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PDB: 605 results

2E5D
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Crystal structure of Human NMPRTase complexed with nicotinamide
Descriptor: NICOTINAMIDE, Nicotinamide phosphoribosyltransferase
Authors:Takahashi, R, Nakamura, S, Kobayashi, Y, Ohkubo, T.
Deposit date:2006-12-20
Release date:2007-12-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase
J.Biochem., 147, 2010
2E5C
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Crystal structure of Human NMPRTase complexed with 5'-phosphoribosyl-1'-pyrophosphate
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, Nicotinamide phosphoribosyltransferase
Authors:Takahashi, R, Nakamura, S, Kobayashi, Y, Ohkubo, T.
Deposit date:2006-12-20
Release date:2007-12-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase
J.Biochem., 147, 2010
2E5B
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BU of 2e5b by Molmil
Crystal structure of Human NMPRTase as free-form
Descriptor: Nicotinamide phosphoribosyltransferase
Authors:Takahashi, R, Nakamura, S, Kobayashi, Y, Ohkubo, T.
Deposit date:2006-12-20
Release date:2007-12-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase
J.Biochem., 147, 2010
1WW1
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BU of 1ww1 by Molmil
Crystal structure of tRNase Z from Thermotoga maritima
Descriptor: ZINC ION, tRNase Z
Authors:Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-30
Release date:2005-02-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the tRNA 3' Processing Endoribonuclease tRNase Z from Thermotoga maritima
J.Biol.Chem., 280, 2005
2E7Y
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High resolution structure of T. maritima tRNase Z
Descriptor: S-1,2-PROPANEDIOL, SULFATE ION, ZINC ION, ...
Authors:Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-15
Release date:2007-09-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:The structure of the flexible arm of Thermotoga maritima tRNase Z differs from those of homologous enzymes
Acta Crystallogr.,Sect.F, 63, 2007
2EY4
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BU of 2ey4 by Molmil
Crystal Structure of a Cbf5-Nop10-Gar1 Complex
Descriptor: Probable tRNA pseudouridine synthase B, Ribosome biogenesis protein Nop10, ZINC ION, ...
Authors:Rashid, R, Liang, B, Li, H, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2005-11-09
Release date:2006-01-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita.
Mol.Cell, 21, 2006
2YVT
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BU of 2yvt by Molmil
Crystal structure of aq_1956
Descriptor: Hypothetical protein aq_1956
Authors:Ishii, R, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-15
Release date:2007-10-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of aq_1956
To be Published
2ZK9
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BU of 2zk9 by Molmil
Crystal Structure of Protein-glutaminase
Descriptor: GLYCEROL, Protein-glutaminase, SODIUM ION
Authors:Hashizume, R.
Deposit date:2008-03-13
Release date:2009-03-17
Last modified:2012-08-29
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex
J.Biol.Chem., 286, 2011
3A56
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Crystal structure of pro- protein-glutaminase
Descriptor: CITRIC ACID, Protein-glutaminase
Authors:Hashizume, R, Yamaguchi, S, Mikami, B.
Deposit date:2009-07-31
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.728 Å)
Cite:Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex
J.Biol.Chem., 286, 2011
3AOC
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Structures of the multidrug exporter AcrB reveal a proximal multisite drug-binding pocket
Descriptor: Acriflavine resistance protein B, ERYTHROMYCIN A
Authors:Nakashima, R, Sakurai, K, Yamaguchi, A.
Deposit date:2010-09-23
Release date:2011-11-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.34 Å)
Cite:Structures of the multidrug exporter AcrB reveal a proximal multisite drug-binding pocket
Nature, 480, 2011
3AOD
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Structures of the multidrug exporter AcrB reveal a proximal multisite drug-binding pocket
Descriptor: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE, Acriflavine resistance protein B, RIFAMPICIN
Authors:Nakashima, R, Sakurai, K, Yamaguchi, A.
Deposit date:2010-09-23
Release date:2011-11-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structures of the multidrug exporter AcrB reveal a proximal multisite drug-binding pocket
Nature, 480, 2011
2YVU
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Crystal structure of APE1195
Descriptor: Probable adenylyl-sulfate kinase
Authors:Ishii, R, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-15
Release date:2007-10-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of APE1195
To be published
3AOA
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BU of 3aoa by Molmil
Structures of the multidrug exporter AcrB reveal a proximal multisite drug-binding pocket
Descriptor: Acriflavine resistance protein B
Authors:Nakashima, R, Sakurai, K, Yamaguchi, A.
Deposit date:2010-09-23
Release date:2011-11-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Structures of the multidrug exporter AcrB reveal a proximal multisite drug-binding pocket
Nature, 480, 2011
3AOB
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Structures of the multidrug exporter AcrB reveal a proximal multisite drug-binding pocket
Descriptor: Acriflavine resistance protein B, RIFAMPICIN
Authors:Nakashima, R, Sakurai, K, Yamaguchi, A.
