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PDB: 25 results
3L3P
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BU of 3l3p by Molmil
Crystal structure of the C-terminal domain of Shigella type III effector IpaH9.8, with a novel domain swap
Descriptor: IpaH9.8
Authors:Seyedarabi, A, Sullivan, J.A, Sasakawa, C, Pickersgill, R.W.
Deposit date:2009-12-17
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:A disulfide driven domain swap switches off the activity of Shigella IpaH9.8 E3 ligase
Febs Lett., 584, 2010
6IYI
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BU of 6iyi by Molmil
X-ray sequence and high resolution crystal structure of Starry sturgeon methemoglobin
Descriptor: Alpha chain, Beta chain, GLYCEROL, ...
Authors:Seyedarabi, A.
Deposit date:2018-12-16
Release date:2019-04-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel X-ray sequences and crystal structures of Persian and Starry sturgeon methemoglobins: Highlighting the role of heme pocket waters in causing autoxidation.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
6IYH
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BU of 6iyh by Molmil
X-ray sequence and high resolution crystal structure of Persian sturgeon methemoglobin
Descriptor: Alpha chain, Beta chain, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Seyedarabi, A.
Deposit date:2018-12-16
Release date:2019-04-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Novel X-ray sequences and crystal structures of Persian and Starry sturgeon methemoglobins: Highlighting the role of heme pocket waters in causing autoxidation
Biochim Biophys Acta Proteins Proteom, 1867, 2019
3NJR
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BU of 3njr by Molmil
Crystal structure of C-terminal domain of precorrin-6Y C5,15-methyltransferase from Rhodobacter capsulatus
Descriptor: GLYCEROL, Precorrin-6y methylase, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Seyedarabi, A, Pickersgill, R.W.
Deposit date:2010-06-17
Release date:2011-06-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:An enzyme-trap approach allows isolation of intermediates in cobalamin biosynthesis.
Nat.Chem.Biol., 8, 2012
3ND1
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BU of 3nd1 by Molmil
Crystal structure of Precorrin-6A synthase from Rhodobacter capsulatus
Descriptor: ACETATE ION, Precorrin-6A synthase/CobF protein, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Seyedarabi, A, Pickersgill, R.W.
Deposit date:2010-06-06
Release date:2011-06-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Precorrin-6A synthase from Rhodobacter capsulatus
To be Published
3NDC
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BU of 3ndc by Molmil
Crystal structure of Precorrin-4 C11-methyltransferase from Rhodobacter capsulatus
Descriptor: Precorrin-4 C(11)-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Seyedarabi, A, Pickersgill, R.W.
Deposit date:2010-06-07
Release date:2011-06-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Precorrin-4 C11-methyltransferase from Rhodobacter capsulatus
To be Published
3NEI
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BU of 3nei by Molmil
Crystal structure of Precorrin-4 C11-methyltransferase from Rhodobacter capsulatus (no SAH bound)
Descriptor: GLYCEROL, Precorrin-4 C(11)-methyltransferase, SULFATE ION
Authors:Seyedarabi, A, Pickersgill, R.W.
Deposit date:2010-06-08
Release date:2011-06-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Precorrin-4 C11-methyltransferase from Rhodobacter capsulatus (no SAH bound)
To be Published
6ABZ
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BU of 6abz by Molmil
Crystal Structure of HEWL in deionized water
Descriptor: CHLORIDE ION, Lysozyme C, S-1,2-PROPANEDIOL, ...
Authors:Seyedarabi, A, Seraj, Z.
Deposit date:2018-07-24
Release date:2019-07-31
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The role of Cinnamaldehyde and Phenyl ethyl alcohol as two types of precipitants affecting protein hydration levels.
Int.J.Biol.Macromol., 146, 2019
6AGR
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BU of 6agr by Molmil
Structure of HEWL co-crystallised with phenylethyl alcohol
Descriptor: 1,2-ETHANEDIOL, 2-PHENYL-ETHANOL, ACETATE ION, ...
Authors:Seyedarabi, A, Seraj, Z.
Deposit date:2018-08-13
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:The role of Cinnamaldehyde and Phenyl ethyl alcohol as two types of precipitants affecting protein hydration levels.
Int.J.Biol.Macromol., 146, 2019
6AGN
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BU of 6agn by Molmil
Structure of HEWL co-crystallised with Cinnamaldehyde
Descriptor: (2E)-3-phenylprop-2-enal, (2Z)-3-phenylprop-2-enal, 1,2-ETHANEDIOL, ...
Authors:Seyedarabi, A, Seraj, Z.
Deposit date:2018-08-13
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:The role of Cinnamaldehyde and Phenyl ethyl alcohol as two types of precipitants affecting protein hydration levels.
Int.J.Biol.Macromol., 146, 2019
6ADF
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BU of 6adf by Molmil
Structure of HEWL co-crystallised with TEMED
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Seyedarabi, A, Seraj, Z.
Deposit date:2018-07-31
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:The aroma of TEMED as an activation and stabilizing signal for the antibacterial enzyme HEWL.
Plos One, 15, 2020
6ABN
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BU of 6abn by Molmil
Crystal Structure of HEWL at pH 8.6
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Seyedarabi, A, Seraj, Z.
Deposit date:2018-07-22
Release date:2019-07-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:The aroma of TEMED as an activation and stabilizing signal for the antibacterial enzyme HEWL.
