclease I-CreI | Descriptor: | 5'-D(*CP*GP*GP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*TP*TP*TP*CP*GP*C)-3', 5'-D(*GP*CP*GP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*CP*CP*G)-3', DNA endonuclease I-CreI | Authors: | Sussman, D, Chadsey, M, Fauce, S, Engel, A, Bruett, A, Monnat, R, Stoddard, B.L, Seligman, L.M. | Deposit date: | 2004-07-13 | Release date: | 2004-11-02 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Isolation and characterization of new homing endonuclease specificities at individual target site positions. J.Mol.Biol., 342, 2004
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1RC8
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![BU of 1rc8 by Molmil](/molmil-images/mine/1rc8) | T4 Polynucleotide Kinase bound to 5'-GTCAC-3' ssDNA | Descriptor: | 5'-D(*GP*TP*CP*AP*C)-3', ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, ... | Authors: | Eastberg, J.H, Pelletier, J, Stoddard, B.L. | Deposit date: | 2003-11-03 | Release date: | 2004-02-17 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.75 Å) | Cite: | Recognition of DNA substrates by T4 bacteriophage polynucleotide kinase. Nucleic Acids Res., 32, 2004
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1U3E
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![BU of 1u3e by Molmil](/molmil-images/mine/1u3e) | DNA binding and cleavage by the HNH homing endonuclease I-HmuI | Descriptor: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 36-MER, ... | Authors: | Shen, B.W, Landthaler, M, Shub, D.A, Stoddard, B.L. | Deposit date: | 2004-07-21 | Release date: | 2004-08-31 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.92 Å) | Cite: | DNA Binding and Cleavage by the HNH Homing Endonuclease I-HmuI. J.Mol.Biol., 342, 2004
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1RA0
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![BU of 1ra0 by Molmil](/molmil-images/mine/1ra0) | Bacterial cytosine deaminase D314G mutant bound to 5-fluoro-4-(S)-hydroxy-3,4-dihydropyrimidine. | Descriptor: | (4S)-5-FLUORO-4-HYDROXY-3,4-DIHYDROPYRIMIDIN-2(1H)-ONE, Cytosine deaminase, FE (III) ION | Authors: | Mahan, S.D, Ireton, G.C, Stoddard, B.L, Black, M.E. | Deposit date: | 2003-10-31 | Release date: | 2004-10-05 | Last modified: | 2023-08-23 | Method: | X-RAY DIFFRACTION (1.12 Å) | Cite: | Random mutagenesis and selection of Escherichia coli cytosine deaminase for cancer gene therapy. Protein Eng.Des.Sel., 17, 2004
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