Deposit date:2010-09-23
Release date:2011-11-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Structures of the multidrug exporter AcrB reveal a proximal multisite drug-binding pocket
Nature, 480, 2011
3A55
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Crystal structure of the A47Q2 mutant of pro- protein-glutaminase
Descriptor: Protein-glutaminase
Authors:Hashizume, R, Yamaguchi, S, Mikami, B.
Deposit date:2009-07-30
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex
J.Biol.Chem., 286, 2011
3A54
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BU of 3a54 by Molmil
Crystal structure of the A47Q1 mutant of pro-protein-glutaminase
Descriptor: Protein-glutaminase
Authors:Hashizume, R, Yamaguchi, S, Mikami, B.
Deposit date:2009-07-30
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex
J.Biol.Chem., 286, 2011
8D91
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BU of 8d91 by Molmil
Crystal structure of ChoE in complex with acetate and tetraethylammonium (TEA)
Descriptor: ACETATE ION, ChoE, TETRAETHYLAMMONIUM ION
Authors:Pham, V.D, Shi, R.
Deposit date:2022-06-09
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal structures of bacterial acetylcholinesterase ChoE provide insights into the plasticity of catalytic Ser in regulating the active site geometry and the functional state of the SGNH hydrolases
To be published
8D8Z
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BU of 8d8z by Molmil
Crystal structure of ChoE N147A mutant in complex with thiocholine and chloride
Descriptor: 2-(TRIMETHYLAMMONIUM)ETHYL THIOL, CHLORIDE ION, ChoE, ...
Authors:Pham, V.D, Shi, R.
Deposit date:2022-06-09
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Crystal structures of bacterial acetylcholinesterase ChoE provide insights into the plasticity of catalytic Ser in regulating the active site geometry and the functional state of the SGNH hydrolases
To be published
8D8W
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BU of 8d8w by Molmil
Crystal structure of ChoE with Ser38 adopting alternative conformations
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ChoE, IODIDE ION
Authors:Pham, V.D, Shi, R.
Deposit date:2022-06-09
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structures of bacterial acetylcholinesterase ChoE provide insights into the plasticity of catalytic Ser in regulating the active site geometry and the functional state of the SGNH hydrolases
To be published
8D8Y
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BU of 8d8y by Molmil
Crystal structure of ChoE N147A mutant in complex with acetylthiocholine
Descriptor: 2-(TRIMETHYLAMMONIUM)ETHYL THIOL, ACETYLTHIOCHOLINE, CHLORIDE ION, ...
Authors:Pham, V.D, Shi, R.
Deposit date:2022-06-09
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystal structures of bacterial acetylcholinesterase ChoE provide insights into the plasticity of catalytic Ser in regulating the active site geometry and the functional state of the SGNH hydrolases
To be published
8D90
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BU of 8d90 by Molmil
Crystal structure of ChoE N147A mutant in complex with bromide ions
Descriptor: BROMIDE ION, ChoE, GLYCEROL
Authors:Pham, V.D, Shi, R.
Deposit date:2022-06-09
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structures of bacterial acetylcholinesterase ChoE provide insights into the plasticity of catalytic Ser in regulating the active site geometry and the functional state of the SGNH hydrolases
To be published
8D8X
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BU of 8d8x by Molmil
Crystal structure of ChoE in complex with acetate and thiocholine (crystal form 2)
Descriptor: 2-(TRIMETHYLAMMONIUM)ETHYL THIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Pham, V.D, Shi, R.
Deposit date:2022-06-09
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structures of bacterial acetylcholinesterase ChoE provide insights into the plasticity of catalytic Ser in regulating the active site geometry and the functional state of the SGNH hydrolases
To be published
8TW1
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BU of 8tw1 by Molmil
Crystal structure of Lys2972, a phage endolysin targeting Streptococcus thermophilus
Descriptor: Endolysin Lys2972, GLYCEROL, SODIUM ION
Authors:Zhu, X, Moineau, S, Shi, R.
Deposit date:2023-08-18
Release date:2024-03-27
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Fermentation Practices Select for Thermostable Endolysins in Phages.
Mol.Biol.Evol., 41, 2024
6UQX
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BU of 6uqx by Molmil
Crystal structure of ChoE in complex with propionylthiocholine
Descriptor: 2-(TRIMETHYLAMMONIUM)ETHYL THIOL, ChoE, IODIDE ION, ...
Authors:Pham, V.D, Shi, R.
Deposit date:2019-10-21
Release date:2020-05-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural insights into the putative bacterial acetylcholinesterase ChoE and its substrate inhibition mechanism.
J.Biol.Chem., 295, 2020
6UQW
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BU of 6uqw by Molmil
Crystal structure of ChoE in complex with acetate and thiocholine
Descriptor: 2-(TRIMETHYLAMMONIUM)ETHYL THIOL, ACETATE ION, ChoE, ...
Authors:Pham, V.D, Shi, R.
Deposit date:2019-10-21
Release date:2020-05-13
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural insights into the putative bacterial acetylcholinesterase ChoE and its substrate inhibition mechanism.
J.Biol.Chem., 295, 2020

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