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PDB: 200 件
6KNF
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BU of 6knf by Molmil
CryoEM map and model of Nitrite Reductase at pH 6.2
分子名称: COPPER (II) ION, Copper-containing nitrite reductase
著者Adachi, N, Yamaguchi, T, Moriya, T, Kawasaki, M, Koiwai, K, Shinoda, A, Yamada, Y, Yumoto, F, Kohzuma, T, Senda, T.
登録日2019-08-05
公開日2020-08-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.99 Å)
主引用文献2.85 and 2.99 angstrom resolution structures of 110 kDa nitrite reductase determined by 200 kV cryogenic electron microscopy.
J.Struct.Biol., 213, 2021
7DNM
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BU of 7dnm by Molmil
Crystal structure of the AgCarB2-C2 complex
分子名称: AP_endonuc_2 domain-containing protein, AgCarC2, IODIDE ION, ...
著者Senda, M, Kumano, T, Watanabe, S, Kobayashi, M, Senda, T.
登録日2020-12-10
公開日2021-10-20
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for the metabolism of xenobiotic C-glycosides by intestinal bacteria
Nat Commun, 2021
6KNG
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BU of 6kng by Molmil
CryoEM map and model of Nitrite Reductase at pH 8.1
分子名称: COPPER (II) ION, Copper-containing nitrite reductase
著者Adachi, N, Yamaguchi, T, Moriya, T, Kawasaki, M, Koiwai, K, Shinoda, A, Yamada, Y, Yumoto, F, Kohzuma, T, Senda, T.
登録日2019-08-05
公開日2020-08-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献2.85 and 2.99 angstrom resolution structures of 110 kDa nitrite reductase determined by 200 kV cryogenic electron microscopy.
J.Struct.Biol., 213, 2021
1KJO
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BU of 1kjo by Molmil
Thermolysin complexed with Z-L-Threonine (benzyloxycarbonyl-L-Threonine)
分子名称: CALCIUM ION, THREONINE, Thermolysin, ...
著者Senda, M, Senda, T, Kidokoro, S.
登録日2001-12-05
公開日2002-12-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of Thermolysin in complex with its inhibitors
To be Published
1KRO
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BU of 1kro by Molmil
Thermolysin complexed with Z-D-Threonine (benzyloxycarbonyl-D-Threonine)
分子名称: CALCIUM ION, D-THREONINE, Thermolysin, ...
著者Senda, M, Senda, T, Kidokoro, S.
登録日2002-01-10
公開日2003-01-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure analyses of thermolysin in complex with its inhibitors.
To be Published
1KJP
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BU of 1kjp by Molmil
Thermolysin complexed with Z-L-Glutamic acid (benzyloxycarbonyl-L-Glutamic acid)
分子名称: CALCIUM ION, GLUTAMIC ACID, Thermolysin, ...
著者Senda, M, Senda, T, Kidokoro, S.
登録日2001-12-05
公開日2002-12-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure analyses of thermolysin in complex with its inhibitors
To be Published
7DRD
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BU of 7drd by Molmil
Cryo-EM structure of DgpB-C at 2.85 angstrom resolution
分子名称: AP_endonuc_2 domain-containing protein, DgpB
著者Mori, T, Moriya, T, Adachi, N, Senda, T, Abe, I.
登録日2020-12-28
公開日2021-12-08
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7DRE
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BU of 7dre by Molmil
Cryo-EM structure of DfgA-B at 2.54 angstrom resolution
分子名称: DfgB, Sugar phosphate isomerase/epimerase
著者Mori, T, Moriya, T, Adachi, N, Senda, T, Abe, I.
登録日2020-12-28
公開日2021-12-08
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.54 Å)
主引用文献C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
2IO5
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BU of 2io5 by Molmil
Crystal structure of the CIA- histone H3-H4 complex
分子名称: ASF1A protein, Histone H3.1, Histone H4
著者Natsume, R, Akai, Y, Horikoshi, M, Senda, T.
登録日2006-10-10
公開日2007-02-27
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4.
Nature, 446, 2007
1C4X
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BU of 1c4x by Molmil
2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE (BPHD) FROM RHODOCOCCUS SP. STRAIN RHA1
分子名称: PROTEIN (2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE)
著者Nandhagopal, N, Senda, T, Mitsui, Y.
登録日1999-09-30
公開日1999-10-01
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Three-Dimensional Structure of Microbial 2-Hydroxyl-6-Oxo-6-Phenylhexa-2,4- Dienoic Acid (Hpda) Hydrolase (Bphd Enzyme) from Rhodococcus Sp. Strain Rha1, in the Pcb Degradation Pathway
Proc.Jpn.Acad.,Ser.B, 73, 1997
6KEM
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BU of 6kem by Molmil
Crystal structure of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in apo-form 2
分子名称: Glutathione S-transferase E14
著者Koiwai, K, Inaba, K, Morohashi, K, Yumoto, F, Niwa, R, Senda, T.
