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PDB: 121 件
7EM4
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BU of 7em4 by Molmil
Crystal structure of the PI5P4Kbeta F205L-ITP complex
分子名称: INOSINE-5'-DIPHOSPHATE, Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, [[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Senda, M, Senda, T.
登録日2021-04-13
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 30, 2022
7EM3
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BU of 7em3 by Molmil
Crystal structure of the PI5P4Kbeta-2a-ATP complex
分子名称: Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, [(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate, [[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Senda, M, Senda, T.
登録日2021-04-13
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 30, 2022
7C5W
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BU of 7c5w by Molmil
Crystal structure of the iota-carbonic anhydrase from cyanobacterium complexed with iodide
分子名称: IODIDE ION, iota-carbonic anhydrase
著者Senda, M, Senda, T.
登録日2020-05-20
公開日2021-04-28
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Characterization of a novel type of carbonic anhydrase that acts without metal cofactors.
Bmc Biol., 19, 2021
7C5X
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BU of 7c5x by Molmil
Crystal structure of the iota-carbonic anhydrase from eukaryotic microalga complexed with bicarbonate
分子名称: BICARBONATE ION, iota-carbonic anhydrase
著者Senda, M, Senda, T.
登録日2020-05-20
公開日2021-04-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Characterization of a novel type of carbonic anhydrase that acts without metal cofactors.
Bmc Biol., 19, 2021
7C5V
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BU of 7c5v by Molmil
Crystal structure of the iota-carbonic anhydrase from cyanobacterium complexed with bicarbonate
分子名称: BICARBONATE ION, iota-carbonic anhydrase
著者Senda, M, Senda, T.
登録日2020-05-20
公開日2021-04-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Characterization of a novel type of carbonic anhydrase that acts without metal cofactors.
Bmc Biol., 19, 2021
7C5Y
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BU of 7c5y by Molmil
Crystal structure of the iota-carbonic anhydrase from eukaryotic microalga complexed with iodide
分子名称: IODIDE ION, iota-carbonic anhydrase
著者Senda, M, Senda, T.
登録日2020-05-20
公開日2021-04-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Characterization of a novel type of carbonic anhydrase that acts without metal cofactors.
Bmc Biol., 19, 2021
7EM6
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BU of 7em6 by Molmil
Crystal structure of the PI5P4Kbeta N203D-ITP complex
分子名称: INOSINE-5'-DIPHOSPHATE, Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, [[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Senda, M, Senda, T.
登録日2021-04-13
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 30, 2022
7EM8
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BU of 7em8 by Molmil
Crystal structure of the PI5P4Kbeta T201M-2a-ATP complex
分子名称: Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, [(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate, [[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Senda, M, Senda, T.
登録日2021-04-13
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 30, 2022
7DNM
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BU of 7dnm by Molmil
Crystal structure of the AgCarB2-C2 complex
分子名称: AP_endonuc_2 domain-containing protein, AgCarC2, IODIDE ION, ...
著者Senda, M, Kumano, T, Watanabe, S, Kobayashi, M, Senda, T.
登録日2020-12-10
公開日2021-10-20
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for the metabolism of xenobiotic C-glycosides by intestinal bacteria
Nat Commun, 2021
7DVE
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BU of 7dve by Molmil
Crystal structure of FAD-dependent C-glycoside oxidase
分子名称: 6'''-hydroxyparomomycin C oxidase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
著者Senda, M, Watanabe, S, Kumano, T, Kobayashi, M, Senda, T.
登録日2021-01-13
公開日2021-09-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献FAD-dependent C -glycoside-metabolizing enzymes in microorganisms: Screening, characterization, and crystal structure analysis.
Proc.Natl.Acad.Sci.USA, 118, 2021
7D98
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BU of 7d98 by Molmil
Crystal structure of full-length CbnR complexed with the target DNA complex
分子名称: DNA (56-mer), LysR-type regulatory protein
著者Senda, M, Giannopoulou, E, Senda, T.
登録日2020-10-12
公開日2021-03-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Crystal structure of the full-length LysR-type transcription regulator CbnR in complex with promoter DNA.
Febs J., 288, 2021
4DVY
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BU of 4dvy by Molmil
Crystal structure of the Helicobacter pylori CagA oncoprotein
分子名称: Cytotoxicity-associated immunodominant antigen
著者Hayashi, T, Senda, M, Morohashi, H, Higashi, H, Horio, M, Kashiba, Y, Nagase, L, Sasaya, D, Shimizu, T, Venugopalan, N, Kumeta, H, Noda, N, Inagaki, F, Senda, T, Hatakeyama, M.
