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PDB: 46 results

1HA1
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BU of 1ha1 by Molmil
HNRNP A1 (RBD1,2) FROM HOMO SAPIENS
Descriptor: HNRNP A1
Authors:Shamoo, Y, Krueger, U, Rice, L, Williams, K.R, Steitz, T.A.
Deposit date:1996-10-30
Release date:1997-05-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of the two RNA binding domains of human hnRNP A1 at 1.75 A resolution.
Nat.Struct.Biol., 4, 1997
1GPC
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BU of 1gpc by Molmil
CORE GP32, DNA-BINDING PROTEIN
Descriptor: PROTEIN (CORE GP32), ZINC ION
Authors:Shamoo, Y, Friedman, A.M, Parsons, M.R, Konigsberg, W.H, Steitz, T.A.
Deposit date:1995-06-01
Release date:1995-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA.
Nature, 376, 1995
6C84
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BU of 6c84 by Molmil
Crystal structure of PBP5 from Enterococcus faecium
Descriptor: Penicillin-binding protein
Authors:Shamoo, Y, Davlieva, M.
Deposit date:2018-01-24
Release date:2019-02-06
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.511 Å)
Cite:Crystal structure of PBP5 from Enterococcus faecium
To Be Published
6C0Z
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BU of 6c0z by Molmil
Crystal structure of Efga from Methylobacterium extorquens in complex with formaldehyde
Descriptor: Efga, FORMIC ACID, oxydimethanol
Authors:Shamoo, Y, Davlieva, M.
Deposit date:2018-01-03
Release date:2019-01-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structure of Efga form Methylobacterium extorquens in complex with formaldehyde
To Be Published
1B8H
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BU of 1b8h by Molmil
SLIDING CLAMP, DNA POLYMERASE
Descriptor: DNA POLYMERASE PROCESSIVITY COMPONENT, DNA POLYMERASE fragment
Authors:Shamoo, Y, Steitz, T.A.
Deposit date:1999-02-01
Release date:1999-02-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3 Å)
Cite:Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex.
Cell(Cambridge,Mass.), 99, 1999
6BWS
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BU of 6bws by Molmil
Crystal structure of Efga from Methylobacterium extorquens
Descriptor: Glycolate utilization protein
Authors:Shamoo, Y, Davlieva, M.
Deposit date:2017-12-15
Release date:2019-01-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of Efga from Methylobacterium extorquens
To Be Published
1B77
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BU of 1b77 by Molmil
BUILDING A REPLISOME STRUCTURE FROM INTERACTING PIECES: A SLIDING CLAMP COMPLEXED WITH AN INTERACTION PEPTIDE FROM DNA POLYMERASE
Descriptor: PROTEIN (SLIDING CLAMP)
Authors:Shamoo, Y, Steitz, T.A.
Deposit date:1999-01-27
Release date:1999-02-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex.
Cell(Cambridge,Mass.), 99, 1999
1CLQ
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BU of 1clq by Molmil
CRYSTAL STRUCTURE OF A REPLICATION FORK DNA POLYMERASE EDITING COMPLEX AT 2.7 A RESOLUTION
Descriptor: CALCIUM ION, DNA (5'-D(*AP*GP*TP*AP*GP*TP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*AP*CP*TP*AP*CP*T)-3'), ...
Authors:Shamoo, Y, Steitz, T.A.
Deposit date:1999-04-30
Release date:1999-10-28
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex.
Cell(Cambridge,Mass.), 99, 1999
8D84
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BU of 8d84 by Molmil
E. faecium MurAA in complex with UDP-N-acetylmuramic acid (UNAM) and a covalent adduct of PEP with Cys119
Descriptor: (2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid, UDP-N-acetylglucosamine 1-carboxyvinyltransferase
Authors:Zhou, Y, Shamoo, Y.
Deposit date:2022-06-07
Release date:2023-07-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:E. faecium MurAA in complex with fosfomycin and UNAG
To Be Published
8U55
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BU of 8u55 by Molmil
Crystal structure of Enterococcus faecium EnGen25 Penicillin-binding protein 5 (PBP5)
Descriptor: Penicillin-binding protein 5
Authors:Pemberton, O.A, Shamoo, Y.
Deposit date:2023-09-12
Release date:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of Enterococcus faecium EnGen25 Penicillin-binding protein 5 (PBP5)
To Be Published
2A1K
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BU of 2a1k by Molmil
RB69 single-stranded DNA binding protein core domain
Descriptor: ZINC ION, gp32 single stranded DNA binding protein
Authors:Sun, S, Geng, L, Shamoo, Y.
Deposit date:2005-06-20
Release date:2006-05-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and enzymatic properties of a chimeric bacteriophage RB69 DNA polymerase and single-stranded DNA binding protein with increased processivity.
Proteins, 65, 2006
7TB0
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BU of 7tb0 by Molmil
E. faecium MurAA in complex with fosfomycin and UNAG
Descriptor: CHLORIDE ION, POTASSIUM ION, SODIUM ION, ...
Authors:Zhou, Y, Shamoo, Y.
Deposit date:2021-12-21
Release date:2022-12-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Enolpyruvate transferase MurAA A149E , identified during adaptation of Enterococcus faecium to daptomycin, increases stability of MurAA-MurG interaction.
J.Biol.Chem., 299, 2023
5HEV
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BU of 5hev by Molmil
Crystal Structure of the beryllofluoride-activated LiaR from Enterococcus faecium
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Response regulator protein VraR
Authors:Davlieva, M, Shamoo, Y.
Deposit date:2016-01-06
Release date:2016-11-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.192 Å)
Cite:An Adaptive Mutation in Enterococcus faecium LiaR Associated with Antimicrobial Peptide Resistance Mimics Phosphorylation and Stabilizes LiaR in an Activated State.
