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PDB: 229 件

2CMM
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STRUCTURAL ANALYSIS OF THE MYOGLOBIN RECONSTITUTED WITH IRON PORPHINE
分子名称: CYANIDE ION, MYOGLOBIN, PORPHYRIN FE(III)
著者Sato, T, Tanaka, N, Moriyama, H, Igarashi, N, Neya, S, Funasaki, N, Iizuka, T, Shiro, Y.
登録日1993-12-24
公開日1994-01-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural analysis of the myoglobin reconstituted with iron porphine.
J.Biol.Chem., 268, 1993
2ZO6
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Crystal Structure of Kusabira-Cyan (KCY), a Cyan-Emitting GFP-Like Protein
分子名称: CYAN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN (KCY)
著者Kikuchi, A, Fukumura, E, Karasawa, S, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-05-06
公開日2009-05-12
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of a new cyan fluorescent protein and its hue-shifted variants
Biochemistry, 48, 2009
2ZF4
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Crystal Structure of VioE complexed with phenylpyruvic acid
分子名称: 3-PHENYLPYRUVIC ACID, Hypothetical protein VioE
著者Hirano, S, Shiro, Y, Nagano, S.
登録日2007-12-20
公開日2008-01-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Crystal structure of VioE, a key player in the construction of the molecular skeleton of violacein
To be Published
3A0V
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PAS domain of histidine kinase ThkA (TM1359) (SeMet, F486M/F489M)
分子名称: ETHANOL, Sensor protein
著者Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
登録日2009-03-24
公開日2009-10-20
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
3AG0
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Crystal structure of carbonmonoxy human cytoglobin
分子名称: CARBON MONOXIDE, Cytoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Makino, M, Sawai, H, Shiro, Y, Sugimoto, H.
登録日2010-03-17
公開日2011-02-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of the carbon monoxide complex of human cytoglobin
Proteins, 79, 2011
2ZZA
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Moritella profunda Dihydrofolate reductase complex with NADP+ and Folate
分子名称: Dihydrofolate reductase, FOLIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Hata, K, Tanaka, T, Murakami, C, Ohmae, E, Gekko, K, Shiro, Y, Akasaka, K.
登録日2009-02-06
公開日2010-02-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Moritella profunda Dihydrofolate reductase complex with NADP+ and Folate
To be Published
3A0S
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PAS domain of histidine kinase ThkA (TM1359)
分子名称: DI(HYDROXYETHYL)ETHER, Sensor protein, TETRAETHYLENE GLYCOL, ...
著者Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
登録日2009-03-24
公開日2009-10-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
3A0Y
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Catalytic domain of histidine kinase ThkA (TM1359) (nucleotide free form 3: 1,2-propanediol, orthorombic)
分子名称: Sensor protein
著者Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
登録日2009-03-25
公開日2009-10-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
3A0W
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Catalytic domain of histidine kinase ThkA (TM1359) for MAD phasing (nucleotide free form 2, orthorombic)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(ETHYLMERCURI-THIO)-BENZOIC ACID, ETHYL MERCURY ION, ...
著者Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
登録日2009-03-24
公開日2009-10-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
3A0X
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Catalytic domain of histidine kinase ThkA (TM1359) (nucleotide free form 1: ammomium phosphate, monoclinic)
分子名称: Sensor protein
著者Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
登録日2009-03-25
公開日2009-10-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
2ZF3
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Crystal Structure of VioE
分子名称: Hypothetical protein VioE
著者Hirano, S, Shiro, Y, Nagano, S.
登録日2007-12-20
公開日2008-01-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of VioE, a key player in the construction of the molecular skeleton of violacein
To be Published
2ZO7
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Crystal Structure of a Kusabira-Cyan Mutant (KCY-R1), a Cyan/Green-Emitting GFP-Like Protein
分子名称: CYAN/GREEN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN MUTANT (KCY-R1)
著者Kikuchi, A, Fukumura, E, Karasawa, S, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-05-06
公開日2009-05-12
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Crystal structure of a new cyan fluorescent protein and its hue-shifted variants
Biochemistry, 48, 2009
2Z6Z
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BU of 2z6z by Molmil
Crystal structure of a photoswitchable GFP-like protein Dronpa in the bright-state
分子名称: Fluorescent protein Dronpa
著者Kikuchi, A, Jeyakanthan, J, Taka, J, Shiro, Y, Mizuno, H, Miyawaki, A.
