1DLF
| HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 5.25 | 分子名称: | ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S), SULFATE ION | 著者 | Nakasako, M, Takahashi, H, Shimada, I, Arata, Y. | 登録日 | 1998-07-14 | 公開日 | 1999-07-26 | 最終更新日 | 2023-08-09 | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | 主引用文献 | The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody. J.Mol.Biol., 291, 1999
|
|
2RQH
| Structure of GSPT1/ERF3A-PABC | 分子名称: | G1 to S phase transition 1, Polyadenylate-binding protein 1 | 著者 | Osawa, M, Nakanishi, T, Hosoda, N, Uchida, S, Hoshino, T, Katada, I, Shimada, I. | 登録日 | 2009-05-08 | 公開日 | 2010-05-26 | 最終更新日 | 2024-05-01 | 実験手法 | SOLUTION NMR | 主引用文献 | Eukaryotic Translation Termination Factor Gspt/Erf3 Recognizes Pabp with Chemical Exchange Using Two Overlapping Motifs To be Published
|
|
2RQG
| Structure of GSPT1/ERF3A-PABC | 分子名称: | G1 to S phase transition 1, Polyadenylate-binding protein 1 | 著者 | Osawa, M, Nakanishi, T, Hosoda, N, Uchida, S, Hoshino, T, Katada, I, Shimada, I. | 登録日 | 2009-05-08 | 公開日 | 2010-05-26 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Eukaryotic Translation Termination Factor Gspt/Erf3 Recognizes Pabp with Chemical Exchange Using Two Overlapping Motifs To be Published
|
|
1BDD
| STAPHYLOCOCCUS AUREUS PROTEIN A, IMMUNOGLOBULIN-BINDING B DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE | 分子名称: | STAPHYLOCOCCUS AUREUS PROTEIN A | 著者 | Gouda, H, Torigoe, H, Saito, A, Sato, M, Arata, Y, Shimada, I. | 登録日 | 1996-06-28 | 公開日 | 1997-01-11 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures. Biochemistry, 31, 1992
|
|
1BDC
| STAPHYLOCOCCUS AUREUS PROTEIN A, IMMUNOGLOBULIN-BINDING B DOMAIN, NMR, 10 STRUCTURES | 分子名称: | STAPHYLOCOCCUS AUREUS PROTEIN A | 著者 | Gouda, H, Torigoe, H, Saito, A, Sato, M, Arata, Y, Shimada, I. | 登録日 | 1996-06-28 | 公開日 | 1997-01-11 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures. Biochemistry, 31, 1992
|
|
1D1H
| SOLUTION STRUCTURE OF HANATOXIN 1 | 分子名称: | HANATOXIN TYPE 1 | 著者 | Takahashi, H, Kim, J.I, Sato, K, Swartz, K.J, Shimada, I. | 登録日 | 1999-09-16 | 公開日 | 2000-09-20 | 最終更新日 | 2022-02-16 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of hanatoxin1, a gating modifier of voltage-dependent K(+) channels: common surface features of gating modifier toxins. J.Mol.Biol., 297, 2000
|
|
2RSG
| Solution structure of the CERT PH domain | 分子名称: | Collagen type IV alpha-3-binding protein | 著者 | Sugiki, T, Takeuchi, K, Tokunaga, Y, Kumagai, K, Kawano, M, Nishijima, M, Hanada, K, Takahashi, H, Shimada, I. | 登録日 | 2012-02-25 | 公開日 | 2012-08-15 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural basis for the Golgi association by the pleckstrin homology domain of the ceramide trafficking protein (CERT) J.Biol.Chem., 287, 2012
|
|
6AGP
| Structure of Rac1 in the low-affinity state for Mg2+ | 分子名称: | GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ras-related C3 botulinum toxin substrate 1 | 著者 | Toyama, Y, Kontani, K, Katada, T, Shimada, I. | 登録日 | 2018-08-13 | 公開日 | 2019-03-20 | 最終更新日 | 2024-05-01 | 実験手法 | SOLUTION NMR | 主引用文献 | Conformational landscape alternations promote oncogenic activities of Ras-related C3 botulinum toxin substrate 1 as revealed by NMR. Sci Adv, 5, 2019
|
|
2RR8
| |
6KJO
