Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1971 results

6PL5
DownloadVisualize
BU of 6pl5 by Molmil
Structural coordination of polymerization and crosslinking by a peptidoglycan synthase complex
Descriptor: Penicillin-binding protein 2/cell division protein FtsI, Peptidoglycan glycosyltransferase RodA, Unknown peptide
Authors:Sjodt, M, Rohs, P.D.A, Erlandson, S.C, Zheng, S, Rudner, D.Z, Bernhardt, T.G, Kruse, A.C.
Deposit date:2019-06-30
Release date:2020-03-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural coordination of polymerization and crosslinking by a SEDS-bPBP peptidoglycan synthase complex.
Nat Microbiol, 5, 2020
6PP7
DownloadVisualize
BU of 6pp7 by Molmil
ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpX, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Fei, X, Jenni, S, Harrison, S.C, Sauer, R.T.
Deposit date:2019-07-05
Release date:2020-03-11
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.05 Å)
Cite:Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate.
Elife, 9, 2020
7ALJ
DownloadVisualize
BU of 7alj by Molmil
Structure of Drosophila Notch EGF domains 11-13
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neurogenic locus Notch protein, ...
Authors:Suckling, R, Johnson, S, Lea, S.M.
Deposit date:2020-10-06
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:The conserved C2 phospholipid-binding domain in Delta contributes to robust Notch signalling.
Embo Rep., 22, 2021
6POD
DownloadVisualize
BU of 6pod by Molmil
ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpX, ATP-dependent Clp protease proteolytic subunit, ...
Authors:Fei, X, Jenni, S, Harrison, S.C, Sauer, R.T.
Deposit date:2019-07-03
Release date:2020-03-11
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.05 Å)
Cite:Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate.
Elife, 9, 2020
6PP5
DownloadVisualize
BU of 6pp5 by Molmil
ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpX, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Fei, X, Jenni, S, Harrison, S.C, Sauer, R.T.
Deposit date:2019-07-05
Release date:2020-03-11
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.98 Å)
Cite:Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate.
Elife, 9, 2020
6PO3
DownloadVisualize
BU of 6po3 by Molmil
ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpX, ATP-dependent Clp protease proteolytic subunit, ...
Authors:Fei, X, Jenni, S, Harrison, S.C, Sauer, R.T.
Deposit date:2019-07-03
Release date:2020-03-11
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.28 Å)
Cite:Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate.
Elife, 9, 2020
1TFP
DownloadVisualize
BU of 1tfp by Molmil
TRANSTHYRETIN (FORMERLY KNOWN AS PREALBUMIN)
Descriptor: SULFATE ION, TRANSTHYRETIN
Authors:Sunde, M, Richardson, S.J, Chang, L, Pettersson, T.M, Schreiber, G, Blake, C.C.F.
Deposit date:1996-01-05
Release date:1996-06-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystal structure of transthyretin from chicken.
Eur.J.Biochem., 236, 1996
6POS
DownloadVisualize
BU of 6pos by Molmil
ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpX, ATP-dependent Clp protease proteolytic subunit, ...
Authors:Fei, X, Jenni, S, Harrison, S.C, Sauer, R.T.
Deposit date:2019-07-05
Release date:2020-03-11
Method:ELECTRON MICROSCOPY (4.12 Å)
Cite:Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate.
Elife, 9, 2020
6PO1
DownloadVisualize
BU of 6po1 by Molmil
ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpX, ATP-dependent Clp protease proteolytic subunit, ...
Authors:Fei, X, Jenni, S, Harrison, S.C, Sauer, R.T.
Deposit date:2019-07-03
Release date:2020-03-11
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate.
Elife, 9, 2020
6PP8
DownloadVisualize
BU of 6pp8 by Molmil
ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpX, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Fei, X, Jenni, S, Harrison, S.C, Sauer, R.T.
Deposit date:2019-07-05
Release date:2020-03-11
Method:ELECTRON MICROSCOPY (4.12 Å)
Cite:Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate.
Elife, 9, 2020
6PP6
DownloadVisualize
BU of 6pp6 by Molmil
ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpX, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Fei, X, Jenni, S, Harrison, S.C, Sauer, R.T.
Deposit date:2019-07-05
Release date:2020-03-11
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.28 Å)
Cite:Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate.
Elife, 9, 2020
2W80
DownloadVisualize
BU of 2w80 by Molmil
Structure of a complex between Neisseria meningitidis factor H binding protein and CCPs 6-7 of human complement factor H
Descriptor: COMPLEMENT FACTOR H, FACTOR H BINDING PROTEIN
Authors:Schneider, M.C, Prosser, B.E, Caesar, J.J.E, Kugelberg, E, Li, S, Zhang, Q, Quoraishi, S, Lovett, J.E, Deane, J.E, Sim, R.B, Roversi, P, Johnson, S, Tang, C.M, Lea, S.M.
Deposit date:2009-01-08
Release date:2009-03-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Neisseria Meningitidis Recruits Factor H Using Protein Mimicry of Host Carbohydrates.
Nature, 458, 2009
7AMY
DownloadVisualize
BU of 7amy by Molmil
Nonameric cytoplasmic domain of FlhA from Vibrio parahaemolyticus
Descriptor: Flagellar biosynthesis protein FlhA
Authors:Kuhlen, L, Johnson, S, Lea, S.
Deposit date:2020-10-09
Release date:2021-06-02
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Nonameric structures of the cytoplasmic domain of FlhA and SctV in the context of the full-length protein.
