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PDB: 38 results

8ARM
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BU of 8arm by Molmil
Crystal structure of LSSmScarlet2
Descriptor: LSSmScarlet2, SULFATE ION
Authors:Samygina, V.R, Subach, O.M, Vlaskina, A.V, Subach, F.V.
Deposit date:2022-08-17
Release date:2022-11-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:LSSmScarlet2 and LSSmScarlet3, Chemically Stable Genetically Encoded Red Fluorescent Proteins with a Large Stokes' Shift.
Int J Mol Sci, 23, 2022
4GIX
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BU of 4gix by Molmil
Crystal structure of human GLTP bound with 12:0 disulfatide
Descriptor: Glycolipid transfer protein, N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide
Authors:Samygina, V.R, Ochoa-Lizarralde, B, Malinina, L.
Deposit date:2012-08-09
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into lipid-dependent reversible dimerization of human GLTP.
Acta Crystallogr.,Sect.D, 69, 2013
4GHS
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BU of 4ghs by Molmil
Crystal structure of human GLTP bound with 12:0 disulfatide (orthorombic form; two subunits in asymmetric unit)
Descriptor: Glycolipid transfer protein, N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide
Authors:Samygina, V.R, Popov, A.N, Goni-de-Cerio, F, Cabo-Bilbao, A, Malinina, L.
Deposit date:2012-08-08
Release date:2013-06-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into lipid-dependent reversible dimerization of human GLTP.
Acta Crystallogr.,Sect.D, 69, 2013
4ENZ
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BU of 4enz by Molmil
Structure of human ceruloplasmin at 2.6 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, COPPER (II) ION, ...
Authors:Samygina, V.R, Sokolov, A.V, Bourenkov, G, Vasilyev, V.B, Bartunik, H.
Deposit date:2012-04-13
Release date:2013-04-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Ceruloplasmin: macromolecular assemblies with iron-containing acute phase proteins.
Plos One, 8, 2013
4EJX
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BU of 4ejx by Molmil
Structure of ceruloplasmin-myeloperoxidase complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, Ceruloplasmin, ...
Authors:Samygina, V.R, Sokolov, A.V, Bourenkov, G, Vasilyev, V.B, Bartunik, H.
Deposit date:2012-04-07
Release date:2013-04-10
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (4.69 Å)
Cite:Ceruloplasmin: macromolecular assemblies with iron-containing acute phase proteins.
Plos One, 8, 2013
6FVE
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BU of 6fve by Molmil
Macrophage Migration Inhibitory Factor (MIF) with Covalently Bound FITC
Descriptor: 2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)-5-[(E)-(sulfanylmethylidene)amino]benzoic acid, Macrophage migration inhibitory factor, SULFATE ION
Authors:Samygina, V.R, Bourenkov, G, Sokolov, A.V.
Deposit date:2018-03-02
Release date:2018-06-06
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Structural Study of the Complex Formed by Ceruloplasmin and Macrophage Migration Inhibitory Factor.
Biochemistry Mosc., 83, 2018
6FVH
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BU of 6fvh by Molmil
Macrophage Migration Inhibitory Factor (MIF) with Covalently Bound PITC
Descriptor: Macrophage migration inhibitory factor, N-phenylthioformamide, SULFATE ION
Authors:Samygina, V.R, Bourenkov, G, Sokolov, A.V.
Deposit date:2018-03-02
Release date:2018-06-06
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Study of the Complex Formed by Ceruloplasmin and Macrophage Migration Inhibitory Factor.
Biochemistry Mosc., 83, 2018
8QQH
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BU of 8qqh by Molmil
Structure of beta-galactosidase from Desulfurococcus amyloliticus
Descriptor: Beta-galactosidase
Authors:Samygina, V.R, Kil, Y, Sergeev, R.S, Rychkov, G.N.
Deposit date:2023-10-04
Release date:2024-08-14
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The archaeal highly thermostable GH35 family beta-galactosidase Da beta Gal has a unique seven domain protein fold.
Febs J., 291, 2024
5N4L
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BU of 5n4l by Molmil
Rat ceruloplasmin trigonal form
Descriptor: CALCIUM ION, COPPER (II) ION, Ceruloplasmin, ...
Authors:Samygina, V.R, Sokolov, A.V, Bourenkov, G, Vasilyev, V.B.
Deposit date:2017-02-11
Release date:2017-12-13
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Rat ceruloplasmin: a new labile copper binding site and zinc/copper mosaic.
