PDB Search results for query - Protein Data Bank Japan

PDB: 225 results

The apo structure of human glycinamide ribonucleotide transformylase
Descriptor:	GLYCEROL, Phosphoribosylglycinamide formyltransferase
Authors:	Dahms, T.E, Sainz, G, Giroux, E.L, Caperelli, C.A, Smith, J.L.
Deposit date:	2005-05-09
Release date:	2005-08-23
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	The apo and ternary complex structures of a chemotherapeutic target: human glycinamide ribonucleotide transformylase. Biochemistry, 44, 2005

1RFS

RIESKE SOLUBLE FRAGMENT FROM SPINACH
Descriptor:	FE2/S2 (INORGANIC) CLUSTER, RIESKE PROTEIN
Authors:	Carrell, C.J, Zhang, H, Cramer, W.A, Smith, J.L.
Deposit date:	1997-08-14
Release date:	1998-01-28
Last modified:	2011-07-13
Method:	X-RAY DIFFRACTION (1.83 Å)
Cite:	Biological identity and diversity in photosynthesis and respiration: structure of the lumen-side domain of the chloroplast Rieske protein. Structure, 5, 1997

1VF5

Crystal Structure of Cytochrome b6f Complex from M.laminosus
Descriptor:	(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE, 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE, 8-HYDROXY-5,7-DIMETHOXY-3-METHYL-2-TRIDECYL-4H-CHROMEN-4-ONE, ...
Authors:	Kurisu, G, Zhang, H, Smith, J.L, Cramer, W.A.
Deposit date:	2004-04-08
Release date:	2004-04-20
Last modified:	2023-12-27
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Structure of the Cytochrome B6F Complex of Oxygenic Photosynthesis: Tuning the Cavity Science, 302, 2003

1OX5

TOWARDS UNDERSTANDING THE MECHANISM OF THE COMPLEX CYCLIZATION REACTION CATALYZED BY IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE
Descriptor:	Imidazole glycerol phosphate synthase hisHF, NICKEL (II) ION, PHOSPHORIC ACID MONO-[5-({[5-CARBAMOYL-3-(5-PHOSPHONOOXY-5-DEOXY-RIBOFURANOSYL)- 3H-IMIDAZOL-4-YLAMINO]-METHYL}-AMINO)-2,3,4-TRIHYDROXY-PENTYL] ESTER
Authors:	Chaudhuri, B.N, Smith, J.L.
Deposit date:	2003-04-01
Release date:	2003-06-17
Last modified:	2023-08-16
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Towards Understanding the Mechanism of the Complex Cyclization Reaction Catalyzed by Imidazole Glycerophosphate Synthase:Crystal Structures of a Ternary Complex and the Free Enzyme Biochemistry, 42, 2003

2XCL

Nucleotide-bound Structures of Bacillus subtilis Glycinamide Ribonucleotide Synthetase
Descriptor:	MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PHOSPHORIBOSYLAMINE--GLYCINE LIGASE
Authors:	Bertrand, J.A, Chen, S, Zalkin, H, Smith, J.L.
Deposit date:	2010-04-23
Release date:	2011-03-23
Last modified:	2011-07-13
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Nucleotide-Bound Structures of Bacillus Subtilis Glycinamide Ribonucleotide Synthetase To be Published

8SY2

Peanut USP-type BURP Domain Peptide Cyclase
Descriptor:	BURP domain-containing protein
Authors:	Mydy, L.S, Kersten, R.D, Smith, J.L.
Deposit date:	2023-05-24
Release date:	2024-02-14
Last modified:	2024-10-16
Method:	X-RAY DIFFRACTION (2.67 Å)
Cite:	An intramolecular macrocyclase in plant ribosomal peptide biosynthesis. Nat.Chem.Biol., 20, 2024

8SY3

Copper Complex of Peanut USP-type BURP Domain Peptide Cyclase
Descriptor:	BURP domain-containing protein, COPPER (II) ION
Authors:	Mydy, L.S, Kersten, R.D, Smith, J.L.
Deposit date:	2023-05-24
Release date:	2024-02-14
Last modified:	2024-10-16
Method:	X-RAY DIFFRACTION (3.2 Å)
Cite:	An intramolecular macrocyclase in plant ribosomal peptide biosynthesis. Nat.Chem.Biol., 20, 2024