Plos One, 16, 2021
5DFF
DownloadVisualize
BU of 5dff by Molmil
Human APE1 product complex
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Freudenthal, B.D, Wilson, S.H.
Deposit date:2015-08-26
Release date:2015-10-14
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Capturing snapshots of APE1 processing DNA damage.
Nat.Struct.Mol.Biol., 22, 2015
2VT1
DownloadVisualize
BU of 2vt1 by Molmil
Crystal structure of the cytoplasmic domain of Spa40, the specificity switch for the Shigella flexneri Type III Secretion System
Descriptor: SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAS
Authors:Deane, J.E, Graham, S.C, Mitchell, E.P, Flot, D, Johnson, S, Lea, S.M.
Deposit date:2008-05-08
Release date:2008-05-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Spa40, the Specificity Switch for the Shigella Flexneri Type III Secretion System
Mol.Microbiol., 69, 2008
7ALK
DownloadVisualize
BU of 7alk by Molmil
Structure of Drosophila C2-DSL-EGF1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Neurogenic locus protein delta, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Suckling, R, Johnson, S, Lea, S.M.
Deposit date:2020-10-06
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:The conserved C2 phospholipid-binding domain in Delta contributes to robust Notch signalling.
Embo Rep., 22, 2021
7ALT
DownloadVisualize
BU of 7alt by Molmil
Structure of Drosophila Serrate C2-DSL-EGF1-EGF2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Suckling, R, Johnson, S, Lea, S.M.
Deposit date:2020-10-07
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:The conserved C2 phospholipid-binding domain in Delta contributes to robust Notch signalling.
Embo Rep., 22, 2021
5DFH
DownloadVisualize
BU of 5dfh by Molmil
Human APE1 mismatch product complex
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-3'), DNA (5'-D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ...
Authors:Freudenthal, B.D, Wilson, S.H.
Deposit date:2015-08-26
Release date:2015-10-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.949 Å)
Cite:Capturing snapshots of APE1 processing DNA damage.
Nat.Struct.Mol.Biol., 22, 2015
5DFJ
DownloadVisualize
BU of 5dfj by Molmil
Human APE1 E96Q/D210N mismatch substrate complex
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*(3DR)P*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3'), ...
Authors:Freudenthal, B.D, Wilson, S.H.
Deposit date:2015-08-26
Release date:2015-10-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Capturing snapshots of APE1 processing DNA damage.
Nat.Struct.Mol.Biol., 22, 2015
6JPV
DownloadVisualize
BU of 6jpv by Molmil
Structural analysis of AIMP2-DX2 and HSP70 interaction
Descriptor: Heat shock 70 kDa protein 1A,Aminoacyl tRNA synthase complex-interacting multifunctional protein 2
Authors:Cho, H.Y, Son, S.Y, Jeon, Y.H.
Deposit date:2019-03-28
Release date:2019-10-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.15000653 Å)
Cite:Targeting the interaction of AIMP2-DX2 with HSP70 suppresses cancer development.
Nat.Chem.Biol., 16, 2020
6K39
DownloadVisualize
BU of 6k39 by Molmil
Structural analysis of AIMP2-DX2 and HSP70 interaction
Descriptor: Heat shock 70 kDa protein 1A,Aminoacyl tRNA synthase complex-interacting multifunctional protein 2
Authors:Cho, H.Y, Son, S.Y, Jeon, Y.H.
Deposit date:2019-05-16
Release date:2019-10-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3981427 Å)
Cite:Targeting the interaction of AIMP2-DX2 with HSP70 suppresses cancer development.
Nat.Chem.Biol., 16, 2020
7ALW
DownloadVisualize
BU of 7alw by Molmil
Nonameric cytoplasmic domain of SctV from Yersinia enterocolitica
Descriptor: Low calcium response protein
Authors:Kuhlen, L, Johnson, S.
Deposit date:2020-10-07
Release date:2021-06-02
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Nonameric structures of the cytoplasmic domain of FlhA and SctV in the context of the full-length protein.
Plos One, 16, 2021
4V7Q
DownloadVisualize
BU of 4v7q by Molmil
Atomic model of an infectious rotavirus particle
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Core scaffold protein, ...
Authors:Settembre, E.C, Chen, J.Z, Dormitzer, P.R, Grigorieff, N, Harrison, S.C.
Deposit date:2010-05-13
Release date:2014-07-09
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Atomic model of an infectious rotavirus particle.
Embo J., 30, 2011
6PPE
DownloadVisualize
BU of 6ppe by Molmil
ClpP and ClpX IGF loop in ClpX-ClpP complex with D7 symmetry
Descriptor: ATP-dependent Clp protease ATP-binding subunit ClpX, ATP-dependent Clp protease proteolytic subunit
Authors:Fei, X, Jenni, S, Harrison, S.C, Sauer, R.T.
Deposit date:2019-07-06
Release date:2020-03-11
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate.
Elife, 9, 2020
7B29
DownloadVisualize
BU of 7b29 by Molmil
Complement inhibitor CirpA4 from Rhipicephalus appendiculatus
Descriptor: CADMIUM ION, CHLORIDE ION, CirpA4
Authors:Lea, S.M, Johnson, S, Braunger, K.
Deposit date:2020-11-26
Release date:2021-12-08
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structure and function of a family of tick-derived complement inhibitors targeting properdin.
Nat Commun, 13, 2022

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon