3RUI
 
 | | Crystal structure of Atg7C-Atg8 complex | | Descriptor: | Autophagy-related protein 8, Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION | | Authors: | Hong, S.B, Kim, B.W, Song, H.K. | | Deposit date: | 2011-05-05 | | Release date: | 2011-11-23 | | Last modified: | 2013-07-03 | | Method: | X-RAY DIFFRACTION (1.906 Å) | | Cite: | Insights into noncanonical E1 enzyme activation from the structure of autophagic E1 Atg7 with Atg8.
Nat.Struct.Mol.Biol., 18, 2011
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3TT7
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3TT6
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3SL7
 | | Crystal structure of CBS-pair protein, CBSX2 from Arabidopsis thaliana | | Descriptor: | ACETATE ION, CBS domain-containing protein CBSX2, GLYCEROL | | Authors: | Jeong, B.-C, Lee, M.-R, Song, H.K. | | Deposit date: | 2011-06-24 | | Release date: | 2011-11-09 | | Last modified: | 2013-10-09 | | Method: | X-RAY DIFFRACTION (1.905 Å) | | Cite: | Single cystathionine beta-synthase domain-containing proteins modulate development by regulating the thioredoxin system in Arabidopsis
Plant Cell, 23, 2011
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5BZ6
 | | Crystal structure of the N-terminal domain single mutant (S92A) of the human mitochondrial calcium uniporter fused with T4 lysozyme | | Descriptor: | Lysozyme,Calcium uniporter protein, mitochondrial, SULFATE ION | | Authors: | Lee, Y, Min, C.K, Kim, T.G, Song, H.K, Lim, Y, Kim, D, Shin, K, Kang, M, Kang, J.Y, Youn, H.-S, Lee, J.-G, An, J.Y, Park, K.R, Lim, J.J, Kim, J.H, Kim, J.H, Park, Z.Y, Kim, Y.-S, Wang, J, Kim, D.H, Eom, S.H. | | Deposit date: | 2015-06-11 | | Release date: | 2015-09-16 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (2.75 Å) | | Cite: | Structure and function of the N-terminal domain of the human mitochondrial calcium uniporter.
Embo Rep., 16, 2015
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5B62
 | | Crystal structure of N-terminal amidase with Asn-Glu-Ala peptide | | Descriptor: | ASN-GLU-ALA, Nta1p | | Authors: | Kim, M.K, Oh, S.-J, Lee, B.-G, Song, H.K. | | Deposit date: | 2016-05-24 | | Release date: | 2017-01-11 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (3.042 Å) | | Cite: | Structural basis for dual specificity of yeast N-terminal amidase in the N-end rule pathway.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
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7FEQ
 | | Cryo-EM structure of apo BsClpP at pH 6.5 | | Descriptor: | ATP-dependent Clp protease proteolytic subunit | | Authors: | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | | Deposit date: | 2021-07-21 | | Release date: | 2022-07-06 | | Last modified: | 2024-06-12 | | Method: | ELECTRON MICROSCOPY (3.2 Å) | | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7FES
 | | Cryo-EM structure of apo BsClpP at pH 4.2 | | Descriptor: | ATP-dependent Clp protease proteolytic subunit | | Authors: | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | | Deposit date: | 2021-07-21 | | Release date: | 2022-07-06 | | Last modified: | 2024-06-12 | | Method: | ELECTRON MICROSCOPY (3.4 Å) | | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7FER
 | | Cryo-EM structure of BsClpP-ADEP1 complex at pH 4.2 | | Descriptor: | ADEP1, ATP-dependent Clp protease proteolytic subunit | | Authors: | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | | Deposit date: | 2021-07-21 | | Release date: | 2022-07-06 | | Last modified: | 2022-07-20 | | Method: | ELECTRON MICROSCOPY (3.4 Å) | | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7FEP
 | | Cryo-EM structure of BsClpP-ADEP1 complex at pH 6.5 | | Descriptor: | ADEP1, ATP-dependent Clp protease proteolytic subunit | | Authors: | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | | Deposit date: | 2021-07-21 | | Release date: | 2022-07-06 | | Last modified: | 2022-07-20 | | Method: | ELECTRON MICROSCOPY (3.1 Å) | | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7XZ0
 | | TRIM E3 ubiquitin ligase | | Descriptor: | Tripartite motif-containing protein 72, ZINC ION | | Authors: | Park, S.H, Song, H.K. | | Deposit date: | 2022-06-02 | | Release date: | 2023-07-12 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (3.28 Å) | | Cite: | Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol., 30, 2023
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7XV2
 | | TRIM E3 ubiquitin ligase | | Descriptor: | Tripartite motif-containing protein 72, ZINC ION | | Authors: | Park, S.H, Song, H.K. | | Deposit date: | 2022-05-20 | | Release date: | 2023-05-24 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.75 Å) | | Cite: | Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol., 30, 2023
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7XYZ
 | | TRIM E3 ubiquitin ligase | | Descriptor: | Tripartite motif-containing protein 72, ZINC ION | | Authors: | Park, S.H, Song, H.K. | | Deposit date: | 2022-06-02 | | Release date: | 2023-07-12 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (4.62 Å) | | Cite: | Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol., 30, 2023
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7XZ2
 | | TRIM E3 ubiquitin ligase | | Descriptor: | Tripartite motif-containing protein 72, ZINC ION | | Authors: | Park, S.H, Song, H.K. | | Deposit date: | 2022-06-02 | | Release date: | 2023-07-12 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (3.5 Å) | | Cite: | Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol., 30, 2023
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7XYY
 | | TRIM E3 ubiquitin ligase WT | | Descriptor: | Tripartite motif-containing protein 72, ZINC ION | | Authors: | Park, S.H, Song, H.K. | | Deposit date: | 2022-06-02 | | Release date: | 2023-07-12 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (7.1 Å) | | Cite: | Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol., 30, 2023
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7XZ1
 | | TRIM E3 ubiquitin ligase | | Descriptor: | Tripartite motif-containing protein 72, ZINC ION | | Authors: | Park, S.H, Song, H.K. | | Deposit date: | 2022-06-02 | | Release date: | 2023-07-12 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (5.2 Å) | | Cite: | Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane.