1OX6

TOWARDS UNDERSTANDING THE MECHANISM OF THE COMPLEX CYCLIZATION REACTION CATALYZED BY IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE
Descriptor:	Imidazole glycerol phosphate synthase hisHF, NICKEL (II) ION, PYROPHOSPHATE 2-, ...
Authors:	Chaudhuri, B.N, Smith, J.L.
Deposit date:	2003-04-01
Release date:	2003-06-17
Last modified:	2023-08-16
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Towards Understanding the Mechanism of the Complex Cyclization Reaction Catalyzed by Imidazole Glycerophosphate Synthase: Crystal Structures of a Ternary Complex and the Free Enzyme Biochemistry, 42, 2003

2XD4

Nucleotide-bound Structures of Bacillus subtilis Glycinamide Ribonucleotide Synthetase
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHORIBOSYLAMINE--GLYCINE LIGASE
Authors:	Bertrand, J.A, Chen, S, Zalkin, H, Smith, J.L.
Deposit date:	2010-04-29
Release date:	2011-03-23
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (2.65 Å)
Cite:	Nucleotide-Bound Structures of Bacillus Subtilis Glycinamide Ribonucleotide Synthetase To be Published

1OX4

TOWARDS UNDERSTANDING THE MECHANISM OF THE COMPLEX CYCLIZATION REACTION CATALYZED BY IMIDAZOLE GLYCEROPHOSPHATE SYNTHASE
Descriptor:	Imidazole glycerol phosphate synthase hisHF, NICKEL (II) ION, PYROPHOSPHATE 2-, ...
Authors:	Chaudhuri, B.N, Smith, J.L.
Deposit date:	2003-04-01
Release date:	2003-06-17
Last modified:	2023-08-16
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Towards Understanding the Mechanism of the Complex Cyclization Reaction Catalyzed by Imidazole Glycerophosphate Synthase: Crystal Structures of a Ternary Complex and the Free Enzyme Biochemistry, 42, 2003

7R7G

Synechococcus Olefin Synthase FAAL domain A229I/R336A in complex with palmitoyl adenylate and pyrophosphate
Descriptor:	ACETATE ION, MAGNESIUM ION, PYROPHOSPHATE 2-, ...
Authors:	Sikkema, A.P, Strugis, R.M, Smith, J.L.
Deposit date:	2021-06-24
Release date:	2022-07-06
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.25 Å)
Cite:	An electrostatic fatty acid selection mechanism by the Olefin Synthase FAAL domain from Synechococcus sp. PCC7002 To Be Published

7R7F

Synechococcus Olefin Synthase FAAL domain R336A in complex with stearoyl adenylate and pyrophosphate
Descriptor:	ACETATE ION, MAGNESIUM ION, PYROPHOSPHATE 2-, ...
Authors:	Sikkema, A.P, Strugis, R.M, Smith, J.L.
Deposit date:	2021-06-24
Release date:	2022-07-06
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.13 Å)
Cite:	An electrostatic fatty acid selection mechanism by the Olefin Synthase FAAL domain from Synechococcus sp. PCC7002 To Be Published

7R7E

Synechococcus Olefin Synthase FAAL domain in complex with AMP and pyrophosphate
Descriptor:	ACETATE ION, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:	Sikkema, A.P, Strugis, R.M, Smith, J.L.
Deposit date:	2021-06-24
Release date:	2022-07-06
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (1.99 Å)
Cite:	An electrostatic fatty acid selection mechanism by the Olefin Synthase FAAL domain from Synechococcus sp. PCC7002 To Be Published

4GBM

Sulfotransferase Domain from the Curacin Biosynthetic Pathway
Descriptor:	ADENOSINE-3'-5'-DIPHOSPHATE, CHLORIDE ION, CurM Sulfotransferase, ...
Authors:	McCarthy, J.G, Smith, J.L.
Deposit date:	2012-07-27
Release date:	2012-10-17
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (1.62 Å)
Cite:	Structural basis of functional group activation by sulfotransferases in complex metabolic pathways. Acs Chem.Biol., 7, 2012

4H5O

Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Pentamer Bound to Single-stranded RNA
Descriptor:	35-mer poly(U) RNA, Nucleocapsid protein
Authors:	Raymond, D.D, Smith, J.L.
Deposit date:	2012-09-18
Release date:	2012-11-07
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (3.9 Å)
Cite:	Phleboviruses encapsidate their genomes by sequestering RNA bases. Proc.Natl.Acad.Sci.USA, 109, 2012

