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PDB: 497 results
3M3T
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BU of 3m3t by Molmil
SARS-CoV main protease monomeric Arg298Ala mutant with N-terminal additional residues (Gly-Ser)
Descriptor: 3C-like proteinase
Authors:Shi, J.H, Song, J.X.
Deposit date:2010-03-10
Release date:2011-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:SARS-CoV main protease with N-terminal extension regulated by mutation on C-terminal domain
To be Published
3M3S
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BU of 3m3s by Molmil
Crystal structure of SARS-COV main protease Asn214Ala mutant with authorize N-terminus
Descriptor: 3C-like proteinase
Authors:Shi, J.H, Song, J.X.
Deposit date:2010-03-10
Release date:2011-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Dynamical Inactivation of the Catalytic Machinery of the SARS-CoV 3C-Like Protease as Triggered by the N214A Mutation on the Extra Domain
To be Published
6M6B
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BU of 6m6b by Molmil
Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase and ATP-gamma-S
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Shi, J, Wen, A, Feng, Y.
Deposit date:2020-03-14
Release date:2020-10-14
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis of Mfd-dependent transcription termination.
Nucleic Acids Res., 48, 2020
7D7D
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BU of 7d7d by Molmil
CryoEM structure of gp45-dependent transcription activation complex
Descriptor: DNA (nontemplate strand), DNA (template strand), DNA polymerase clamp, ...
Authors:Shi, J, Wen, A, Jin, S, Feng, Y.
Deposit date:2020-10-03
Release date:2021-01-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Transcription activation by a sliding clamp.
Nat Commun, 12, 2021
7D7C
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BU of 7d7c by Molmil
CryoEM structure of gp55-dependent RNA polymerase-promoter open complex
Descriptor: DNA (nontemplate strand), DNA (template strand), DNA-directed RNA polymerase subunit alpha, ...
Authors:Shi, J, Wen, A, Jin, S, Feng, Y.
Deposit date:2020-10-03
Release date:2021-01-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Transcription activation by a sliding clamp.
Nat Commun, 12, 2021
5LUS
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BU of 5lus by Molmil
Structures of DHBN domain of Pelecanus crispus BLM helicase
Descriptor: BLM helicase
Authors:Shi, J, Chen, W.-F, Zhang, B, Fan, S.-H, Ai, X, Liu, N.-N, Rety, S, Xi, X.-G.
Deposit date:2016-09-09
Release date:2017-03-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.433 Å)
Cite:A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation.
J. Biol. Chem., 292, 2017
5LUT
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BU of 5lut by Molmil
Structures of DHBN domain of Gallus gallus BLM helicase
Descriptor: BLM helicase, PHOSPHATE ION
Authors:Shi, J, Chen, W.-F, Zhang, B, Fan, S.-H, Ai, X, Liu, N.-N, Rety, S, Xi, X.-G.
Deposit date:2016-09-09
Release date:2017-03-01
Last modified:2017-04-19
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation.
J. Biol. Chem., 292, 2017
5LUP
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BU of 5lup by Molmil
Structures of DHBN domain of human BLM helicase
Descriptor: BLM protein, PHOSPHATE ION, POTASSIUM ION
Authors:Shi, J, Chen, W.-F, Zhang, B, Fan, S.-H, Ai, X, Liu, N.-N, Rety, S, Xi, X.-G.
Deposit date:2016-09-09
Release date:2017-03-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.032 Å)
Cite:A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation.
J. Biol. Chem., 292, 2017
5MK5
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BU of 5mk5 by Molmil
Structures of DHBN domain of human BLM helicase
Descriptor: Bloom syndrome protein, IODIDE ION, POTASSIUM ION
Authors:Shi, J, Chen, W.-F, Zhang, B, Fan, S.-H, Ai, X, Liu, N.-N, Rety, S, Xi, X.-G.
Deposit date:2016-12-02
Release date:2017-03-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation.
J. Biol. Chem., 292, 2017
6M6A
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BU of 6m6a by Molmil
Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Shi, J, Wen, A, Feng, Y.
Deposit date:2020-03-14
Release date:2020-10-14
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (5 Å)
Cite:Structural basis of Mfd-dependent transcription termination.
Nucleic Acids Res., 48, 2020
6M6C
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BU of 6m6c by Molmil
CryoEM structure of Thermus thermophilus RNA polymerase elongation complex
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Shi, J, Wen, A, Feng, Y.
Deposit date:2020-03-14
Release date:2020-10-14
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of Mfd-dependent transcription termination.
Nucleic Acids Res., 48, 2020
3EAJ
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BU of 3eaj by Molmil
Crystal structure of SARS-CoV main protease quadruple mutant STIF/A with two molecules in one asymmetric unit
Descriptor: 3C-like proteinase
Authors:Shi, J.H, Jayaraman, S, Song, J.X.
Deposit date:2008-08-26
Release date:2009-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:crystal structure of SARS-CoV Mpro mutant with two molecules one ASU
To be Published
3E91
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BU of 3e91 by Molmil
Crystal structure of SARS-CoV Mpro mutant in P21 at pH6.9
Descriptor: 3C-like proteinase
Authors:Shi, J.H, Jayaraman, S, Song, J.X.
Deposit date:2008-08-21
Release date:2009-08-25
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural analysis of the activity-enhanced SARS-CoV Mpro C-terminal mutant
To be Published
3EA9
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BU of 3ea9 by Molmil
Crystal structure of SARS-CoV main protease quadruple mutant STIF/A with one molecule in one asymmetric unit
Descriptor: 3C-like proteinase
Authors:Shi, J.H, Jayaraman, S, Song, J.X.
