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PDB: 1957 results

5ZM2
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Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AndA
Descriptor: Dioxygenase andA
Authors:Nakashima, Y, Senda, T.
Deposit date:2018-04-01
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and Computational Bases for Dramatic Skeletal Rearrangement in Anditomin Biosynthesis.
J. Am. Chem. Soc., 140, 2018
3VLW
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Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with mannuronate-guluronate disaccharide
Descriptor: AlgQ1, CALCIUM ION, GLYCEROL, ...
Authors:Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2011-12-05
Release date:2012-01-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
3VLU
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Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with saturated trimannuronate
Descriptor: AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2011-12-05
Release date:2012-01-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
3VLV
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Crystal structure of Sphingomonas sp. A1 alginate-binding ptotein AlgQ1 in complex with unsaturated triguluronate
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, AlgQ1, CALCIUM ION
Authors:Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2011-12-05
Release date:2012-01-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
5XSW
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BU of 5xsw by Molmil
Crystal structure of an archaeal chitinase in the substrate-complex form (P63)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Chitinase, GLYCEROL, ...
Authors:Nishitani, Y, Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
5YBQ
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Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA-V150L/A232S in complex with preaustinoid A2
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
Authors:Nakashima, Y, Senda, M.
Deposit date:2017-09-05
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBM
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Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA
Descriptor: PrhA
Authors:Nakashima, Y, Senda, M.
Deposit date:2017-09-05
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.115 Å)
Cite:Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBR
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BU of 5ybr by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA-V150L/A232S in complex with preaustinoid A3
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
Authors:Nakashima, Y, Senda, M.
Deposit date:2017-09-05
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.261 Å)
Cite:Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBO
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BU of 5ybo by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA in complex with preaustinoid A1
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
Authors:Nakashima, Y, Senda, M.
Deposit date:2017-09-05
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBL
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BU of 5ybl by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AusE
Descriptor: 2-OXOGLUTARIC ACID, MANGANESE (II) ION, Multifunctional dioxygenase ausE
Authors:Nakashima, Y, Senda, M.
Deposit date:2017-09-05
Release date:2018-01-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.108 Å)
Cite:Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5XSV
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BU of 5xsv by Molmil
Crystal structure of an archaeal chitinase in the ligand-free form
Descriptor: COBALT (II) ION, Chitinase, SULFATE ION
Authors:Nishitani, Y, Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.723 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
5XSX
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Crystal structure of an archaeal chitinase in the substrate-complex form (P212121)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase, GLYCEROL, ...
Authors:Nishitani, Y, Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.642 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
5YBT
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BU of 5ybt by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA-V150L/A232S/M241V in complex with berkeleyone A
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
Authors:Nakashima, Y, Senda, M.
Deposit date:2017-09-05
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBS
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BU of 5ybs by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA-V150L/A232S in complex with berkeleyone A
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
Authors:Nakashima, Y, Senda, M.
Deposit date:2017-09-05
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBN
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BU of 5ybn by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA in complex with (alpha)ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA
Authors:Nakashima, Y, Senda, M.
Deposit date:2017-09-05
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.104 Å)