4GOX

Sulfotransferase Domain from the Synechococcus PCC 7002 Olefin Synthase
Descriptor:	ADENOSINE-3'-5'-DIPHOSPHATE, Polyketide synthase
Authors:	McCarthy, J.G, Smith, J.L.
Deposit date:	2012-08-20
Release date:	2012-10-17
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (2.15 Å)
Cite:	Structural basis of functional group activation by sulfotransferases in complex metabolic pathways. Acs Chem.Biol., 7, 2012

4H5Q

Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer Bound to Single-stranded DNA
Descriptor:	30-mer poly(T) DNA, Nucleocapsid protein
Authors:	Raymond, D.D, Smith, J.L.
Deposit date:	2012-09-18
Release date:	2012-11-07
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Phleboviruses encapsidate their genomes by sequestering RNA bases. Proc.Natl.Acad.Sci.USA, 109, 2012

4H5L

Crystal Structure of Toscana Virus Nucleocapsid Protein Hexamer
Descriptor:	Nucleoprotein
Authors:	Raymond, D.D, Smith, J.L.
Deposit date:	2012-09-18
Release date:	2012-11-07
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (2.75 Å)
Cite:	Phleboviruses encapsidate their genomes by sequestering RNA bases. Proc.Natl.Acad.Sci.USA, 109, 2012

4H5P

Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Tetramer Bound to Single-stranded RNA
Descriptor:	28-mer poly(U) RNA, Nucleocapsid protein
Authors:	Raymond, D.D, Smith, J.L.
Deposit date:	2012-09-18
Release date:	2012-11-07
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (2.15 Å)
Cite:	Phleboviruses encapsidate their genomes by sequestering RNA bases. Proc.Natl.Acad.Sci.USA, 109, 2012

4H5M

Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer
Descriptor:	Nucleocapsid protein, SULFATE ION
Authors:	Raymond, D.D, Smith, J.L.
Deposit date:	2012-09-18
Release date:	2012-11-07
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (3.1 Å)
Cite:	Phleboviruses encapsidate their genomes by sequestering RNA bases. Proc.Natl.Acad.Sci.USA, 109, 2012

4HXY

PlmKR1-Ketoreductase from the first module of phoslactomycin biosynthesis in Streptomyces sp. HK803
Descriptor:	6-AMINOHEXANOIC ACID, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Plm1
Authors:	Whicher, J.R, Smith, J.L.
Deposit date:	2012-11-12
Release date:	2013-07-10
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.68 Å)
Cite:	Structural and Stereochemical Analysis of a Modular Polyketide Synthase Ketoreductase Domain Required for the Generation of a cis-Alkene. Chem.Biol., 20, 2013

4O6D

West Nile Virus Non-structural protein 1 (NS1) Form 1 crystal
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NS1, ...
Authors:	Akey, D.L, Smith, J.L.
Deposit date:	2013-12-20
Release date:	2014-02-19
Last modified:	2020-07-29
Method:	X-RAY DIFFRACTION (2.5936 Å)
Cite:	Flavivirus NS1 structures reveal surfaces for associations with membranes and the immune system. Science, 343, 2014

4O6B

Dengue Type2 Virus Non-structural protein 1 (NS1) Form 1 crystal
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Non-structural protein 1
Authors:	Akey, D.L, Smith, J.L.
Deposit date:	2013-12-20
Release date:	2014-02-19
Last modified:	2024-10-30
Method:	X-RAY DIFFRACTION (3.0005 Å)
Cite:	Flavivirus NS1 structures reveal surfaces for associations with membranes and the immune system. Science, 343, 2014

4MZ0

Structure of a ketosynthase-acyltransferase di-domain from module CurL of the curacin A polyketide synthase
Descriptor:	CALCIUM ION, CurL
Authors:	Whicher, J.R, Smaga, S.S, Smith, J.L.
Deposit date:	2013-09-28
Release date:	2014-01-29
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Cyanobacterial polyketide synthase docking domains: a tool for engineering natural product biosynthesis. Chem.Biol., 20, 2013

4O6C

West Nile Virus Non-structural protein 1 (NS1) Form 2 crystal
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, NS1, SULFATE ION
Authors:	Akey, D.L, Smith, J.L.
Deposit date:	2013-12-20
Release date:	2014-02-19
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (2.7508 Å)
Cite:	Flavivirus NS1 structures reveal surfaces for associations with membranes and the immune system. Science, 343, 2014

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Total results:	225
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Smith, J.L."