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PDB: 2008 件

2ZA8
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recombinant horse L-chain apoferritin N-terminal deletion mutant (residues 1-8)
分子名称: CADMIUM ION, Ferritin light chain
著者Yamashita, I, Mishima, Y, Park, S.-Y, Heddle, J.G, Tame, J.R.H.
登録日2007-10-02
公開日2008-01-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Effect of N-terminal Residues on the Structural Stability of Recombinant Horse L-chain Apoferritin in an Acidic Environment
J.BIOCHEM.(TOKYO), 142, 2007
1MJU
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1.22 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF ESTEROLYTIC ANTIBODY MS6-12
分子名称: GLYCEROL, IMMUNOGLOBULIN MS6-12
著者Ruzheinikov, S.N, Muranova, T.A, Sedelnikova, S.E, Partridge, L.J, Blackburn, G.M, Murray, I.A, Kakinuma, H, Takashi, N, Shimazaki, K, Sun, J, Nishi, Y, Rice, D.W.
登録日2002-08-28
公開日2003-09-23
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity
J.Mol.Biol., 332, 2003
1MJ7
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Crystal Structure Of The Complex Of The Fab fragment of Esterolytic Antibody MS5-393 and A Transition-State Analog
分子名称: IMMUNOGLOBULIN MS5-393, N-{[2-({[1-(4-CARBOXYBUTANOYL)AMINO]-2-PHENYLETHYL}-HYDROXYPHOSPHINYL)OXY]ACETYL}-2-PHENYLETHYLAMINE
著者Ruzheinikov, S.N, Muranova, T.A, Sedelnikova, S.E, Partridge, L.J, Blackburn, G.M, Murray, I.A, Kakinuma, H, Takashi, N, Shimazaki, K, Sun, J, Nishi, Y, Rice, D.W.
登録日2002-08-27
公開日2003-09-23
最終更新日2011-11-16
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity
J.Mol.Biol., 332, 2003
6IOP
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The ligand binding domain of Mlp24
分子名称: ACETATE ION, ALANINE, CALCIUM ION, ...
著者Sumita, K, Takahashi, Y, Nishiyama, S, Kawagishi, I, Imada, K.
登録日2018-10-31
公開日2019-03-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6KNC
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PolD-PCNA-DNA (form B)
分子名称: DNA polymerase D DP2 (DNA polymerase II large) subunit, DNA polymerase II small subunit, DNA polymerase sliding clamp 1, ...
著者Mayanagi, K, Oki, K, Miyazaki, N, Ishino, S, Yamagami, T, Iwasaki, K, Kohda, D, Morikawa, K, Shirai, T, Ishino, Y.
登録日2019-08-05
公開日2020-08-05
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (9.3 Å)
主引用文献Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy.
Bmc Biol., 18, 2020
4CDO
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BU of 4cdo by Molmil
Crystal structure of PQBP1 bound to spliceosomal U5-15kD
分子名称: THIOREDOXIN-LIKE PROTEIN 4A, POLYGLUTAMINE-BINDING PROTEIN
著者Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Nabeshima, Y, Okazawa, H.
登録日2013-11-05
公開日2014-04-30
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
1DVV
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BU of 1dvv by Molmil
SOLUTION STRUCTURE OF THE QUINTUPLE MUTANT OF CYTOCHROME C-551 FROM PSEUDOMONAS AERUGINOSA
分子名称: CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
著者Hasegawa, J, Uchiyama, S, Tanimoto, Y, Mizutani, M, Kobayashi, Y, Sambongi, Y, Igarashi, Y.
登録日2000-01-22
公開日2000-11-29
最終更新日2024-04-10
実験手法SOLUTION NMR
主引用文献Selected mutations in a mesophilic cytochrome c confer the stability of a thermophilic counterpart.
J.Biol.Chem., 275, 2000
2PBP
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Crystal structure of ENOYL-CoA hydrates subunit I (gk_2039) from geobacillus kaustophilus HTA426
分子名称: Enoyl-CoA hydratase subunit I
著者Jeyakanthan, J, Kanaujia, S.P, Vasuki, R.C, Sekar, K, Agari, Y, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-29
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of ENOYL-CoA hydrates subunit I (gk_2039) from geobacillus kaustophilus HTA426
To be Published
1MBF
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MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
5ZSR
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NifS from Hydrogenimonas thermophila, soaked with L-cysteine for 8 min
分子名称: Cysteine desulfurase
著者Nakamura, R, Fujishiro, T, Takahashi, Y.
登録日2018-04-29
公開日2019-05-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
3IHA
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BU of 3iha by Molmil
Crystal Structure Analysis of Mglu in its glutamate form
分子名称: GLUTAMIC ACID, Salt-tolerant glutaminase
著者Yoshimune, K, Shirakihara, Y.
登録日2009-07-29
公開日2010-01-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of salt-tolerant glutaminase from Micrococcus luteus K-3 in the presence and absence of its product l-glutamate and its activator Tris
Febs J., 277, 2010
5ZST
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NifS from Hydrogenimonas thermopile in a persulfurated form
分子名称: Cysteine desulfurase
著者Nakamura, R, Fujishiro, T, Takahashi, Y.