Plos One, 15, 2020
6AC2
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BU of 6ac2 by Molmil
Crystal Structure of HEWL at pH 2.2
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Seyedarabi, A, Seraj, Z.
Deposit date:2018-07-24
Release date:2019-07-31
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Cinnamaldehyde and Phenyl Ethyl Alcohol promote the entrapment of intermediate species of HEWL, as revealed by structural, kinetics and thermal stability studies.
Sci Rep, 9, 2019
1XEU
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BU of 1xeu by Molmil
Crystal Structure of Internalin C from Listeria monocytogenes
Descriptor: internalin C
Authors:Ooi, A, Hussain, S, Seyedarabi, A, Pickersgill, R.W.
Deposit date:2004-09-13
Release date:2005-08-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of internalin C from Listeria monocytogenes.
Acta Crystallogr.,Sect.D, 62, 2006
4AU1
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BU of 4au1 by Molmil
Crystal Structure of CobH (precorrin-8x methyl mutase) complexed with C5 desmethyl-HBA
Descriptor: DESMETHYL-HBA, PRECORRIN-8X METHYLMUTASE, SULFATE ION
Authors:Deery, E, Lawrence, A.D, Schroeder, S, Taylor, S.L, Seyedarabi, A, Vevodova, J, Wilson, K.S, Brown, D, Geeves, M.A, Howard, M.J, Pickersgill, R.W, Warren, M.J.
Deposit date:2012-05-11
Release date:2012-09-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:An Enzyme-Trap Approach Allows Isolation of Intermediates in Cobalamin Biosynthesis
Nat.Chem.Biol., 8, 2012
2O0W
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BU of 2o0w by Molmil
Pectate lyase bound to hexasaccharide compound IV
Descriptor: CALCIUM ION, Pectate lyase
Authors:Pickersgill, R.W, Seyedarabi, A.
Deposit date:2006-11-28
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and thermodynamic insights into the mechanism of pectate lyase
To be Published
2O17
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BU of 2o17 by Molmil
Pectate lyase bound to hexasaccharide
Descriptor: CALCIUM ION, Pectate lyase, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Pickersgill, R.W, Seyedarabi, A.
Deposit date:2006-11-28
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
Biochemistry, 49, 2010
2NZM
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BU of 2nzm by Molmil
Hexasaccharide I bound to Bacillus subtilis pectate lyase
Descriptor: CALCIUM ION, Pectate lyase, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Pickersgill, R.W, Seyedarabi, A.
Deposit date:2006-11-24
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
Biochemistry, 49, 2010
2O04
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BU of 2o04 by Molmil
Pectate lyase bound to hexasaccharide compound II
Descriptor: CALCIUM ION, Pectate lyase, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Pickersgill, R.W, Seyedarabi, A.
Deposit date:2006-11-27
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
Biochemistry, 49, 2010
2O1D
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BU of 2o1d by Molmil
Pectate lyase bound to trisaccharide
Descriptor: CALCIUM ION, Pectate lyase, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Pickersgill, R.W, Seyedarabi, A.
Deposit date:2006-11-28
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
Biochemistry, 49, 2010
2O0V
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BU of 2o0v by Molmil
Pectate lyase bound to hexasaccharide compound III
Descriptor: CALCIUM ION, Pectate lyase, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid
Authors:Pickersgill, R.W, Seyedarabi, A.
Deposit date:2006-11-28
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
Biochemistry, 49, 2010
6AD5
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BU of 6ad5 by Molmil
Crystal Structure of HEWL in complex with TEMED (in the aroma form) after 24 hours under fibrillation conditions
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Seraj, Z, Seyedarabi, A.
Deposit date:2018-07-30
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The aroma of TEMED as an activation and stabilizing signal for the antibacterial enzyme HEWL.
Plos One, 15, 2020
6AEA
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BU of 6aea by Molmil
Crystal Structure of HEWL in complex with TEMED (in the aroma form) after 5 hours under fibrillation conditions
Descriptor: CHLORIDE ION, Lysozyme C, N,N,N',N'-tetramethylethane-1,2-diamine, ...
Authors:Seraj, Z, Seyedarabi, A.
Deposit date:2018-08-04
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The aroma of TEMED as an activation and stabilizing signal for the antibacterial enzyme HEWL.
Plos One, 15, 2020
6AHL
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BU of 6ahl by Molmil
Crystal Structure of HEWL in complex with Cinnamaldehyde (in the aroma form) after 5 hours under fibrillation conditions
Descriptor: 4-CARBOXYCINNAMIC ACID, ACETATE ION, CHLORIDE ION, ...
Authors:Seraj, Z, Seyedarabi, A.
Deposit date:2018-08-19
Release date:2019-08-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Cinnamaldehyde and Phenyl Ethyl Alcohol promote the entrapment of intermediate species of HEWL, as revealed by structural, kinetics and thermal stability studies.
Sci Rep, 9, 2019
6AHH
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BU of 6ahh by Molmil
Crystal Structure of HEWL in complex with Phenylethyl alcohol (in the aroma form) after 5 hours under fibrillation conditions
Descriptor: 2-PHENYL-ETHANOL, CHLORIDE ION, Lysozyme C, ...
Authors:Seraj, Z, Seyedarabi, A.
Deposit date:2018-08-18
Release date:2019-08-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Cinnamaldehyde and Phenyl Ethyl Alcohol promote the entrapment of intermediate species of HEWL, as revealed by structural, kinetics and thermal stability studies.
Sci Rep, 9, 2019

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