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PDB: 2087 件

3WB2
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HcgB from Methanocaldococcus jannaschii in complex with the guanylyl-pyridinol product in a model reaction of [Fe]-hydrogenase cofactor biosynthesis
分子名称: 5'-O-[(R)-[(3,6-dimethyl-2-oxo-1,2-dihydropyridin-4-yl)oxy](hydroxy)phosphoryl]guanosine, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2013-05-11
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献Identification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis.
Angew.Chem.Int.Ed.Engl., 52, 2013
3WSF
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BU of 3wsf by Molmil
Oxidized HcgD from Methanocaldococcus jannaschii with citrate
分子名称: CITRIC ACID, FE (III) ION, Putative GTP cyclohydrolase 1 type 2
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-03-13
公開日2014-08-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett., 588, 2014
2EME
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BU of 2eme by Molmil
Solution structure of the C2H2 type zinc finger (region 725-757) of human Zinc finger protein 473
分子名称: ZINC ION, Zinc finger protein 473
著者Tomizawa, T, Tochio, N, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 725-757) of human Zinc finger protein 473
To be Published
2EMY
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BU of 2emy by Molmil
Solution structure of the C2H2 type zinc finger (region 551-583) of human Zinc finger protein 268
分子名称: ZINC ION, Zinc finger protein 268
著者Tochio, N, Tomizawa, T, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 551-583) of human Zinc finger protein 268
To be Published
2EM9
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BU of 2em9 by Molmil
Solution structure of the C2H2 type zinc finger (region 367-399) of human Zinc finger protein 224
分子名称: ZINC ION, Zinc finger protein 224
著者Tomizawa, T, Tochio, N, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 367-399) of human Zinc finger protein 224
To be Published
2EMZ
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BU of 2emz by Molmil
Solution structure of the C2H2 type zinc finger (region 628-660) of human Zinc finger protein 95 homolog
分子名称: ZINC ION, Zinc finger protein 95 homolog
著者Tochio, N, Tomizawa, T, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 628-660) of human Zinc finger protein 95 homolog
To be Published
2EOI
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BU of 2eoi by Molmil
Solution structure of the C2H2 type zinc finger (region 329-359) of human Zinc finger protein 268
分子名称: ZINC ION, Zinc finger protein 268
著者Tochio, N, Tomizawa, T, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-29
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 329-359) of human Zinc finger protein 268
To be Published
2EMF
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BU of 2emf by Molmil
Solution structure of the C2H2 type zinc finger (region 379-411) of human Zinc finger protein 484
分子名称: ZINC ION, Zinc finger protein 484
著者Tomizawa, T, Tochio, N, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 379-411) of human Zinc finger protein 484
To be Published
2EMW
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BU of 2emw by Molmil
Solution structure of the C2H2 type zinc finger (region 301-331) of human Zinc finger protein 268
分子名称: ZINC ION, Zinc finger protein 268
著者Tochio, N, Tomizawa, T, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 301-331) of human Zinc finger protein 268
To be Published
2ENC
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BU of 2enc by Molmil
Solution structure of the C2H2 type zinc finger (region 395-427) of human Zinc finger protein 224
分子名称: ZINC ION, Zinc finger protein 224
著者Tochio, N, Tomizawa, T, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 395-427) of human Zinc finger protein 224
To be Published
3X3Z
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BU of 3x3z by Molmil
Copper amine oxidase from Arthrobacter globiformis: Aminoresorcinol form produced by anaerobic reduction with ethylamine hydrochloride
分子名称: CHLORIDE ION, COPPER (II) ION, GLYCEROL, ...
著者Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K.
登録日2015-03-10
公開日2015-08-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.
J.Biol.Chem., 290, 2015
5Z76
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BU of 5z76 by Molmil
Artificial L-threonine 3-dehydrogenase designed by full consensus design
分子名称: Artificial L-threonine 3-dehydrogenase
著者Nakano, S, Motoyama, T, Miyashita, Y, Ishizuka, Y, Matsuo, N, Tokiwa, H, Shinoda, S, Asano, Y, Ito, S.
登録日2018-01-27
公開日2018-08-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Benchmark Analysis of Native and Artificial NAD+-Dependent Enzymes Generated by a Sequence-Based Design Method with or without Phylogenetic Data.
Biochemistry, 57, 2018
7WG0
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BU of 7wg0 by Molmil
Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-palmitoyl-L-phenylalanine
分子名称: (2~{S})-2-(hexadecanoylamino)-3-phenyl-propanoic acid, Bifunctional cytochrome P450/NADPH--P450 reductase, MANGANESE PROTOPORPHYRIN IX
著者Keita, O, Osami, S, Yuichiro, A, Hiroshi, S.
登録日2021-12-27