J.Mol.Biol., 428, 2016
4PDB
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BU of 4pdb by Molmil
CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS RIBOSOMAL PROTEIN S8 IN COMPLEX WITH AN RNA APTAMER
Descriptor: 30S ribosomal protein S8, SELEX RNA aptamer
Authors:Davlieva, M, Shamoo, Y, Nikonowicz, E.P.
Deposit date:2014-04-17
Release date:2014-09-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis.
Nucleic Acids Res., 42, 2014
3P9U
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BU of 3p9u by Molmil
Crystal structure of TetX2 from Bacteroides thetaiotaomicron with substrate analogue
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION, TetX2 protein
Authors:Walkiewicz, K, Davlieva, M, Sun, C, Lau, K, Shamoo, Y.
Deposit date:2010-10-18
Release date:2011-04-27
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Crystal structure of Bacteroides thetaiotaomicron TetX2: a tetracycline degrading monooxygenase at 2.8 A resolution.
Proteins, 79, 2011
2EU8
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BU of 2eu8 by Molmil
Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (Q199R)
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, CALCIUM ION, ...
Authors:Chen, S, Shamoo, Y.
Deposit date:2005-10-28
Release date:2006-06-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:In vivo molecular evolution reveals biophysical origins of organismal fitness.
Mol.Cell, 22, 2006
2QAJ
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BU of 2qaj by Molmil
Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (Q199R/G213E)
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
Authors:Counago, R, Wilson, C.J, Myers, J, Wu, G, Shamoo, Y.
Deposit date:2007-06-15
Release date:2008-04-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (Q199R/G213E)
To be Published
2BCX
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BU of 2bcx by Molmil
Crystal structure of calmodulin in complex with a ryanodine receptor peptide
Descriptor: CALCIUM ION, Calmodulin, Ryanodine receptor 1
Authors:Maximciuc, A.A, Shamoo, Y, MacKenzie, K.R.
Deposit date:2005-10-19
Release date:2006-10-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Complex of calmodulin with a ryanodine receptor target reveals a novel, flexible binding mode.
Structure, 14, 2006
1PGZ
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BU of 1pgz by Molmil
Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
Descriptor: 5'-D(*T*TP*AP*GP*GP*GP*TP*TP*AP*GP*(6MI)P*G)-3', Heterogeneous nuclear ribonucleoprotein A1
Authors:Myers, J.C, Moore, S.A, Shamoo, Y.
Deposit date:2003-05-28
Release date:2003-11-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-based incorporation of 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures
J.Biol.Chem., 278, 2003
1PO6
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BU of 1po6 by Molmil
Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
Descriptor: 5'-D(*T*AP*GP*GP*(6MI)P*TP*TP*AP*GP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein A1
Authors:Myers, J.C, Moore, S.A, Shamoo, Y.
Deposit date:2003-06-13
Release date:2003-11-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-based incorporation of 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures
J.BIOL.CHEM., 278, 2003
2ATQ
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BU of 2atq by Molmil
RB69 single-stranded DNA binding protein-DNA polymerase fusion
Descriptor: DNA polymerase, GUANOSINE-5'-DIPHOSPHATE, ZINC ION, ...
Authors:Sun, S, Geng, L, Shamoo, Y.
Deposit date:2005-08-25
Release date:2006-05-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure and enzymatic properties of a chimeric bacteriophage RB69 DNA polymerase and single-stranded DNA binding protein with increased processivity.
Proteins, 65, 2006
3V3O
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BU of 3v3o by Molmil
Crystal structure of TetX2 T280A: an adaptive mutant in complex with tigecycline
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION, TIGECYCLINE, ...
Authors:Walkiewicz, K, Shamoo, Y.
Deposit date:2011-12-13
Release date:2013-01-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of TetX2 T280A: an adaptive mutant in complex with tigecycline
To be Published
3V3N
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BU of 3v3n by Molmil
Crystal structure of TetX2 T280A: an adaptive mutant in complex with minocycline
Descriptor: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION, ...
Authors:Walkiewicz, K, Shamoo, Y.
Deposit date:2011-12-13
Release date:2013-01-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.703 Å)
Cite:Crystal structure of TetX2 T280A: an adaptive mutant in complex with minocycline
To be Published
3F6S
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BU of 3f6s by Molmil
Desulfovibrio desulfuricans (ATCC 29577) oxidized flavodoxin alternate conformers
Descriptor: FLAVIN MONONUCLEOTIDE, Flavodoxin
Authors:Guelker, M, Shamoo, Y.
Deposit date:2008-11-06
Release date:2009-06-09
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Pseudosymmetry, high copy number and twinning complicate the structure determination of Desulfovibrio desulfuricans (ATCC 29577) flavodoxin.
Acta Crystallogr.,Sect.D, 65, 2009
3F90
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BU of 3f90 by Molmil
Desulfovibrio desulfuricans (ATCC 29577) semiquinone flavodoxin
Descriptor: FLAVIN MONONUCLEOTIDE, Flavodoxin
Authors:Guelker, M, Shamoo, Y.
Deposit date:2008-11-13
Release date:2009-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of Desulfovibrio desulfuricans (ATCC 29577) flavodoxin in the semiquinone state
To be Published

 

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