Nat.Struct.Mol.Biol., 30, 2023
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6ICO
 | | Pseudomonas putida CBB5 NdmA with theophylline | | Descriptor: | COBALT (II) ION, FE2/S2 (INORGANIC) CLUSTER, Methylxanthine N1-demethylase NdmA, ... | | Authors: | Kim, J.H, Kim, B.H, Kang, S.Y, Song, H.K. | | Deposit date: | 2018-09-06 | | Release date: | 2019-09-04 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (1.85 Å) | | Cite: | Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex.
J.Mol.Biol., 431, 2019
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6ICP
 | | Pseudomonas putida CBB5 NdmA QL mutant with caffeine | | Descriptor: | CAFFEINE, FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, ... | | Authors: | Kim, J.H, Kim, B.H, Kang, S.Y, Song, H.K. | | Deposit date: | 2018-09-06 | | Release date: | 2019-09-04 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex.
J.Mol.Biol., 431, 2019
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6ICL
 | | Pseudomonas putida CBB5 NdmB | | Descriptor: | FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, Methylxanthine N3-demethylase NdmB | | Authors: | Kim, J.H, Kim, B.H, Kang, S.Y, Song, H.K. | | Deposit date: | 2018-09-06 | | Release date: | 2019-09-04 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex.
J.Mol.Biol., 431, 2019
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6ICQ
 | | Pseudomonas putida CBB5 NdmA QL mutant with theobromine | | Descriptor: | FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, Methylxanthine N1-demethylase NdmA, ... | | Authors: | Kim, J.H, Kim, B.H, Kang, S.Y, Song, H.K. | | Deposit date: | 2018-09-06 | | Release date: | 2019-09-04 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex.
J.Mol.Biol., 431, 2019
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6ICM
 | | Pseudomonas putida CBB5 NdmA with ferredoxin domain of NdmD | | Descriptor: | FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, Methylxanthine N1-demethylase NdmA, ... | | Authors: | Kim, J.H, Kim, B.H, Kang, S.Y, Song, H.K. | | Deposit date: | 2018-09-06 | | Release date: | 2019-09-04 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (2.961 Å) | | Cite: | Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex.
J.Mol.Biol., 431, 2019
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6ICK
 | | Pseudomonas putida CBB5 NdmA | | Descriptor: | FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, Methylxanthine N1-demethylase NdmA | | Authors: | Kim, J.H, Kim, B.H, Kang, S.Y, Song, H.K. | | Deposit date: | 2018-09-06 | | Release date: | 2019-09-04 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (1.952 Å) | | Cite: | Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex.
J.Mol.Biol., 431, 2019
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6ICN
 | | Pseudomonas putida CBB5 NdmA with caffeine | | Descriptor: | CAFFEINE, COBALT (II) ION, FE2/S2 (INORGANIC) CLUSTER, ... | | Authors: | Kim, J.H, Kim, B.H, Kang, S.Y, Song, H.K. | | Deposit date: | 2018-09-06 | | Release date: | 2019-09-04 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Structural and Mechanistic Insights into Caffeine Degradation by the Bacterial N-Demethylase Complex.
J.Mol.Biol., 431, 2019
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6KHZ
 | | p62/SQSTM1 ZZ domain with Gly-peptide | | Descriptor: | Sequestosome-1, ZINC ION | | Authors: | Kwon, D.H, Kim, L, Song, H.K. | | Deposit date: | 2019-07-16 | | Release date: | 2020-01-22 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway.
J.Biol.Chem., 295, 2020
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6KGI
 | | RLGS-yUbr1 Ubr box | | Descriptor: | E3 ubiquitin-protein ligase UBR1, ZINC ION | | Authors: | Heo, J, Kwon, D.H, Kim, L, Song, H.K. | | Deposit date: | 2019-07-11 | | Release date: | 2020-01-22 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.04 Å) | | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway.
J.Biol.Chem., 295, 2020
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