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PDB: 1502 件
7D45
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BU of 7d45 by Molmil
eIF2B-eIF2(aP), aP1 complex
分子名称: Eukaryotic translation initiation factor 2 subunit 1, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ...
著者Kashiwagi, K, Ito, T.
登録日2020-09-22
公開日2020-12-09
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B.
Mol.Cell, 81, 2021
7DO6
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BU of 7do6 by Molmil
Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(NADP bound-form)
分子名称: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Short-chain dehydrogenase/reductase SDR
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2020-12-12
公開日2021-02-03
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Crystal structure of l-rhamnose 1-dehydrogenase involved in the nonphosphorylative pathway of l-rhamnose metabolism in bacteria.
Febs Lett., 595, 2021
7D44
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BU of 7d44 by Molmil
eIF2B-eIF2(aP), aP2 complex
分子名称: Eukaryotic translation initiation factor 2 subunit 1, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ...
著者Kashiwagi, K, Ito, T.
登録日2020-09-22
公開日2020-12-09
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B.
Mol.Cell, 81, 2021
7D43
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BU of 7d43 by Molmil
eIF2B-eIF2(aP), aPg complex
分子名称: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 2 subunit 3, ...
著者Kashiwagi, K, Ito, T.
登録日2020-09-22
公開日2020-12-09
最終更新日2021-01-27
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B.
Mol.Cell, 81, 2021
4F1N
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BU of 4f1n by Molmil
Crystal structure of Kluyveromyces polysporus Argonaute with a guide RNA
分子名称: KpAGO, RNA 5'-R(P*UP*AP*AP*AP*AP*AP*AP*AP*A)-3'
著者Nakanishi, K, Weinberg, D.E, Bartel, D.P, Patel, D.J.
登録日2012-05-07
公開日2012-06-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.187 Å)
主引用文献Structure of yeast Argonaute with guide RNA.
Nature, 486, 2012
6K71
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BU of 6k71 by Molmil
eIF2 - eIF2B complex
分子名称: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 2 subunit 3, ...
著者Kashiwagi, K, Yokoyama, T, Ito, T.
登録日2019-06-05
公開日2019-07-10
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structural basis for eIF2B inhibition in integrated stress response.
Science, 364, 2019
4KXT
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BU of 4kxt by Molmil
Structure of human ARGONAUTE1 in complex with guide RNA
分子名称: Protein argonaute-1, RNA
著者Nakanishi, K, Patel, D.J.
登録日2013-05-28
公開日2013-07-31
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.294 Å)
主引用文献Eukaryote-Specific Insertion Elements Control Human ARGONAUTE Slicer Activity.
Cell Rep, 3, 2013
7VUC
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BU of 7vuc by Molmil
Myoglobin mutant L29I/H64G/V68A
分子名称: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Takahashi, K, Korendovych, I.V, Tame, J.R.H.
登録日2021-11-02
公開日2022-07-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献NMR-guided directed evolution.
Nature, 610, 2022
7FGP
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BU of 7fgp by Molmil
Crystal structure of Aureimonas altamirenisis flavin-containing opine dehydrogenase (FAD-bound form)
分子名称: DI(HYDROXYETHYL)ETHER, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2021-07-27
公開日2022-08-31
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Structural basis for Flavin-containing opine dehydrogenase from Aureimonas altamirensis
To Be Published
7DO5
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BU of 7do5 by Molmil
Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(apo-form)
分子名称: SULFATE ION, Short-chain dehydrogenase/reductase SDR
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2020-12-12
公開日2021-02-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.836 Å)
主引用文献Crystal structure of l-rhamnose 1-dehydrogenase involved in the nonphosphorylative pathway of l-rhamnose metabolism in bacteria.
Febs Lett., 595, 2021
6K72
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BU of 6k72 by Molmil
eIF2(aP) - eIF2B complex
分子名称: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 2 subunit 3, ...
著者Kashiwagi, K, Yokoyama, T, Ito, T.
登録日2019-06-05
公開日2019-07-10
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Structural basis for eIF2B inhibition in integrated stress response.
Science, 364, 2019
7CGQ
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BU of 7cgq by Molmil
Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase E147A mutant (NADP and L-arabinose bound form)
分子名称: L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, alpha-L-arabinopyranose
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2020-07-02
公開日2020-07-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.208 Å)
主引用文献Crystal structure of bacterial L-arabinose 1-dehydrogenase in complex with L-arabinose and NADP+
Biochem.Biophys.Res.Commun., 530, 2020
1NYJ
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BU of 1nyj by Molmil
The closed state structure of M2 protein H+ channel by solid state NMR spectroscopy
分子名称: Matrix protein M2
著者Nishimura, K, Kim, S, Zhang, L, Cross, T.A.
登録日2003-02-12
公開日2003-03-25
最終更新日2024-05-22
実験手法SOLID-STATE NMR
主引用文献The closed state of a H+ channel helical bundle combining precise orientational and distance restraints from solid state NMR
Biochemistry, 41, 2002
4HPC
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BU of 4hpc by Molmil
Crystal structure of Nitrophorin 4 from Rhodnius prolixus Complexed with Cysteine at pH 7.4
分子名称: CYSTEINE, Nitrophorin-4, PROTOPORPHYRIN IX CONTAINING FE
著者Nishikawa, K, Ogata, H, Knipp, M.