Metallomics, 9, 2017
5N0K
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BU of 5n0k by Molmil
Rat ceruloplasmin orthorhombic form
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, COPPER (II) ION, ...
Authors:Samygina, V.R, Sokolov, A.V, Bourenkov, G, Vasilyev, V.B.
Deposit date:2017-02-03
Release date:2017-12-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Rat ceruloplasmin: a new labile copper binding site and zinc/copper mosaic.
Metallomics, 9, 2017
1I40
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BU of 1i40 by Molmil
STRUCTURE OF INORGANIC PYROPHOSPHATASE
Descriptor: CALCIUM ION, CHLORIDE ION, INORGANIC PYROPHOSPHATASE, ...
Authors:Samygina, V.R, Popov, A.N, Lamzin, V.S, Avaeva, S.M.
Deposit date:2001-02-19
Release date:2001-12-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:The structures of Escherichia coli inorganic pyrophosphatase complexed with Ca(2+) or CaPP(i) at atomic resolution and their mechanistic implications.
J.Mol.Biol., 314, 2001
1I6T
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BU of 1i6t by Molmil
STRUCTURE OF INORGANIC PYROPHOSPHATASE
Descriptor: CALCIUM ION, CHLORIDE ION, INORGANIC PYROPHOSPHATASE, ...
Authors:Samygina, V.R, Popov, A.N, Lamzin, V.S, Avaeva, S.M.
Deposit date:2001-03-05
Release date:2001-12-05
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The structures of Escherichia coli inorganic pyrophosphatase complexed with Ca(2+) or CaPP(i) at atomic resolution and their mechanistic implications.
J.Mol.Biol., 314, 2001
7QFC
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BU of 7qfc by Molmil
Crystal structure of cytotoxin 13 from Naja naja, orthorhombic form
Descriptor: Cytotoxin 13
Authors:Samygina, V.R, Dubova, K.M, Bourenkov, G, Utkin, Y.N, Dubovskii, P.V.
Deposit date:2021-12-05
Release date:2022-04-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Variability in the Spatial Structure of the Central Loop in Cobra Cytotoxins Revealed by X-ray Analysis and Molecular Modeling.
Toxins, 14, 2022
7QHI
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BU of 7qhi by Molmil
Crystal structure of cytotoxin 13 from Naja naja, hexagonal form
Descriptor: Cytotoxin 13
Authors:Samygina, V.R, Dubova, K.M, Bourenkov, G, Utkin, Y.N, Dubovskii, P.V.
Deposit date:2021-12-12
Release date:2022-04-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Variability in the Spatial Structure of the Central Loop in Cobra Cytotoxins Revealed by X-ray Analysis and Molecular Modeling.
Toxins, 14, 2022
8P5F
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BU of 8p5f by Molmil
Human wild-type GAPDH,orthorhombic form
Descriptor: ACETATE ION, Glyceraldehyde-3-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Samygina, V.R, Muronetz, V.I, Schmalhausen, E.V.
Deposit date:2023-05-24
Release date:2023-07-05
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:S-nitrosylation and S-glutathionylation of GAPDH: Similarities, differences, and relationships.
Biochim Biophys Acta Gen Subj, 1867, 2023
8QBJ
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BU of 8qbj by Molmil
Structure of mBaoJin at pH 4.6
Descriptor: CHLORIDE ION, mBaoJin
Authors:Samygina, V.R, Vlaskina, A.V, Gabdulkhakov, A, Subach, O.M, Subach, F.V.
Deposit date:2023-08-24
Release date:2023-12-27
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Bright and stable monomeric green fluorescent protein derived from StayGold.
Nat.Methods, 21, 2024
8QDD
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BU of 8qdd by Molmil
Structure of mBaoJin at pH 8.5
Descriptor: CHLORIDE ION, SULFATE ION, mBaoJin
Authors:Samygina, V.R, Vlaskina, A.V, Gabdulkhakov, A, Subach, O.M, Subach, F.V.
Deposit date:2023-08-28
Release date:2023-12-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Bright and stable monomeric green fluorescent protein derived from StayGold.
Nat.Methods, 21, 2024
8Q79
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BU of 8q79 by Molmil
Structure of mBaoJin at pH 6.5
Descriptor: CHLORIDE ION, mBaoJin
Authors:Samygina, V.R, Subach, O.M, Vlaskina, A.V, Nikolaeva, A.Y, Borshchevsky, V, Qin, W, Subach, F.V.