登録日2019-07-04
公開日2019-10-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KEL
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BU of 6kel by Molmil
Crystal structure of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in apo-form
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glutathione S-transferase E14
著者Koiwai, K, Inaba, K, Morohashi, K, Yumoto, F, Senda, T, Niwa, R.
登録日2019-07-04
公開日2019-10-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KEQ
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BU of 6keq by Molmil
Crystal structure of D113A mutant of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in apo-form
分子名称: Glutathione S-transferase E14
著者Koiwai, K, Inaba, K, Morohashi, K, Yumoto, F, Niwa, R, Senda, T.
登録日2019-07-04
公開日2019-10-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KER
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BU of 6ker by Molmil
Crystal structure of D113A mutant of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in glutathione-bound form
分子名称: GLUTATHIONE, Glutathione S-transferase E14
著者Koiwai, K, Inaba, K, Morohashi, K, Yumoto, F, Niwa, R, Senda, T.
登録日2019-07-04
公開日2019-10-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KEN
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BU of 6ken by Molmil
Crystal structure of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in glutathione-bound form
分子名称: GLUTATHIONE, Glutathione S-transferase E14
著者Koiwai, K, Inaba, K, Morohashi, K, Yumoto, F, Niwa, R, Senda, T.
登録日2019-07-04
公開日2019-10-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KEO
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BU of 6keo by Molmil
Crystal structure of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in 17beta-estradiol-bound form
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ESTRADIOL, Glutathione S-transferase E14
著者Koiwai, K, Inaba, K, Morohashi, K, Yumoto, F, Niwa, R, Senda, T.
登録日2019-07-04
公開日2019-10-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
6KEP
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BU of 6kep by Molmil
Crystal structure of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in 17beta-estradiol- and glutathione-bound form
分子名称: ESTRADIOL, GLUTATHIONE, Glutathione S-transferase E14
著者Koiwai, K, Inaba, K, Morohashi, K, Yumoto, F, Niwa, R, Senda, T.
登録日2019-07-04
公開日2019-10-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo.
J.Biol.Chem., 295, 2020
3WRC
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BU of 3wrc by Molmil
Crystal structure of the anaerobic DesB-Protocatechuate (PCA) complex
分子名称: 3,4-DIHYDROXYBENZOIC ACID, FE (II) ION, Gallate dioxygenase
著者Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T.
登録日2014-02-21
公開日2014-04-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR9
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BU of 3wr9 by Molmil
Crystal structure of the Anaerobic DesB-Gallate complex
分子名称: 3,4,5-trihydroxybenzoic acid, FE (II) ION, Gallate dioxygenase
著者Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T.
登録日2014-02-21
公開日2014-04-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WRA
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BU of 3wra by Molmil
Crystal structure of the desB-Gallate complex exposed to Aerobic Atomosphere
分子名称: FE (II) ION, Gallate dioxygenase
著者Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T.
登録日2014-02-21
公開日2014-04-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR3
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BU of 3wr3 by Molmil
Crystal structure of the anaerobic DesB-gallate complex
分子名称: 3,4,5-trihydroxybenzoic acid, FE (II) ION, Gallate dioxygenase
著者Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T.
登録日2014-02-13
公開日2014-04-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WKU
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BU of 3wku by Molmil
Crystal structure of the anaerobic DesB-gallate complex
分子名称: 3,4,5-trihydroxybenzoic acid, FE (III) ION, Gallate dioxygenase
著者Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T.
登録日2013-10-31
公開日2014-04-30
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR8
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BU of 3wr8 by Molmil
Crystal structure of DesB from Sphingobium sp. strain SYK-6
分子名称: FE (II) ION, Gallate dioxygenase
著者Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T.
登録日2014-02-21
公開日2014-04-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WPM
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BU of 3wpm by Molmil
Crystal structure of the anaerobic DesB-gallate complex by co-crystallization
分子名称: 3,4,5-trihydroxybenzoic acid, FE (III) ION, Gallate dioxygenase
著者Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T.
登録日2014-01-14
公開日2014-04-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR4
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BU of 3wr4 by Molmil
Crystal structure of the anaerobic DesB-gallate complex
分子名称: 3,4,5-trihydroxybenzoic acid, FE (III) ION, Gallate dioxygenase
著者Sugimoto, K, Senda, M, Kasai, D, Fukuda, M, Masai, E, Senda, T.
登録日2014-02-13
公開日2014-04-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014

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