登録日2012-10-23
公開日2013-03-20
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Complexes of ferriheme nitrophorin 4 with low-molecular weight thiol(ate)s occurring in blood plasma
J.Inorg.Biochem., 122, 2013
4HPB
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BU of 4hpb by Molmil
Crystal structure of Nitrophorin 4 from Rhodnius prolixus Complexed with Beta-Mercaptoethanol at pH 7.4
分子名称: BETA-MERCAPTOETHANOL, Nitrophorin-4, PROTOPORPHYRIN IX CONTAINING FE
著者Nishikawa, K, Ogata, H, Knipp, M.
登録日2012-10-23
公開日2013-03-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Complexes of ferriheme nitrophorin 4 with low-molecular weight thiol(ate)s occurring in blood plasma
J.Inorg.Biochem., 122, 2013
7F67
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BU of 7f67 by Molmil
eIF2B-SFSV NSs-2-eIF2
分子名称: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 3, Non-structural protein NS-S, ...
著者Kashiwagi, K, Ito, T.
登録日2021-06-24
公開日2021-12-01
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.59 Å)
主引用文献eIF2B-capturing viral protein NSs suppresses the integrated stress response.
Nat Commun, 12, 2021
7F66
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BU of 7f66 by Molmil
eIF2B-SFSV NSs-1-eIF2
分子名称: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 3, Non-structural protein NS-S, ...
著者Kashiwagi, K, Ito, T.
登録日2021-06-24
公開日2021-12-01
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.76 Å)
主引用文献eIF2B-capturing viral protein NSs suppresses the integrated stress response.
Nat Commun, 12, 2021
7F64
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eIF2B-SFSV NSs
分子名称: Non-structural protein NS-S, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ...
著者Kashiwagi, K, Ito, T.
登録日2021-06-24
公開日2021-12-08
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.42 Å)
主引用文献eIF2B-capturing viral protein NSs suppresses the integrated stress response.
Nat Commun, 12, 2021
4HPD
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BU of 4hpd by Molmil
Crystal structure of Nitrophorin 4 from Rhodnius prolixus Complexed with homocysteine at pH 7.4
分子名称: 2-AMINO-4-MERCAPTO-BUTYRIC ACID, Nitrophorin-4, PROTOPORPHYRIN IX CONTAINING FE
著者Nishikawa, K, Ogata, H, Knipp, M.
登録日2012-10-23
公開日2013-03-20
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Complexes of ferriheme nitrophorin 4 with low-molecular weight thiol(ate)s occurring in blood plasma
J.Inorg.Biochem., 122, 2013
4HPA
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BU of 4hpa by Molmil
Crystal structure of Nitrophorin 4 from Rhodnius prolixus Complexed with sulfide ion at pH 7.4
分子名称: HYDROSULFURIC ACID, Nitrophorin-4, PROTOPORPHYRIN IX CONTAINING FE
著者Nishikawa, K, Ogata, H, Knipp, M.
登録日2012-10-23
公開日2013-03-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Complexes of ferriheme nitrophorin 4 with low-molecular weight thiol(ate)s occurring in blood plasma
J.Inorg.Biochem., 122, 2013
7D46
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BU of 7d46 by Molmil
eIF2B apo
分子名称: Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, Translation initiation factor eIF-2B subunit delta, ...
著者Kashiwagi, K, Ito, T.
登録日2020-09-22
公開日2020-12-09
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B.
Mol.Cell, 81, 2021
7DO7
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BU of 7do7 by Molmil
Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(NAD and L-rhamnose bound-form)
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Short-chain dehydrogenase/reductase SDR, beta-L-rhamnopyranose
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2020-12-12
公開日2021-02-03
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Crystal structure of l-rhamnose 1-dehydrogenase involved in the nonphosphorylative pathway of l-rhamnose metabolism in bacteria.
Febs Lett., 595, 2021
6A8U
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BU of 6a8u by Molmil
PhoQ sensor domain (wild type): analysis of internal cavity
分子名称: Sensor protein PhoQ
著者Yoshitani, K, Ishii, E, Taniguchi, K, Sugimoto, H, Shiro, Y, Mori, H, Akiyama, Y, Kato, A, Utsumi, R, Eguchi, Y.
登録日2018-07-10
公開日2019-01-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.848 Å)
主引用文献Identification of an internal cavity in the PhoQ sensor domain for PhoQ activity and SafA-mediated control.
Biosci. Biotechnol. Biochem., 83, 2019
6A8V
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BU of 6a8v by Molmil
PhoQ sensor domain (D179R mutant): analysis of internal cavity
分子名称: Sensor protein PhoQ
著者Yoshitani, K, Ishii, E, Taniguchi, K, Sugimoto, H, Shiro, Y, Mori, H, Akiyama, Y, Kato, A, Utsumi, R, Eguchi, Y.
登録日2018-07-10
公開日2019-01-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Identification of an internal cavity in the PhoQ sensor domain for PhoQ activity and SafA-mediated control.
Biosci. Biotechnol. Biochem., 83, 2019
1V7Y
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BU of 1v7y by Molmil
Crystal structure of tryptophan synthase alpha-subunit from Escherichia coli at room temperature
分子名称: SULFATE ION, Tryptophan synthase alpha chain
著者Nishio, K, Morimoto, Y, Ishizuka, M, Ogasahara, K, Yutani, K, Tsukihara, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-12-25
公開日2005-02-15
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Conformational Changes in the alpha-Subunit Coupled to Binding of the beta(2)-Subunit of Tryptophan Synthase from Escherichia coli: Crystal Structure of the Tryptophan Synthase alpha-Subunit Alon
Biochemistry, 44, 2005

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