登録日2018-04-29
公開日2019-05-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
3IH8
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Crystal Structure Analysis of Mglu in its native form
分子名称: Salt-tolerant glutaminase
著者Yoshimune, K, Shirakihara, Y.
登録日2009-07-29
公開日2010-01-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of salt-tolerant glutaminase from Micrococcus luteus K-3 in the presence and absence of its product l-glutamate and its activator Tris
Febs J., 277, 2010
6KFH
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BU of 6kfh by Molmil
Undocked hemichannel of an N-terminal deletion mutant of INX-6 in a nanodisc
分子名称: Innexin-6
著者Burendei, B, Shinozaki, R, Watanabe, M, Terada, T, Tani, K, Fujiyoshi, Y, Oshima, A.
登録日2019-07-07
公開日2020-02-12
最終更新日2020-03-11
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Cryo-EM structures of undocked innexin-6 hemichannels in phospholipids.
Sci Adv, 6, 2020
3IH9
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Crystal Structure Analysis of Mglu in its tris form
分子名称: Salt-tolerant glutaminase
著者Yoshimune, K, Shirakihara, Y.
登録日2009-07-29
公開日2010-01-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of salt-tolerant glutaminase from Micrococcus luteus K-3 in the presence and absence of its product l-glutamate and its activator Tris
Febs J., 277, 2010
5ZSQ
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BU of 5zsq by Molmil
NifS from Hydrogenimonas thermophila, soaked with L-cysteine for 4 min
分子名称: Cysteine desulfurase
著者Nakamura, R, Fujishiro, T, Takahashi, Y.
登録日2018-04-29
公開日2019-05-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.211 Å)
主引用文献X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
1ISE
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BU of 1ise by Molmil
Crystal structure of a mutant of ribosome recycling factor from Escherichia coli, Arg132Gly
分子名称: Ribosome Recycling Factor
著者Nakano, H, Yoshida, T, Oka, S, Uchiyama, S, Nishina, K, Ohkubo, T, Kato, H, Yamagata, Y, Kobayashi, Y.
登録日2001-11-30
公開日2003-10-07
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of a mutant of ribosome recycling factor from Escherichia coli, Arg132Gly
To be Published
2ZCZ
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BU of 2zcz by Molmil
Crystal structures and thermostability of mutant TRAP3 A7 (ENGINEERED TRAP)
分子名称: TRYPTOPHAN, Transcription attenuation protein mtrB
著者Watanabe, M, Mishima, Y, Yamashita, I, Park, S.Y, Tame, J.R.H, Heddle, J.G.
登録日2007-11-15
公開日2008-04-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Intersubunit linker length as a modifier of protein stability: crystal structures and thermostability of mutant TRAP.
Protein Sci., 17, 2008
5ZSP
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NifS from Hydrogenimonas thermophila
分子名称: Cysteine desulfurase
著者Nakamura, R, Fujishiro, T, Takahashi, Y.
登録日2018-04-29
公開日2019-05-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
2RSO
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BU of 2rso by Molmil
Solution structure of the chromodomain of Swi6
分子名称: Chromatin-associated protein swi6
著者Shimojo, H, Nishimura, Y.
登録日2012-04-18
公開日2012-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
2RJ2
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Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
分子名称: CHLORIDE ION, F-box only protein 2, NICKEL (II) ION
著者Vaijayanthimala, S, Velmurugan, D, Mizushima, T, Yamane, T, Yoshida, Y, Tanaka, K.
登録日2007-10-14
公開日2008-10-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
To be Published
2RSN
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Solution structure of the chromodomain of Chp1 in complex with H3K9me3 peptide
分子名称: Chromo domain-containing protein 1, peptide from Histone H3
著者Shimojo, H, Nishimura, Y.
登録日2012-04-18
公開日2012-08-29
実験手法SOLUTION NMR
主引用文献Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
1IW4
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BU of 1iw4 by Molmil
Solution structure of ascidian trypsin inhibitor
分子名称: trypsin inhibitor
著者Hemmi, H, Yoshida, T, Kumazaki, T, Nemoto, N, Hasegawa, J, Nishioka, F, Kyogoku, Y, Yokosawa, H, Kobayashi, Y.
登録日2002-04-19
公開日2002-08-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution structure of ascidian trypsin inhibitor determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 41, 2002
8J4C
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YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera), ...
著者Ikei, M, Miyazaki, R, Monden, K, Naito, Y, Takeuchi, A, Takahashi, Y.S, Tanaka, Y, Ichikawa, M, Tsukazaki, T.
登録日2023-04-19
公開日2024-03-27
実験手法X-RAY DIFFRACTION (3.34 Å)
主引用文献Structure and function of YeeE-YeeD complex for sophisticated thiosulfate uptake
To Be Published
1KW6
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Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 1.45 A resolution
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2,3-Dihydroxybiphenyl dioxygenase, BIPHENYL-2,3-DIOL, ...
著者Sato, N, Uragami, Y, Nishizaki, T, Takahashi, Y, Sazaki, G, Sugimoto, K, Nonaka, T, Masai, E, Fukuda, M, Senda, T.
登録日2002-01-28
公開日2003-01-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002

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