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PDB: 165 件
3WE7
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Crystal Structure of Diacetylchitobiose Deacetylase from Pyrococcus horikoshii
分子名称: ACETIC ACID, GLYCEROL, HEXANE-1,6-DIOL, ...
著者Mine, S, Nakamura, T, Fukuda, Y, Inoue, T, Uegaki, K, Sato, T.
登録日2013-07-01
公開日2014-05-07
最終更新日2014-08-20
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase
Febs J., 281, 2014
3AEI
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BU of 3aei by Molmil
Crystal structure of the prefoldin beta2 subunit from Thermococcus strain KS-1
分子名称: CHLORIDE ION, Prefoldin beta subunit 2, SULFATE ION
著者Ohtaki, A, Sugano, Y, Sato, T, Noguchi, K, Miyatake, H, Yohda, M.
登録日2010-02-08
公開日2010-05-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Thermodynamic Characterization of the Interaction between Prefoldin and Group II Chaperonin
J.Mol.Biol., 399, 2010
6KRU
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BU of 6kru by Molmil
Crystal structure of mouse IgG2b Fc
分子名称: Ig gamma-2B chain C region, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
著者Taniguchi, Y, Satoh, T, Yagi, H, Kato, K.
登録日2019-08-22
公開日2020-01-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献On-Membrane Dynamic Interplay between Anti-GM1 IgG Antibodies and Complement Component C1q.
Int J Mol Sci, 21, 2019
6KRV
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Crystal structure of mouse IgG2b Fc complexed with B domain of Protein A
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-2B chain C region, ...
著者Taniguchi, Y, Satoh, T, Yagi, H, Kato, K.
登録日2019-08-22
公開日2020-01-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献On-Membrane Dynamic Interplay between Anti-GM1 IgG Antibodies and Complement Component C1q.
Int J Mol Sci, 21, 2019
7CAP
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BU of 7cap by Molmil
Cyclic Lys48-linked triubiquitin
分子名称: Ubiquitin, ZINC ION
著者Hiranyakorn, M, Yanaka, S, Satoh, T, Wilasri, T, Jityuti, B, Yagi-Utsumi, T, Kato, K.
登録日2020-06-09
公開日2020-08-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献NMR Characterization of Conformational Interconversions of Lys48-Linked Ubiquitin Chains.
Int J Mol Sci, 21, 2020
7BPF
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BU of 7bpf by Molmil
Structure of L-threoninol nucleic acid - RNA complex
分子名称: L-aTNA (3'-(*GP*CP*AP*GP*CP*AP*GP*C)-1'), RNA (5'-R(*GP*CP*UP*GP*CP*(5BU)P*GP*C)-3')
著者Kamiya, Y, Satoh, T, Kodama, A, Suzuki, T, Uchiyama, S, Kato, K, Asanuma, H.
登録日2020-03-22
公開日2020-11-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Intrastrand backbone-nucleobase interactions stabilize unwound right-handed helical structures of heteroduplexes of L-aTNA/RNA and SNA/RNA
Commun Chem, 2020
7BPG
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Structure of serinol nucleic acid - RNA complex
分子名称: CALCIUM ION, RNA (5'-R(*GP*CP*UP*GP*CP*(5BU)P*GP*C)-3'), SNA (S-(F7R)(F7X)(F7O)(F7R)(F7X)(F7O)(F7R)(F7U)-R)
著者Kamiya, Y, Satoh, T, Kodama, A, Suzuki, T, Uchiyama, S, Kato, K, Asanuma, H.
登録日2020-03-22
公開日2020-11-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Intrastrand backbone-nucleobase interactions stabilize unwound right-handed helical structures of heteroduplexes of L-aTNA/RNA and SNA/RNA
Commun Chem, 2020
5BW7
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BU of 5bw7 by Molmil
Crystal structure of nonfucosylated Fc Y296W mutant complexed with bis-glycosylated soluble form of Fc gamma receptor IIIa
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Isoda, Y, Yagi, H, Satoh, T, Shibata-Koyama, M, Masuda, K, Satoh, M, Kato, K, Iida, S.
登録日2015-06-06
公開日2015-10-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Importance of the Side Chain at Position 296 of Antibody Fc in Interactions with Fc gamma RIIIa and Other Fc gamma Receptors
Plos One, 10, 2015
6K3D
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BU of 6k3d by Molmil
Structure of multicopper oxidase mutant
分子名称: COPPER (II) ION, CU-O-CU LINKAGE, Multicopper oxidase
著者Sakuraba, H, Ohshida, T, Satomura, T, Yoneda, K, Ohshima, T.
登録日2019-05-17
公開日2020-05-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.919 Å)
主引用文献Activity enhancement of multicopper oxidase from a hyperthermophile via directed evolution, and its application as the element of a high performance biocathode.