| The microtubule-binding domains of yeast cytoplasmic dynein in the low affinity state | 分子名称: | Dynein heavy chain, cytoplasmic | 著者 | Nishida, N, Komori, Y, Takarada, O, Watanabe, A, Tamura, S, Kubo, S, Shimada, I, Kikkawa, M. | 登録日 | 2019-07-22 | 公開日 | 2020-03-18 | 最終更新日 | 2023-06-14 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural basis for two-way communication between dynein and microtubules. Nat Commun, 11, 2020
|
|
2DLF
| HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 6.75 | 分子名称: | PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S) (HEAVY CHAIN)), PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S)-KAPPA (LIGHT CHAIN)), SULFATE ION | 著者 | Nakasako, M, Takahashi, H, Shimada, I, Arata, Y. | 登録日 | 1998-12-17 | 公開日 | 1999-12-17 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody. J.Mol.Biol., 291, 1999
|
|
8HUJ
| Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A | 分子名称: | Eukaryotic initiation factor 4A-I, Eukaryotic translation initiation factor 4 gamma 1, IRES RNA (J-K-St), ... | 著者 | Suzuki, H, Fujiyoshi, Y, Imai, S, Shimada, I. | 登録日 | 2022-12-24 | 公開日 | 2023-08-02 | 最終更新日 | 2023-09-13 | 実験手法 | ELECTRON MICROSCOPY (3.76 Å) | 主引用文献 | Dynamically regulated two-site interaction of viral RNA to capture host translation initiation factor. Nat Commun, 14, 2023
|
|
8K9L
| Full agonist- and positive allosteric modulator-bound mu-type opioid receptor-G protein complex | 分子名称: | (2~{S})-2-(3-bromanyl-4-methoxy-phenyl)-3-(4-chlorophenyl)sulfonyl-1,3-thiazolidine, DAMGO, G protein subunit alpha i3, ... | 著者 | Hisano, T, Uchikubo-Kamo, T, Shirouzu, M, Imai, S, Kaneko, S, Shimada, I. | 登録日 | 2023-08-01 | 公開日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (3.05 Å) | 主引用文献 | Structural and dynamic insights into the activation of the mu-opioid receptor by an allosteric modulator. Nat Commun, 15, 2024
|
|
8K9K
| Full agonist-bound mu-type opioid receptor-G protein complex | 分子名称: | DAMGO, G protein subunit alpha i3, Guanine nucleotide binding protein, ... | 著者 | Hisano, T, Uchikubo-Kamo, T, Shirouzu, M, Imai, S, Kaneko, S, Shimada, I. | 登録日 | 2023-08-01 | 公開日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (2.98 Å) | 主引用文献 | Structural and dynamic insights into the activation of the mu-opioid receptor by an allosteric modulator. Nat Commun, 15, 2024
|
|
8J7R
| Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A (J-K-St/eIF4G focused) | 分子名称: | Eukaryotic translation initiation factor 4 gamma 1, IRES RNA (J-K-St), MAGNESIUM ION | 著者 | Suzuki, H, Fujiyoshi, Y, Imai, S, Shimada, I. | 登録日 | 2023-04-28 | 公開日 | 2023-08-02 | 最終更新日 | 2023-09-13 | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | 主引用文献 | Dynamically regulated two-site interaction of viral RNA to capture host translation initiation factor. Nat Commun, 14, 2023
|
|
1L4V
| SOLUTION STRUCTURE OF SAPECIN | 分子名称: | Sapecin | 著者 | Hanzawa, H, Iwai, H, Takeuchi, K, Kuzuhara, T, Komano, H, Kohda, D, Inagaki, F, Natori, S, Arata, Y, Shimada, I. | 登録日 | 2002-03-06 | 公開日 | 2002-03-27 | 最終更新日 | 2022-02-23 | 実験手法 | SOLUTION NMR | 主引用文献 | 1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin. FEBS Lett., 269, 1990
|
|
1OAW
| OMEGA-AGATOXIN IVA | 分子名称: | OMEGA-AGATOXIN IVA | 著者 | Kim, J.I, Konishi, S, Iwai, H, Kohno, T, Gouda, H, Shimada, I, Sato, K, Arata, Y. | 登録日 | 1995-06-28 | 公開日 | 1995-10-15 | 最終更新日 | 2024-10-09 | 実験手法 | SOLUTION NMR | 主引用文献 | Three-dimensional solution structure of the calcium channel antagonist omega-agatoxin IVA: consensus molecular folding of calcium channel blockers. J.Mol.Biol., 250, 1995