公開日2023-01-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Heme Domain with N-palmitoyl-L-phenylalanine
To Be Published
2EM7
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BU of 2em7 by Molmil
Solution structure of the C2H2 type zinc finger (region 339-371) of human Zinc finger protein 224
分子名称: ZINC ION, Zinc finger protein 224
著者Tomizawa, T, Tochio, N, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 339-371) of human Zinc finger protein 224
To be Published
2EMC
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BU of 2emc by Molmil
Solution structure of the C2H2 type zinc finger (region 641-673) of human Zinc finger protein 473
分子名称: ZINC ION, Zinc finger protein 473
著者Tomizawa, T, Tochio, N, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 641-673) of human Zinc finger protein 473
To be Published
2EN6
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BU of 2en6 by Molmil
Solution structure of the C2H2 type zinc finger (region 887-919) of human Zinc finger protein 268
分子名称: ZINC ION, Zinc finger protein 268
著者Tochio, N, Tomizawa, T, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 887-919) of human Zinc finger protein 268
To be Published
2EMP
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BU of 2emp by Molmil
Solution structure of the C2H2 type zinc finger (region 536-568) of human Zinc finger protein 347
分子名称: ZINC ION, Zinc finger protein 347
著者Tomizawa, T, Tochio, N, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 536-568) of human Zinc finger protein 347
To be Published
2EN9
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BU of 2en9 by Molmil
Solution structure of the C2H2 type zinc finger (region 415-447) of human Zinc finger protein 28 homolog
分子名称: ZINC ION, Zinc finger protein 28 homolog
著者Tochio, N, Tomizawa, T, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 415-447) of human Zinc finger protein 28 homolog
To be Published
2EOW
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BU of 2eow by Molmil
Solution structure of the C2H2 type zinc finger (region 368-400) of human Zinc finger protein 347
分子名称: ZINC ION, Zinc finger protein 347
著者Tochio, N, Tomizawa, T, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-29
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 368-400) of human Zinc finger protein 347
To be Published
3WB0
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BU of 3wb0 by Molmil
HcgB from Methanocaldococcus jannaschii in complex with light-decomposed FeGP cofactor of [Fe]-hydrogenase
分子名称: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine, Uncharacterized protein MJ0488
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2013-05-10
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Identification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis.
Angew.Chem.Int.Ed.Engl., 52, 2013
2EM2
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BU of 2em2 by Molmil
Solution structure of the C2H2 type zinc finger (region 584-616) of human Zinc finger protein 28 homolog
分子名称: ZINC ION, Zinc finger protein 28 homolog
著者Tomizawa, T, Tochio, N, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 584-616) of human Zinc finger protein 28 homolog
To be Published
2EMH
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BU of 2emh by Molmil
Solution structure of the C2H2 type zinc finger (region 491-523) of human Zinc finger protein 484
分子名称: ZINC ION, Zinc finger protein 484
著者Tomizawa, T, Tochio, N, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 491-523) of human Zinc finger protein 484
To be Published
5Z75
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BU of 5z75 by Molmil
Artificial L-threonine 3-dehydrogenase designed by ancestral sequence reconstruction.
分子名称: Artificial L-threonine 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, NONAETHYLENE GLYCOL, ...
著者Nakano, S, Motoyama, T, Miyashita, Y, Ishizuka, Y, Matsuo, N, Tokiwa, H, Shinoda, S, Asano, Y, Ito, S.
登録日2018-01-27
公開日2018-08-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Benchmark Analysis of Native and Artificial NAD+-Dependent Enzymes Generated by a Sequence-Based Design Method with or without Phylogenetic Data.
Biochemistry, 57, 2018
2EN1
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BU of 2en1 by Molmil
Solution structure of the C2H2 type zinc finger (region 563-595) of human Zinc finger protein 224
分子名称: ZINC ION, Zinc finger protein 224
著者Tochio, N, Tomizawa, T, Abe, H, Saito, K, Li, H, Sato, M, Koshiba, S, Kobayashi, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-28
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the C2H2 type zinc finger (region 563-595) of human Zinc finger protein 224
To be Published
3X40
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BU of 3x40 by Molmil
Copper amine oxidase from Arthrobacter globiformis: Product Schiff-base form produced by anaerobic reduction in the presence of sodium chloride
分子名称: CHLORIDE ION, COPPER (II) ION, GLYCEROL, ...
著者Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K.
登録日2015-03-10
公開日2015-08-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.
J.Biol.Chem., 290, 2015

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件を2024-09-04に公開中

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