Cite:Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBP
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BU of 5ybp by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA-V150L/A232S in complex with preaustinoid A1
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
Authors:Nakashima, Y, Senda, M.
Deposit date:2017-09-05
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.312 Å)
Cite:Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
7W6F
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BU of 7w6f by Molmil
Polyketide cyclase OAC-F24I mutant from Cannabis sativa in complex with 6-nonylresorcylic acid
Descriptor: 2-nonyl-4,6-bis(oxidanyl)benzoic acid, GLYCEROL, Olivetolic acid cyclase
Authors:Nakashima, Y, Lee, Y.E, Morita, H.
Deposit date:2021-12-01
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Dual Engineering of Olivetolic Acid Cyclase and Tetraketide Synthase to Generate Longer Alkyl-Chain Olivetolic Acid Analogs.
Org.Lett., 24, 2022
7W6G
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BU of 7w6g by Molmil
TKS-L190G mutant from Cannabis sativa in complex with lauroyl-CoA
Descriptor: 3,5,7-trioxododecanoyl-CoA synthase, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Nakashima, Y, Lee, Y.E, Morita, H.
Deposit date:2021-12-01
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Dual Engineering of Olivetolic Acid Cyclase and Tetraketide Synthase to Generate Longer Alkyl-Chain Olivetolic Acid Analogs.
Org.Lett., 24, 2022
7W6E
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BU of 7w6e by Molmil
Polyketide cyclase OAC-F24I mutant from Cannabis sativa in complex with 6-heptylresorcylic acid
Descriptor: 2-heptyl-4,6-bis(oxidanyl)benzoic acid, Olivetolic acid cyclase
Authors:Nakashima, Y, Lee, Y.E, Morita, H.
Deposit date:2021-12-01
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Dual Engineering of Olivetolic Acid Cyclase and Tetraketide Synthase to Generate Longer Alkyl-Chain Olivetolic Acid Analogs.
Org.Lett., 24, 2022
7W6D
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BU of 7w6d by Molmil
Polyketide cyclase OAC-F24I mutant from Cannabis sativa in complex with olivetolic acid
Descriptor: 2,4-bis(oxidanyl)-6-pentyl-benzoic acid, Olivetolic acid cyclase
Authors:Nakashima, Y, Lee, Y.E, Morita, H.
Deposit date:2021-12-01
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Dual Engineering of Olivetolic Acid Cyclase and Tetraketide Synthase to Generate Longer Alkyl-Chain Olivetolic Acid Analogs.
Org.Lett., 24, 2022
7Y3V
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BU of 7y3v by Molmil
Crystal structure of CdpNPT in complex with harmane
Descriptor: 1-methyl-9H-pyrido[3,4-b]indole, Cyclic dipeptide N-prenyltransferase, PHOSPHATE ION
Authors:Nakashima, Y, Morita, H.
Deposit date:2022-06-13
Release date:2023-04-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Catalytic potential of a fungal indole prenyltransferase toward beta-carbolines, harmine and harman, and their prenylation effects on antibacterial activity.
J.Biosci.Bioeng., 134, 2022
7XVJ
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BU of 7xvj by Molmil
Crystal structure of CdpNPT in complex with harmol
Descriptor: 1-methyl-9~{H}-pyrido[3,4-b]indol-7-ol, Cyclic dipeptide N-prenyltransferase, PHOSPHATE ION
Authors:Nakashima, Y, Morita, H.
Deposit date:2022-05-24
Release date:2023-04-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Enzymatic formation of a prenyl beta-carboline by a fungal indole prenyltransferase.
J Nat Med, 76, 2022
7VM1
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BU of 7vm1 by Molmil
Crystal Structure of HasAp Capturing Iron Tetra(4-pyridyl)porphyrin
Descriptor: Fe-Tetra(4-pyridyl)porphyrin, GLYCEROL, Heme acquisition protein HasAp
Authors:Shisaka, Y, Ueda, G, Sakakibara, E, Sugimoto, H, Shoji, O.
Deposit date:2021-10-06
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein.
Chembiochem, 23, 2022
7YBC
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BU of 7ybc by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with (S)-4-hydroxy-4-methyl-2-oxoglutarate and factor X-derived peptide (39mer-4Ser)
Descriptor: (2~{S})-2-methyl-2-oxidanyl-4-oxidanylidene-pentanedioic acid, Aspartyl/asparaginyl beta-hydroxylase, Coagulation factor X, ...
Authors:Nakashima, Y, Brewitz, L, Schofield, C.J.
Deposit date:2022-06-29
Release date:2023-07-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with (S)-4-hydroxy-4-methyl-2-oxoglutarate and factor X-derived peptide (39mer-4Ser)
To Be Published
7YB8
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BU of 7yb8 by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with D-2-hydroxyglutarate and factor X-derived peptide (39mer-4Ser)
Descriptor: (2R)-2-hydroxypentanedioic acid, Aspartyl/asparaginyl beta-hydroxylase, Coagulation factor X, ...
Authors:Nakashima, Y, Brewitz, L, Schofield, C.J.
Deposit date:2022-06-29
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with D-2-hydroxyglutarate and factor X-derived peptide (39mer-4Ser)
To Be Published

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PDB entries from 2024-10-16

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