Deposit date:2008-08-25
Release date:2009-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:crystal structure of SARS-CoV Mpro quadruple mutant
To be Published
3EA8
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BU of 3ea8 by Molmil
Crystal structure of SARS-CoV main protease triple mutant STI/A in space group C2
Descriptor: 3C-like proteinase
Authors:Shi, J.H, Jayaraman, S, Song, J.X.
Deposit date:2008-08-25
Release date:2009-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of SARS-CoV Mpro mutant
To be Published
3EA7
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BU of 3ea7 by Molmil
Crystal structure of SARS-CoV main protease triple mutant STI/A in space group P21
Descriptor: 3C-like proteinase
Authors:Shi, J.H, Jayaraman, S, Song, J.X.
Deposit date:2008-08-25
Release date:2009-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure of SARS-CoV Mpro mutant
To be Published
4ET7
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BU of 4et7 by Molmil
Crystal structure of Eph receptor 5
Descriptor: Ephrin type-A receptor 5
Authors:Shi, J.H, Zhu, W.L, Song, J.X.
Deposit date:2012-04-24
Release date:2013-05-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of Eph receptor 5
To be Published
3M3V
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BU of 3m3v by Molmil
SARS-CoV main protease triple mutant STI/A with two N-terminal additional residue (Gly-Ser)
Descriptor: 3C-like proteinase
Authors:Shi, J.H, Song, J.X.
Deposit date:2010-03-10
Release date:2011-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:SARS-CoV main protease with N-terminal extension regulated by mutations on the C-terminal domain
To be Published
3IKK
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BU of 3ikk by Molmil
Crystal structure analysis of msp domain
Descriptor: Vesicle-associated membrane protein-associated protein B/C
Authors:Shi, J, Lua, S, Song, J.
Deposit date:2009-08-06
Release date:2010-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Elimination of the native structure and solubility of the hVAPB MSP domain by the Pro56Ser mutation that causes amyotrophic lateral sclerosis.
Biochemistry, 49, 2010
5GNG
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BU of 5gng by Molmil
Crystal Structure of BioG from Haemophilus influenzae at 1.26 Angstroms resolution
Descriptor: Uncharacterized protein HI_1552
Authors:Shi, J, Guo, Z.
Deposit date:2016-07-20
Release date:2016-12-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:An Atypical alpha / beta-Hydrolase Fold Revealed in the Crystal Structure of Pimeloyl-Acyl Carrier Protein Methyl Esterase BioG from Haemophilus influenzae
Biochemistry, 55, 2016
5H3B
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BU of 5h3b by Molmil
Crystal Structure of SeMet-BioG from Haemophilus influenzae at 1.49 Angstroms resolution
Descriptor: GLYCEROL, ISOPROPYL ALCOHOL, Uncharacterized protein HI_1552
Authors:Shi, J, Guo, Z.
Deposit date:2016-10-21
Release date:2016-12-07
Last modified:2017-02-01
Method:X-RAY DIFFRACTION (1.492 Å)
Cite:An Atypical alpha / beta-Hydrolase Fold Revealed in the Crystal Structure of Pimeloyl-Acyl Carrier Protein Methyl Esterase BioG from Haemophilus influenzae
Biochemistry, 55, 2016
6J31
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BU of 6j31 by Molmil
Crystal Structure Analysis of the Glycotransferase of kitacinnamycin
Descriptor: (2E,2'E)-3,3'-(1,2-phenylene)di(prop-2-enoic acid), DBB-DSG-VAL-MEA-VAL-GLY-GLY-DVA-DLE, kcn28
Authors:Shi, J, Liu, C.L, Zhang, B, Guo, W.J, Zhu, J.P, Xu, X, Xu, Q, Jiao, R.H, Tan, R.X, Ge, H.M.
Deposit date:2019-01-03
Release date:2020-01-15
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.244 Å)
Cite:Genome mining and biosynthesis of kitacinnamycins as a STING activator.
Chem Sci, 10, 2019
6J32
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BU of 6j32 by Molmil
Crystal Structure Analysis of the Glycotransferase of kitacinnamycin
Descriptor: Kcn28
Authors:Shi, J, Liu, C.L, Zhang, B, Guo, W.J, Zhu, J.P, Xu, X, Xu, Q, Jiao, R.H, Tan, R.X, Ge, H.M.
Deposit date:2019-01-03
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Genome mining and biosynthesis of kitacinnamycins as a STING activator.
Chem Sci, 10, 2019
6K4Y
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BU of 6k4y by Molmil
CryoEM structure of sigma appropriation complex
Descriptor: 10 kDa anti-sigma factor, DNA (60-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Shi, J, Wen, A, Feng, Y.
Deposit date:2019-05-27
Release date:2019-08-07
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Structural basis of sigma appropriation.
Nucleic Acids Res., 47, 2019
2QCY
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BU of 2qcy by Molmil
Crystal Structure of a monomeric form of Severe Acute Respiratory Syndrome (SARS) 3C-like protease mutant
Descriptor: 3C-like proteinase
Authors:Shi, J.H, Sivaraman, J, Song, J.X.
Deposit date:2007-06-20
Release date:2008-03-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mechanism for controlling the dimer-monomer switch and coupling dimerization to catalysis of the severe acute respiratory syndrome coronavirus 3C-like protease.
J.Virol., 82, 2008

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