登録日2007-08-09
公開日2008-07-22
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Light-dependent regulation of structural flexibility in a photochromic fluorescent protein.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZMU
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Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 9.1
分子名称: Fluorescent protein
著者Kikuchi, A, Fukumura, E, Karasawa, S, Mizuno, H, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-04-21
公開日2008-10-21
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural Characterization of a Thiazoline-Containing Chromophore in an Orange Fluorescent Protein, Monomeric Kusabira Orange
Biochemistry, 47, 2008
2Z6X
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Crystal structure of 22G, the wild-type protein of the photoswitchable GFP-like protein Dronpa
分子名称: photochromic protein Dronpa
著者Kikuchi, A, Jeyakanthan, J, Taka, J, Shiro, Y, Mizuno, H, Miyawaki, A.
登録日2007-08-09
公開日2008-07-22
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Light-dependent regulation of structural flexibility in a photochromic fluorescent protein.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3A0U
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BU of 3a0u by Molmil
Crystal structure of response regulator protein TrrA (TM1360) from Thermotoga maritima in complex with Mg(2+)-BeF (wild type)
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Response regulator, ...
著者Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
登録日2009-03-24
公開日2009-10-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
3A10
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Crystal structure of response regulator protein TrrA (TM1360) from Thermotoga maritima in complex with Mg(2+)-BeF (SeMet, L89M)
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Response regulator, ...
著者Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
登録日2009-03-25
公開日2009-10-20
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
2Z6Y
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BU of 2z6y by Molmil
Crystal structure of a photoswitchable GFP-like protein Dronpa in the bright-state
分子名称: Fluorescent protein Dronpa
著者Kikuchi, A, Jeyakanthan, J, Taka, J, Shiro, Y, Mizuno, H, Miyawaki, A.
登録日2007-08-09
公開日2008-07-22
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Light-dependent regulation of structural flexibility in a photochromic fluorescent protein.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZMW
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BU of 2zmw by Molmil
Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 6.0
分子名称: Fluorescent protein
著者Kikuchi, A, Fukumura, E, Karasawa, S, Mizuno, H, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-04-21
公開日2008-10-21
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Characterization of a Thiazoline-Containing Chromophore in an Orange Fluorescent Protein, Monomeric Kusabira Orange
Biochemistry, 47, 2008
3A0T
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Catalytic domain of histidine kinase ThkA (TM1359) in complex with ADP and Mg ion (trigonal)
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Sensor protein
著者Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
登録日2009-03-24
公開日2009-10-20
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
3A0Z
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Catalytic domain of histidine kinase ThkA (TM1359) (nucleotide free form 4: isopropanol, orthorombic)
分子名称: Sensor protein
著者Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
登録日2009-03-25
公開日2009-10-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
7BYY
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Crystal structure of bacterial toxin
分子名称: Acetyltransferase
著者Zhang, C, Yashiro, Y, Tomita, K.
登録日2020-04-25
公開日2020-06-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.799 Å)
主引用文献Substrate specificities of Escherichia coli ItaT that acetylates aminoacyl-tRNAs.
Nucleic Acids Res., 48, 2020
1PMY
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BU of 1pmy by Molmil
REFINED CRYSTAL STRUCTURE OF PSEUDOAZURIN FROM METHYLOBACTERIUM EXTORQUENS AM1 AT 1.5 ANGSTROMS RESOLUTION
分子名称: COPPER (II) ION, PSEUDOAZURIN
著者Inoue, T, Kai, Y, Harada, S, Kasai, N, Ohshiro, Y, Suzuki, S, Kohzuma, T, Tobari, J.
登録日1994-01-28
公開日1994-07-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Refined crystal structure of pseudoazurin from Methylobacterium extorquens AM1 at 1.5 A resolution.
Acta Crystallogr.,Sect.D, 50, 1994
8XHR
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Crystal structure of Mycobacterium tuberculosis MenT3 bound with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Nucleotidyl transferase AbiEii/AbiGii toxin family protein
著者Liu, J, Yashiro, Y, Tomita, K.
登録日2023-12-18
公開日2024-02-28
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate specificity of Mycobacterium tuberculosis tRNA terminal nucleotidyltransferase toxin MenT3.
Nucleic Acids Res., 52, 2024
8ZYD
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Cryo-EM structure of uropathogenic Escherichia coli CysK:CdiA:tRNA complex B
分子名称: Cysteine synthase A, MAGNESIUM ION, tRNA nuclease CdiA, ...
著者Feng, Z, Yashiro, Y, Tomita, K.
登録日2024-06-17
公開日2024-08-21
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Mechanism of activation of contact-dependent growth inhibition tRNase toxin by the amino acid biogenesis factor CysK in the bacterial competition system.
To Be Published

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