J.Biotechnol., 325, 2021
2RUF
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BU of 2ruf by Molmil
Solution structure of the a' domain of thermophilic fungal protein disulfide (reduced form, 303K)
分子名称: Protein disulfide-isomerase
著者Inagaki, K, Satoh, T, Kato, K.
登録日2014-03-31
公開日2015-05-20
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Redox-coupled structural changes of the catalytic a' domain of protein disulfide isomerase.
Febs Lett., 589, 2015
2RUE
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BU of 2rue by Molmil
Solution structure of the a' domain of thermophilic fungal protein disulfide (oxidized form, 303K)
分子名称: Protein disulfide-isomerase
著者Inagaki, K, Satoh, T, Kato, K.
登録日2014-03-27
公開日2015-05-20
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Redox-coupled structural changes of the catalytic a' domain of protein disulfide isomerase.
Febs Lett., 589, 2015
5Y9N
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BU of 5y9n by Molmil
Crystal structure of Pyrococcus furiosus PbaA (monoclinic form), an archaeal homolog of proteasome-assembly chaperone
分子名称: CHLORIDE ION, PbaA
著者Yagi-Utsumi, M, Sikdar, A, Kozai, T, Inoue, R, Sugiyama, M, Uchihashi, T, Satoh, T, Kato, K.
登録日2017-08-26
公開日2018-01-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Conversion of functionally undefined homopentameric protein PbaA into a proteasome activator by mutational modification of its C-terminal segment conformation
Protein Eng. Des. Sel., 31, 2018
5XJE
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BU of 5xje by Molmil
Crystal structure of fucosylated IgG1 Fc complexed with bis-glycosylated soluble form of Fc gamma receptor IIIa
分子名称: CHLORIDE ION, Immunoglobulin gamma-1 heavy chain, Low affinity immunoglobulin gamma Fc region receptor III-A, ...
著者Sakae, Y, Satoh, T, Yagi, H, Yanaka, S, Yamaguchi, T, Isoda, Y, Iida, S, Okamoto, Y, Kato, K.
登録日2017-05-01
公開日2017-11-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Conformational effects of N-glycan core fucosylation of immunoglobulin G Fc region on its interaction with Fc gamma receptor IIIa.
Sci Rep, 7, 2017
5XJF
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BU of 5xjf by Molmil
Crystal structure of fucosylated IgG Fc Y296W mutant complexed with bis-glycosylated soluble form of Fc gamma receptor IIIa
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
著者Sakae, Y, Satoh, T, Yagi, H, Yanaka, S, Yamaguchi, T, Isoda, Y, Iida, S, Okamoto, Y, Kato, K.
登録日2017-05-01
公開日2017-11-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Conformational effects of N-glycan core fucosylation of immunoglobulin G Fc region on its interaction with Fc gamma receptor IIIa.
Sci Rep, 7, 2017
8IC9
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BU of 8ic9 by Molmil
Lys48-linked K48C-diubiquitin
分子名称: Polyubiquitin-B, Ubiquitin
著者Hiranyakorn, M, Yagi-Utsumi, M, Yanaka, S, Ohtsuka, N, Momiyama, N, Satoh, T, Kato, K.
登録日2023-02-11
公開日2023-04-26
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Mutational and Environmental Effects on the Dynamic Conformational Distributions of Lys48-Linked Ubiquitin Chains.
Int J Mol Sci, 24, 2023
5CRW
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BU of 5crw by Molmil
Crystal structure of the b'-a' domain of oxidized protein disulfide isomerase complexed with alpha-synuclein peptide (31-41)
分子名称: Peptide from Alpha-synuclein, Protein disulfide-isomerase
著者Yagi-Utsumi, M, Satoh, T, Kato, K.
登録日2015-07-23
公開日2015-09-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural basis of redox-dependent substrate binding of protein disulfide isomerase.
Sci Rep, 5, 2015
7DBT
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BU of 7dbt by Molmil
Crystal structure of catalytic domain of Anhydrobiosis-related Mn-dependent Peroxidase (AMNP) from Ramazzottius varieornatus (Mn2+-bound form)
分子名称: AMNP/g12777, MANGANESE (II) ION
著者Yoshida, Y, Satoh, T, Ota, C, Tanaka, S, Horikawa, D.D, Tomita, M, Kato, K, Arakawa, K.
登録日2020-10-21
公開日2021-10-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Time-series transcriptomic screening of factors contributing to the cross-tolerance to UV radiation and anhydrobiosis in tardigrades.
Bmc Genomics, 23, 2022
7DBU
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BU of 7dbu by Molmil
Crystal structure of catalytic domain of Anhydrobiosis-related Mn-dependent Peroxidase (AMNP) from Ramazzottius varieornatus (Zn2+-bound form)
分子名称: AMNP/g12777, ZINC ION
著者Yoshida, Y, Satoh, T, Ota, C, Tanaka, S, Horikawa, D.D, Tomita, M, Kato, K, Arakawa, K.