|
|
1OAV
| OMEGA-AGATOXIN IVA | 分子名称: | OMEGA-AGATOXIN IVA | 著者 | Kim, J.I, Konishi, S, Iwai, H, Kohno, T, Gouda, H, Shimada, I, Sato, K, Arata, Y. | 登録日 | 1995-06-28 | 公開日 | 1995-10-15 | 最終更新日 | 2017-11-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Three-dimensional solution structure of the calcium channel antagonist omega-agatoxin IVA: consensus molecular folding of calcium channel blockers. J.Mol.Biol., 250, 1995
|
|
1KOZ
| SOLUTION STRUCTURE OF OMEGA-GRAMMOTOXIN SIA | 分子名称: | Voltage-dependent Channel Inhibitor | 著者 | Takeuchi, K, Park, E.J, Lee, C.W, Kim, J.I, Takahashi, H, Swartz, K.J, Shimada, I. | 登録日 | 2001-12-25 | 公開日 | 2002-08-28 | 最終更新日 | 2024-10-16 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of omega-grammotoxin SIA, a gating modifier of P/Q and N-type Ca(2+) channel. J.Mol.Biol., 321, 2002
|
|
7EN4
| Multi-state structure determination and dynamics analysis elucidate a new ubiquitin-recognition mechanism of yeast ubiquitin C-terminal hydrolase. | 分子名称: | Ubiquitin carboxyl-terminal hydrolase YUH1 | 著者 | Okada, M, Tateishi, Y, Nojiri, E, Mikawa, T, Rajesh, S, Ogasawa, H, Ueda, T, Yagi, H, Kohno, T, Kigawa, T, Shimada, I, Guentert, P, Yutaka, I, Ikeya, T. | 登録日 | 2021-04-15 | 公開日 | 2022-04-20 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Multi-state structure determination and dynamics analysis elucidate a new ubiquitin-recognition mechanism of yeast ubiquitin C-terminal hydrolase. To Be Published
|
|
2I83
| hyaluronan-binding domain of CD44 in its ligand-bound form | 分子名称: | CD44 antigen | 著者 | Takeda, M, Ogino, S, Umemoto, R, Sakakura, M, Kajiwara, M, Sugahara, K.N, Hayasaka, H, Miyasaka, M, Terasawa, H, Shimada, I. | 登録日 | 2006-09-01 | 公開日 | 2006-11-21 | 最終更新日 | 2022-03-09 | 実験手法 | SOLUTION NMR | 主引用文献 | Ligand-induced Structural Changes of the CD44 Hyaluronan-binding Domain Revealed by NMR J.Biol.Chem., 281, 2006
|
|
2LMK
| Solution Structure of Mouse Pheromone ESP1 | 分子名称: | Exocrine gland-secreting peptide 1 | 著者 | Yoshinaga, S, Sato, T, Hirakane, M, Esaki, K, Hamaguchi, T, Haga-Yamanaka, S, Tsunoda, M, Kimoto, H, Shimada, I, Touhara, K, Terasawa, H. | 登録日 | 2011-12-06 | 公開日 | 2013-04-17 | 最終更新日 | 2023-06-14 | 実験手法 | SOLUTION NMR | 主引用文献 | Structure of the Mouse Sex Peptide Pheromone ESP1 Reveals a Molecular Basis for Specific Binding to the Class-C G-Protein-Coupled Vomeronasal Receptor J.Biol.Chem., 2013
|
|
2MLQ
| Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a frount bound form | 分子名称: | MCP-1 receptor | 著者 | Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H. | 登録日 | 2014-03-04 | 公開日 | 2014-10-08 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT. Febs J., 281, 2014
|
|
2MLO
| Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a Membrane bound form | 分子名称: | MCP-1 receptor | 著者 | Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H. | 登録日 | 2014-03-04 | 公開日 | 2014-10-08 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT. Febs J., 281, 2014
|
|
6KIQ
| Complex of yeast cytoplasmic dynein MTBD-High and MT with DTT | 分子名称: | Alpha tubulin, Dynein heavy chain, cytoplasmic, ... | 著者 | Komori, Y, Nishida, N, Shimada, I, Kikkawa, M. | 登録日 | 2019-07-19 | 公開日 | 2020-03-04 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (3.62 Å) | 主引用文献 | Structural basis for two-way communication between dynein and microtubules. Nat Commun, 11, 2020
|
|