Deposit date:2023-08-15
Release date:2023-12-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Bright and stable monomeric green fluorescent protein derived from StayGold.
Nat.Methods, 21, 2024
2AU7
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BU of 2au7 by Molmil
The R43Q active site variant of E.coli inorganic pyrophosphatase
Descriptor: CHLORIDE ION, Inorganic pyrophosphatase, MANGANESE (II) ION, ...
Authors:Samygina, V.R, Avaeva, S.M, Bartunik, H.D.
Deposit date:2005-08-27
Release date:2006-08-29
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Reversible inhibition of Escherichia coli inorganic pyrophosphatase by fluoride: trapped catalytic intermediates in cryo-crystallographic studies
J.Mol.Biol., 366, 2007
2AUU
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BU of 2auu by Molmil
Inorganic pyrophosphatase complexed with magnesium pyrophosphate and fluoride
Descriptor: CHLORIDE ION, FLUORIDE ION, MAGNESIUM ION, ...
Authors:Samygina, V.R, Popov, A.N, Avaeva, S.M, Bartunik, H.D.
Deposit date:2005-08-29
Release date:2006-08-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Reversible inhibition of Escherichia coli inorganic pyrophosphatase by fluoride: trapped catalytic intermediates in cryo-crystallographic studies
J.Mol.Biol., 366, 2007
2AU9
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BU of 2au9 by Molmil
Inorganic pyrophosphatase complexed with substrate
Descriptor: CHLORIDE ION, FLUORIDE ION, Inorganic pyrophosphatase, ...
Authors:Samygina, V.R, Popov, A.N, Avaeva, S.M, Bartunik, H.D.
Deposit date:2005-08-27
Release date:2006-08-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Reversible inhibition of Escherichia coli inorganic pyrophosphatase by fluoride: trapped catalytic intermediates in cryo-crystallographic studies
J.Mol.Biol., 366, 2007
2AU6
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BU of 2au6 by Molmil
Crystal structure of catalytic intermediate of inorganic pyrophosphatase
Descriptor: CHLORIDE ION, FLUORIDE ION, Inorganic pyrophosphatase, ...
Authors:Samygina, V.R, Popov, A.N, Avaeva, S.M, Bartunik, H.D.
Deposit date:2005-08-27
Release date:2006-08-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Reversible inhibition of Escherichia coli inorganic pyrophosphatase by fluoride: trapped catalytic intermediates in cryo-crystallographic studies
J.Mol.Biol., 366, 2007
2AU8
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BU of 2au8 by Molmil
Catalytic intermediate structure of inorganic pyrophosphatase
Descriptor: CHLORIDE ION, Inorganic pyrophosphatase, MANGANESE (II) ION, ...
Authors:Samygina, V.R, Popov, A.N, Avaeva, S.M, Bartunik, H.D.
Deposit date:2005-08-27
Release date:2006-08-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Reversible inhibition of Escherichia coli inorganic pyrophosphatase by fluoride: trapped catalytic intermediates in cryo-crystallographic studies
J.Mol.Biol., 366, 2007
4GHP
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BU of 4ghp by Molmil
Crystal Structure of D48V||A47D mutant of Human GLTP bound with 12:0 monosulfatide
Descriptor: Glycolipid transfer protein, N-{(2S,3R,4E)-3-hydroxy-1-[(3-O-sulfo-beta-D-galactopyranosyl)oxy]octadec-4-en-2-yl}dodecanamide
Authors:Samygina, V.R, Ochoa-Lizarralde, B, Popov, A.N, Malinina, L.
Deposit date:2012-08-08
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into lipid-dependent reversible dimerization of human GLTP.
Acta Crystallogr.,Sect.D, 69, 2013
4GH0
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BU of 4gh0 by Molmil
Crystal structure of D48V mutant of human GLTP bound with 12:0 monosulfatide
Descriptor: Glycolipid transfer protein, N-{(2S,3R,4E)-3-hydroxy-1-[(3-O-sulfo-beta-D-galactopyranosyl)oxy]octadec-4-en-2-yl}dodecanamide, PENTADECANE
Authors:Samygina, V.R, Cabo-Bilbao, A, Ochoa-Lizarralde, B, Popov, A.N, Malinina, L.
Deposit date:2012-08-07
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural insights into lipid-dependent reversible dimerization of human GLTP.
Acta Crystallogr.,Sect.D, 69, 2013

 

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