登録日2020-10-21
公開日2021-10-06
最終更新日2022-06-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Time-series transcriptomic screening of factors contributing to the cross-tolerance to UV radiation and anhydrobiosis in tardigrades.
Bmc Genomics, 23, 2022
5WTQ
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BU of 5wtq by Molmil
Crystal structure of human proteasome-assembling chaperone PAC4
分子名称: CHLORIDE ION, NICKEL (II) ION, Proteasome assembly chaperone 4
著者Kurimoto, E, Satoh, T, Ito, Y, Ishihara, E, Tanaka, K, Kato, K.
登録日2016-12-13
公開日2017-03-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of human proteasome assembly chaperone PAC4 involved in proteasome formation
Protein Sci., 26, 2017
2DGE
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BU of 2dge by Molmil
Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana
分子名称: Cytochrome c6, PROTOPORPHYRIN IX CONTAINING FE, ZINC ION
著者Chida, H, Yokoyama, T, Kawai, F, Nakazawa, A, Akazaki, H, Takayama, Y, Hirano, T, Suruga, K, Satoh, T, Yamada, S, Kawachi, R, Unzai, S, Nishio, T, Park, S.-Y, Oku, T.
登録日2006-03-11
公開日2006-07-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of oxidized cytochrome c(6A) from Arabidopsis thaliana
Febs Lett., 580, 2006
3VR0
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BU of 3vr0 by Molmil
Crystal structure of Pyrococcus furiosus PbaB, an archaeal proteasome activator
分子名称: GOLD ION, Putative uncharacterized protein
著者Kumoi, K, Satoh, T, Hiromoto, T, Mizushima, T, Kamiya, Y, Noda, M, Uchiyama, S, Murata, K, Yagi, H, Kato, K.
登録日2012-04-02
公開日2013-04-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献An archaeal homolog of proteasome assembly factor functions as a proteasome activator
Plos One, 8, 2013
3AUL
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BU of 3aul by Molmil
Crystal structure of wild-type Lys48-linked diubiquitin in an open conformation
分子名称: Polyubiquitin-C
著者Hirano, T, Olivier, S, Yagi, M, Takemoto, E, Hiromoto, T, Satoh, T, Mizushima, T, Kato, K.
登録日2011-02-09
公開日2011-09-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Conformational dynamics of wild-type Lys48-linked diubiquitin in solution
J.Biol.Chem., 286, 2011
3VQR
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BU of 3vqr by Molmil
Structure of a dye-linked L-proline dehydrogenase mutant from the aerobic hyperthermophilic archaeon, Aeropyrum pernix
分子名称: 1,2-ETHANEDIOL, ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Sakuraba, H, Ohshima, T, Satomura, T, Yoneda, K.
登録日2012-03-29
公開日2012-04-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Crystal Structure of Novel Dye-linked L-Proline Dehydrogenase from Hyperthermophilic Archaeon Aeropyrum pernix
J.Biol.Chem., 287, 2012
3WUZ
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BU of 3wuz by Molmil
Crystal structure of the Ig V-set domain of human paired immunoglobulin-like type 2 receptor alpha
分子名称: CITRIC ACID, ISOPROPYL ALCOHOL, Paired immunoglobulin-like type 2 receptor alpha
著者Kuroki, K, Wang, J, Ose, T, Yamaguchi, M, Tabata, S, Maita, N, Nakamura, S, Kajikawa, M, Kogure, A, Satoh, T, Arase, H, Maenaka, K.
登録日2014-05-10
公開日2014-06-11
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural basis for simultaneous recognition of an O-glycan and its attached peptide of mucin family by immune receptor PILR alpha
Proc.Natl.Acad.Sci.USA, 111, 2014
3WV0
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O-glycan attached to herpes simplex virus type 1 glycoprotein gB is recognized by the Ig V-set domain of human paired immunoglobulin-like type 2 receptor alpha
分子名称: Envelope glycoprotein B, N-acetyl-alpha-neuraminic acid-(2-6)-2-acetamido-2-deoxy-alpha-D-galactopyranose, Paired immunoglobulin-like type 2 receptor alpha, ...
著者Kuroki, K, Wang, J, Ose, T, Yamaguchi, M, Tabata, S, Maita, N, Nakamura, S, Kajikawa, M, Kogure, A, Satoh, T, Arase, H, Maenaka, K.
登録日2014-05-10
公開日2014-06-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for simultaneous recognition of an O-glycan and its attached peptide of mucin family by immune receptor PILR alpha
Proc.Natl.Acad.Sci.USA, 111, 2014

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