登録日2012-02-23
公開日2012-07-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Tertiary Structure-Function Analysis Reveals the Pathogenic Signaling Potentiation Mechanism of Helicobacter pylori Oncogenic Effector CagA
Cell Host Microbe, 12, 2012
4DVZ
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BU of 4dvz by Molmil
Crystal structure of the Helicobacter pylori CagA oncoprotein
分子名称: Cytotoxicity-associated immunodominant antigen
著者Hayashi, T, Senda, M, Morohashi, H, Higashi, H, Horio, M, Kashiba, Y, Nagase, L, Sasaya, D, Shimizu, T, Venugopalan, N, Kumeta, H, Noda, N, Inagaki, F, Senda, T, Hatakeyama, M.
登録日2012-02-23
公開日2012-07-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.19 Å)
主引用文献Tertiary structure-function analysis reveals the pathogenic signaling potentiation mechanism of Helicobacter pylori oncogenic effector CagA
Cell Host Microbe, 12, 2012
2E50
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BU of 2e50 by Molmil
Crystal structure of SET/TAF-1beta/INHAT
分子名称: Protein SET, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
著者Muto, S, Senda, M, Senda, T, Horikoshi, M.
登録日2006-12-18
公開日2007-02-20
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Relationship between the structure of SET/TAF-Ibeta/INHAT and its histone chaperone activity
Proc.Natl.Acad.Sci.Usa, 104, 2007
2GR2
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BU of 2gr2 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GR3
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BU of 2gr3 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, GLYCEROL, ...
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GR1
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BU of 2gr1 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (hydroquinone)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GQW
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BU of 2gqw by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, GLYCEROL, ...
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2GR0
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BU of 2gr0 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form, NAD+ complex)
分子名称: ADENOSINE-5'-DIPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
5XXP
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BU of 5xxp by Molmil
Crystal structure of CbnR_DBD-DNA complex
分子名称: DNA (25-MER), LysR-type regulatory protein
著者Senda, T, Senda, M.
登録日2017-07-04
公開日2018-01-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure of the DNA-binding domain of the LysR-type transcriptional regulator CbnR in complex with a DNA fragment of the recognition-binding site in the promoter region
FEBS J., 285, 2018
8JW3
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BU of 8jw3 by Molmil
The crystal structure of the viral terpene synthase from Orpheovirus IHUMI-LCC2
分子名称: SULFATE ION, Terpenoid synthase
著者Jung, Y, Mitsuhashi, T, Senda, M, Sato, S, Senda, T, Fujita, M.
登録日2023-06-28
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Function and Structure of a Terpene Synthase Encoded in a Giant Virus Genome.
J.Am.Chem.Soc., 145, 2023
5XNY
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BU of 5xny by Molmil
Crystal structure of CreD
分子名称: CreD
著者Katsuyama, Y, Sato, Y, Sugai, Y, Higashiyama, Y, Senda, M, Senda, T, Ohnishi, Y.
登録日2017-05-25
公開日2018-03-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Crystal structure of the nitrosuccinate lyase CreD in complex with fumarate provides insights into the catalytic mechanism for nitrous acid elimination
FEBS J., 285, 2018
5XNZ
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BU of 5xnz by Molmil
Crystal structure of CreD complex with fumarate
分子名称: CreD, FUMARIC ACID
著者Katsuyama, Y, Sato, Y, Sugai, Y, Higashiyama, Y, Senda, M, Senda, T, Ohnishi, Y.
登録日2017-05-25
公開日2018-03-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the nitrosuccinate lyase CreD in complex with fumarate provides insights into the catalytic mechanism for nitrous acid elimination
FEBS J., 285, 2018
6K4H
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BU of 6k4h by Molmil
Crystal structure of the PI5P4Kbeta-AMPPNP complex
分子名称: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Phosphatidylinositol 5-phosphate 4-kinase type-2 beta
著者Takeuchi, K, Senda, M, Senda, T.
登録日2019-05-23
公開日2020-05-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 2022
6K4G
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BU of 6k4g by Molmil
Crystal structure of the PI5P4Kbeta-GMPPNP complex
分子名称: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Phosphatidylinositol 5-phosphate 4-kinase type-2 beta
著者Takeuchi, K, Senda, M, Senda, T.
登録日2019-05-23
公開日2020-05-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 2022

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